Viewing data for Salamandrella keyserlingii


Scientific name Salamandrella keyserlingii
Common name Siberian salamander
Maximum lifespan 8.00 years (Salamandrella keyserlingii@AnAge)

Total mtDNA (size: 16338 bases) GC AT G C A T
Base content (bases) 5685 10650 3381 2304 5226 5424
Base content per 1 kb (bases) 348 652 207 141 320 332
Base content (%) 34.8% 65.2%
Total protein-coding genes (size: 11365 bases) GC AT G C A T
Base content (bases) 3954 7408 2442 1512 3782 3626
Base content per 1 kb (bases) 348 652 215 133 333 319
Base content (%) 34.8% 65.2%
D-loop (size: 736 bases) GC AT G C A T
Base content (bases) 244 492 136 108 266 226
Base content per 1 kb (bases) 332 668 185 147 361 307
Base content (%) 33.2% 66.8%
Total tRNA-coding genes (size: 1529 bases) GC AT G C A T
Base content (bases) 550 979 309 241 454 525
Base content per 1 kb (bases) 360 640 202 158 297 343
Base content (%) 36.0% 64.0%
Total rRNA-coding genes (size: 2537 bases) GC AT G C A T
Base content (bases) 865 1672 450 415 674 998
Base content per 1 kb (bases) 341 659 177 164 266 393
Base content (%) 34.1% 65.9%
12S rRNA gene (size: 932 bases) GC AT G C A T
Base content (bases) 349 583 187 162 240 343
Base content per 1 kb (bases) 374 626 201 174 258 368
Base content (%) 37.4% 62.6%
16S rRNA gene (size: 1605 bases) GC AT G C A T
Base content (bases) 516 1089 263 253 434 655
Base content per 1 kb (bases) 321 679 164 158 270 408
Base content (%) 32.1% 67.9%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 217 467 142 75 247 220
Base content per 1 kb (bases) 317 683 208 110 361 322
Base content (%) 31.7% 68.3%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 43 125 27 16 60 65
Base content per 1 kb (bases) 256 744 161 95 357 387
Base content (%) 25.6% 74.4%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 588 963 325 263 542 421
Base content per 1 kb (bases) 379 621 210 170 349 271
Base content (%) 37.9% 62.1%
COX2 (size: 688 bases) GC AT G C A T
Base content (bases) 233 455 138 95 222 233
Base content per 1 kb (bases) 339 661 201 138 323 339
Base content (%) 33.9% 66.1%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 291 494 164 127 267 227
Base content per 1 kb (bases) 371 629 209 162 340 289
Base content (%) 37.1% 62.9%
CYTB (size: 1142 bases) GC AT G C A T
Base content (bases) 422 720 265 157 373 347
Base content per 1 kb (bases) 370 630 232 137 327 304
Base content (%) 37.0% 63.0%
ND1 (size: 972 bases) GC AT G C A T
Base content (bases) 333 639 203 130 342 297
Base content per 1 kb (bases) 343 657 209 134 352 306
Base content (%) 34.3% 65.7%
ND2 (size: 1044 bases) GC AT G C A T
Base content (bases) 339 703 231 108 348 355
Base content per 1 kb (bases) 325 673 221 103 333 340
Base content (%) 32.5% 67.3%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 116 233 70 46 124 109
Base content per 1 kb (bases) 332 668 201 132 355 312
Base content (%) 33.2% 66.8%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 487 890 311 176 441 449
Base content per 1 kb (bases) 353 646 226 128 320 326
Base content (%) 35.3% 64.6%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 100 197 59 41 112 85
Base content per 1 kb (bases) 337 663 199 138 377 286
Base content (%) 33.7% 66.3%
ND5 (size: 1821 bases) GC AT G C A T
Base content (bases) 602 1219 370 232 612 607
Base content per 1 kb (bases) 331 669 203 127 336 333
Base content (%) 33.1% 66.9%
ND6 (size: 519 bases) GC AT G C A T
Base content (bases) 193 326 143 50 102 224
Base content per 1 kb (bases) 372 628 276 96 197 432
Base content (%) 37.2% 62.8%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.96%)
Alanine (Ala, A)
n = 14 (6.17%)
Serine (Ser, S)
n = 10 (4.41%)
Threonine (Thr, T)
n = 23 (10.13%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 12 (5.29%)
Leucine (Leu, L)
n = 54 (23.79%)
Isoleucine (Ile, I)
n = 21 (9.25%)
Methionine (Met, M)
n = 12 (5.29%)
Proline (Pro, P)
n = 16 (7.05%)
Phenylalanine (Phe, F)
n = 13 (5.73%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 6 (2.64%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 9 (3.96%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 4 (1.76%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 4 11 9 2 10 2 28 9 0 4 2 6 0 11 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 7 1 6 0 2 2 3 2 7 1 6 2 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 11 1 1 0 4 0 1 4 3 0 0 3 6 3 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 4 0 0 1 4 0 1 0 3 0 0 0 1 0 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
40 55 74 59
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
24 58 34 112
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 29 112 76
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPGPWFAIFISSWLVFLLILTLKISNLNNLNEPTSQNIKKNKPESWNWPWI*
Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.82%)
Alanine (Ala, A)
n = 1 (1.82%)
Serine (Ser, S)
n = 5 (9.09%)
Threonine (Thr, T)
n = 2 (3.64%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.82%)
Leucine (Leu, L)
n = 8 (14.55%)
Isoleucine (Ile, I)
n = 6 (10.91%)
Methionine (Met, M)
n = 1 (1.82%)
Proline (Pro, P)
n = 6 (10.91%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 2 (3.64%)
Asparagine (Asn, N)
n = 8 (14.55%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 4 (7.27%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 0 0 2 0 0 0 6 2 0 0 0 1 0 3 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 1 0 0 0 0 0 0 1 2 1 2 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 1 0 3 0 1 0 0 0 0 0 5 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 1 0 0 4 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
5 10 22 19
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
7 13 17 19
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 4 26 22
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.91%)
Alanine (Ala, A)
n = 40 (7.75%)
Serine (Ser, S)
n = 37 (7.17%)
Threonine (Thr, T)
n = 37 (7.17%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 39 (7.56%)
Leucine (Leu, L)
n = 61 (11.82%)
Isoleucine (Ile, I)
n = 39 (7.56%)
Methionine (Met, M)
n = 29 (5.62%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 40 (7.75%)
Tyrosine (Tyr, Y)
n = 19 (3.68%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 9 (1.74%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
29 10 23 14 4 9 2 30 6 1 17 4 14 4 26 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 0 13 12 12 3 7 8 21 10 10 7 9 2 16
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 12 2 4 7 22 0 2 2 15 4 2 2 12 3 11
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 9 1 11 4 7 1 3 1 5 0 0 0 1 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
150 92 132 143
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 138 94 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
36 95 195 191
COX2 (size: 688 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.51%)
Alanine (Ala, A)
n = 16 (7.02%)
Serine (Ser, S)
n = 17 (7.46%)
Threonine (Thr, T)
n = 14 (6.14%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 13 (5.7%)
Leucine (Leu, L)
n = 24 (10.53%)
Isoleucine (Ile, I)
n = 22 (9.65%)
Methionine (Met, M)
n = 17 (7.46%)
Proline (Pro, P)
n = 13 (5.7%)
Phenylalanine (Phe, F)
n = 9 (3.95%)
Tyrosine (Tyr, Y)
n = 9 (3.95%)
Tryptophan (Trp, W)
n = 5 (2.19%)
Aspartic acid (Asp, D)
n = 11 (4.82%)
Glutamic acid (Glu, E)
n = 13 (5.7%)
Asparagine (Asn, N)
n = 10 (4.39%)
Glutamine (Gln, Q)
n = 9 (3.95%)
Histidine (His, H)
n = 8 (3.51%)
Lysine (Lys, K)
n = 3 (1.32%)
Arginine (Arg, R)
n = 6 (2.63%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 4 14 4 1 2 1 14 8 1 2 3 7 1 8 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 0 7 1 7 1 3 2 3 0 2 3 8 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 7 0 1 5 8 0 1 2 8 1 0 2 6 4 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 12 1 8 3 3 0 1 2 3 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
61 44 69 55
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
24 57 63 85
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 37 101 81
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 20 (7.69%)
Serine (Ser, S)
n = 15 (5.77%)
Threonine (Thr, T)
n = 18 (6.92%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 28 (10.77%)
Isoleucine (Ile, I)
n = 19 (7.31%)
Methionine (Met, M)
n = 14 (5.38%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 25 (9.62%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 11 (4.23%)
Aspartic acid (Asp, D)
n = 6 (2.31%)
Glutamic acid (Glu, E)
n = 9 (3.46%)
Asparagine (Asn, N)
n = 3 (1.15%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 15 (5.77%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 6 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 3 12 7 2 6 0 11 7 1 7 2 6 1 20 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 5 7 8 0 2 4 12 3 4 1 7 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 11 1 2 1 9 0 1 2 11 0 0 2 3 0 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 7 2 4 2 2 0 1 1 4 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 56 59 74
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 62 54 102
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 46 113 90
CYTB (size: 1142 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (7.39%)
Alanine (Ala, A)
n = 25 (6.6%)
Serine (Ser, S)
n = 27 (7.12%)
Threonine (Thr, T)
n = 24 (6.33%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 21 (5.54%)
Leucine (Leu, L)
n = 55 (14.51%)
Isoleucine (Ile, I)
n = 30 (7.92%)
Methionine (Met, M)
n = 17 (4.49%)
Proline (Pro, P)
n = 23 (6.07%)
Phenylalanine (Phe, F)
n = 30 (7.92%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 17 (4.49%)
Glutamine (Gln, Q)
n = 7 (1.85%)
Histidine (His, H)
n = 11 (2.9%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 10 15 8 10 17 0 19 7 0 4 6 10 1 21 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 3 5 7 12 1 7 3 14 4 6 6 11 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 14 0 6 1 18 0 0 2 10 4 1 1 10 7 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 6 0 8 3 8 2 1 0 7 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
91 84 100 105
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 97 76 153
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 84 170 114
ND1 (size: 972 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (5.26%)
Alanine (Ala, A)
n = 22 (6.81%)
Serine (Ser, S)
n = 27 (8.36%)
Threonine (Thr, T)
n = 19 (5.88%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 16 (4.95%)
Leucine (Leu, L)
n = 53 (16.41%)
Isoleucine (Ile, I)
n = 33 (10.22%)
Methionine (Met, M)
n = 17 (5.26%)
Proline (Pro, P)
n = 22 (6.81%)
Phenylalanine (Phe, F)
n = 21 (6.5%)
Tyrosine (Tyr, Y)
n = 12 (3.72%)
Tryptophan (Trp, W)
n = 7 (2.17%)
Aspartic acid (Asp, D)
n = 3 (0.93%)
Glutamic acid (Glu, E)
n = 11 (3.41%)
Asparagine (Asn, N)
n = 17 (5.26%)
Glutamine (Gln, Q)
n = 7 (2.17%)
Histidine (His, H)
n = 3 (0.93%)
Lysine (Lys, K)
n = 7 (2.17%)
Arginine (Arg, R)
n = 8 (2.48%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
25 8 12 7 2 13 2 26 5 2 6 2 7 1 18 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 0 4 8 10 0 4 4 5 4 7 4 9 2 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 7 2 4 3 17 0 3 0 9 3 2 3 11 6 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 10 1 2 1 7 0 0 1 7 0 0 0 0 1 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
69 64 96 95
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
36 87 61 140
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 52 140 107
ND2 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.32%)
Alanine (Ala, A)
n = 23 (6.63%)
Serine (Ser, S)
n = 33 (9.51%)
Threonine (Thr, T)
n = 31 (8.93%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 5 (1.44%)
Leucine (Leu, L)
n = 66 (19.02%)
Isoleucine (Ile, I)
n = 31 (8.93%)
Methionine (Met, M)
n = 33 (9.51%)
Proline (Pro, P)
n = 19 (5.48%)
Phenylalanine (Phe, F)
n = 17 (4.9%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 14 (4.03%)
Glutamine (Gln, Q)
n = 9 (2.59%)
Histidine (His, H)
n = 9 (2.59%)
Lysine (Lys, K)
n = 11 (3.17%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
25 6 27 11 4 16 4 29 8 1 2 0 2 1 14 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 2 5 8 9 1 2 1 9 3 4 2 13 0 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 16 0 7 6 13 0 2 5 3 4 1 2 8 6 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 4 0 1 0 9 2 0 0 4 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
48 76 127 95
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 99 56 152
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 55 170 100
ND3 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.32%)
Alanine (Ala, A)
n = 23 (6.63%)
Serine (Ser, S)
n = 33 (9.51%)
Threonine (Thr, T)
n = 31 (8.93%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 5 (1.44%)
Leucine (Leu, L)
n = 66 (19.02%)
Isoleucine (Ile, I)
n = 31 (8.93%)
Methionine (Met, M)
n = 33 (9.51%)
Proline (Pro, P)
n = 19 (5.48%)
Phenylalanine (Phe, F)
n = 17 (4.9%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 14 (4.03%)
Glutamine (Gln, Q)
n = 9 (2.59%)
Histidine (His, H)
n = 9 (2.59%)
Lysine (Lys, K)
n = 11 (3.17%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
25 6 27 11 4 16 4 29 8 1 2 0 2 1 14 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 2 5 8 9 1 2 1 9 3 4 2 13 0 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 16 0 7 6 13 0 2 5 3 4 1 2 8 6 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 4 0 1 0 9 2 0 0 4 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
48 76 127 95
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 99 56 152
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 55 170 100
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (4.59%)
Alanine (Ala, A)
n = 31 (6.77%)
Serine (Ser, S)
n = 40 (8.73%)
Threonine (Thr, T)
n = 35 (7.64%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 13 (2.84%)
Leucine (Leu, L)
n = 89 (19.43%)
Isoleucine (Ile, I)
n = 43 (9.39%)
Methionine (Met, M)
n = 35 (7.64%)
Proline (Pro, P)
n = 25 (5.46%)
Phenylalanine (Phe, F)
n = 19 (4.15%)
Tyrosine (Tyr, Y)
n = 11 (2.4%)
Tryptophan (Trp, W)
n = 15 (3.28%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 12 (2.62%)
Asparagine (Asn, N)
n = 18 (3.93%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 12 (2.62%)
Lysine (Lys, K)
n = 12 (2.62%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
26 17 28 13 3 20 4 44 9 1 4 2 7 0 12 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 2 2 3 7 19 2 3 4 8 6 10 2 11 2 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 20 0 9 5 16 1 5 3 7 4 3 5 6 12 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 10 2 1 2 11 1 1 2 5 3 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
80 98 151 129
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
59 122 78 199
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
37 90 220 111
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 6 (6.12%)
Alanine (Ala, A)
n = 8 (8.16%)
Serine (Ser, S)
n = 8 (8.16%)
Threonine (Thr, T)
n = 9 (9.18%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 21 (21.43%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 8 (8.16%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 9 (9.18%)
Tyrosine (Tyr, Y)
n = 2 (2.04%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 3 (3.06%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 1 (1.02%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 5 4 0 2 1 13 2 0 2 0 1 0 8 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 3 2 2 4 0 1 1 3 1 1 0 1 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 3 0 2 1 3 1 0 1 0 2 0 1 2 1 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 3 0 1 0 1 0 1 0 1 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
21 17 24 37
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
13 26 17 43
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 16 44 32
ND5 (size: 1821 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (4.62%)
Alanine (Ala, A)
n = 44 (7.26%)
Serine (Ser, S)
n = 52 (8.58%)
Threonine (Thr, T)
n = 45 (7.43%)
Cysteine (Cys, C)
n = 6 (0.99%)
Valine (Val, V)
n = 22 (3.63%)
Leucine (Leu, L)
n = 86 (14.19%)
Isoleucine (Ile, I)
n = 56 (9.24%)
Methionine (Met, M)
n = 48 (7.92%)
Proline (Pro, P)
n = 23 (3.8%)
Phenylalanine (Phe, F)
n = 50 (8.25%)
Tyrosine (Tyr, Y)
n = 11 (1.82%)
Tryptophan (Trp, W)
n = 13 (2.15%)
Aspartic acid (Asp, D)
n = 13 (2.15%)
Glutamic acid (Glu, E)
n = 12 (1.98%)
Asparagine (Asn, N)
n = 31 (5.12%)
Glutamine (Gln, Q)
n = 20 (3.3%)
Histidine (His, H)
n = 10 (1.65%)
Lysine (Lys, K)
n = 26 (4.29%)
Arginine (Arg, R)
n = 10 (1.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
45 11 37 11 6 22 4 38 17 3 7 1 11 3 33 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
11 3 3 6 9 28 1 5 7 12 4 8 3 10 2 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 17 3 11 7 21 1 5 7 10 1 2 5 17 14 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 10 2 8 5 23 3 2 1 7 0 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
119 106 218 164
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
69 152 124 262
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
44 112 265 186
ND6 (size: 519 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (12.21%)
Alanine (Ala, A)
n = 11 (6.4%)
Serine (Ser, S)
n = 15 (8.72%)
Threonine (Thr, T)
n = 4 (2.33%)
Cysteine (Cys, C)
n = 4 (2.33%)
Valine (Val, V)
n = 21 (12.21%)
Leucine (Leu, L)
n = 33 (19.19%)
Isoleucine (Ile, I)
n = 7 (4.07%)
Methionine (Met, M)
n = 9 (5.23%)
Proline (Pro, P)
n = 4 (2.33%)
Phenylalanine (Phe, F)
n = 12 (6.98%)
Tyrosine (Tyr, Y)
n = 11 (6.4%)
Tryptophan (Trp, W)
n = 5 (2.91%)
Aspartic acid (Asp, D)
n = 1 (0.58%)
Glutamic acid (Glu, E)
n = 6 (3.49%)
Asparagine (Asn, N)
n = 5 (2.91%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (1.74%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 0 4 2 0 1 1 19 0 0 11 0 4 6 12 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 4 0 2 2 5 2 4 2 3 12 2 0 2 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 2 0 5 1 3 2 3 1 10 1 2 10 3 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 4 1 0 0 0 2 0 0 1 1 0 0 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
60 11 30 72
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 30 23 82
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
45 9 49 70
Total protein-coding genes (size: 11398 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 226 (5.95%)
Alanine (Ala, A)
n = 262 (6.9%)
Serine (Ser, S)
n = 296 (7.8%)
Threonine (Thr, T)
n = 267 (7.03%)
Cysteine (Cys, C)
n = 29 (0.76%)
Valine (Val, V)
n = 183 (4.82%)
Leucine (Leu, L)
n = 604 (15.91%)
Isoleucine (Ile, I)
n = 322 (8.48%)
Methionine (Met, M)
n = 246 (6.48%)
Proline (Pro, P)
n = 201 (5.3%)
Phenylalanine (Phe, F)
n = 255 (6.72%)
Tyrosine (Tyr, Y)
n = 113 (2.98%)
Tryptophan (Trp, W)
n = 114 (3.0%)
Aspartic acid (Asp, D)
n = 69 (1.82%)
Glutamic acid (Glu, E)
n = 99 (2.61%)
Asparagine (Asn, N)
n = 153 (4.03%)
Glutamine (Gln, Q)
n = 92 (2.42%)
Histidine (His, H)
n = 94 (2.48%)
Lysine (Lys, K)
n = 89 (2.34%)
Arginine (Arg, R)
n = 73 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
248 74 192 98 35 124 23 288 81 11 66 22 77 18 191 64
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
54 15 14 60 65 126 11 41 39 96 50 63 32 94 12 65
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
68 125 9 55 37 144 5 25 29 89 24 14 36 91 62 49
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
45 83 16 45 24 80 9 13 8 48 4 1 0 6 1 100
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
839 740 1132 1083
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
497 971 716 1610
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
273 642 1665 1214 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​S​a​l​a​m​a​n​d​r​e​l​l​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ k​e​y​s​e​r​l​i​n​g​i​i​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.