Viewing data for Trachypithecus francoisi


Scientific name Trachypithecus francoisi
Common name Francois' langur
Maximum lifespan 26.30 years (Trachypithecus francoisi@AnAge)

Total mtDNA (size: 16554 bases) GC AT G C A T
Base content (bases) 6446 10108 4330 2116 4795 5313
Base content per 1 kb (bases) 389 611 262 128 290 321
Base content (%) 38.9% 61.1%
Total protein-coding genes (size: 11337 bases) GC AT G C A T
Base content (bases) 4382 6955 3101 1281 3421 3534
Base content per 1 kb (bases) 387 613 274 113 302 312
Base content (%) 38.7% 61.3%
D-loop (size: 1093 bases) GC AT G C A T
Base content (bases) 463 630 312 151 307 323
Base content per 1 kb (bases) 424 576 285 138 281 296
Base content (%) 42.4% 57.6%
Total tRNA-coding genes (size: 1500 bases) GC AT G C A T
Base content (bases) 549 951 326 223 425 526
Base content per 1 kb (bases) 366 634 217 149 283 351
Base content (%) 36.6% 63.4%
Total rRNA-coding genes (size: 2510 bases) GC AT G C A T
Base content (bases) 1009 1501 565 444 608 893
Base content per 1 kb (bases) 402 598 225 177 242 356
Base content (%) 40.2% 59.8%
12S rRNA gene (size: 948 bases) GC AT G C A T
Base content (bases) 391 557 220 171 228 329
Base content per 1 kb (bases) 412 588 232 180 241 347
Base content (%) 41.2% 58.8%
16S rRNA gene (size: 1562 bases) GC AT G C A T
Base content (bases) 618 944 345 273 380 564
Base content per 1 kb (bases) 396 604 221 175 243 361
Base content (%) 39.6% 60.4%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 256 425 185 71 215 210
Base content per 1 kb (bases) 376 624 272 104 316 308
Base content (%) 37.6% 62.4%
ATP8 (size: 207 bases) GC AT G C A T
Base content (bases) 58 149 49 9 64 85
Base content per 1 kb (bases) 280 720 237 43 309 411
Base content (%) 28.0% 72.0%
COX1 (size: 1545 bases) GC AT G C A T
Base content (bases) 628 917 382 246 493 424
Base content per 1 kb (bases) 406 594 247 159 319 274
Base content (%) 40.6% 59.4%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 265 419 174 91 202 217
Base content per 1 kb (bases) 387 613 254 133 295 317
Base content (%) 38.7% 61.3%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 311 473 207 104 252 221
Base content per 1 kb (bases) 397 603 264 133 321 282
Base content (%) 39.7% 60.3%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 465 676 335 130 340 336
Base content per 1 kb (bases) 408 592 294 114 298 294
Base content (%) 40.8% 59.2%
ND1 (size: 955 bases) GC AT G C A T
Base content (bases) 383 572 274 109 292 280
Base content per 1 kb (bases) 401 599 287 114 306 293
Base content (%) 40.1% 59.9%
ND2 (size: 1042 bases) GC AT G C A T
Base content (bases) 372 670 281 91 315 355
Base content per 1 kb (bases) 357 643 270 87 302 341
Base content (%) 35.7% 64.3%
ND3 (size: 346 bases) GC AT G C A T
Base content (bases) 139 207 100 39 99 108
Base content per 1 kb (bases) 402 598 289 113 286 312
Base content (%) 40.2% 59.8%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 537 841 396 141 408 433
Base content per 1 kb (bases) 390 610 287 102 296 314
Base content (%) 39.0% 61.0%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 104 193 73 31 105 88
Base content per 1 kb (bases) 350 650 246 104 354 296
Base content (%) 35.0% 65.0%
ND5 (size: 1806 bases) GC AT G C A T
Base content (bases) 686 1120 501 185 541 579
Base content per 1 kb (bases) 380 620 277 102 300 321
Base content (%) 38.0% 62.0%
ND6 (size: 525 bases) GC AT G C A T
Base content (bases) 195 330 158 37 111 219
Base content per 1 kb (bases) 371 629 301 70 211 417
Base content (%) 37.1% 62.9%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 6 (2.65%)
Alanine (Ala, A)
n = 17 (7.52%)
Serine (Ser, S)
n = 10 (4.42%)
Threonine (Thr, T)
n = 28 (12.39%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 12 (5.31%)
Leucine (Leu, L)
n = 48 (21.24%)
Isoleucine (Ile, I)
n = 23 (10.18%)
Methionine (Met, M)
n = 10 (4.42%)
Proline (Pro, P)
n = 13 (5.75%)
Phenylalanine (Phe, F)
n = 14 (6.19%)
Tyrosine (Tyr, Y)
n = 2 (0.88%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 12 (5.31%)
Glutamine (Gln, Q)
n = 8 (3.54%)
Histidine (His, H)
n = 7 (3.1%)
Lysine (Lys, K)
n = 5 (2.21%)
Arginine (Arg, R)
n = 4 (1.77%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 8 5 4 8 22 2 10 7 1 2 0 8 2 12 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 0 3 8 6 0 1 2 3 0 3 5 5 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 11 1 3 2 2 0 1 2 2 0 2 2 9 3 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 3 0 1 0 4 1 1 1 2 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
39 68 81 39
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
16 65 39 107
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 52 90 69
ATP8 (size: 207 bases)
Amino acid sequence: MPQLNTSTWFITIMTMLPALYLIMQLKLLNTNYYLNPSQKIPNMQTFNNPWQLKWTKIYLLHLQPQLS*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.47%)
Serine (Ser, S)
n = 3 (4.41%)
Threonine (Thr, T)
n = 7 (10.29%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 13 (19.12%)
Isoleucine (Ile, I)
n = 5 (7.35%)
Methionine (Met, M)
n = 5 (7.35%)
Proline (Pro, P)
n = 6 (8.82%)
Phenylalanine (Phe, F)
n = 2 (2.94%)
Tyrosine (Tyr, Y)
n = 4 (5.88%)
Tryptophan (Trp, W)
n = 3 (4.41%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 7 (10.29%)
Glutamine (Gln, Q)
n = 7 (10.29%)
Histidine (His, H)
n = 1 (1.47%)
Lysine (Lys, K)
n = 4 (5.88%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 0 2 1 2 5 0 5 6 1 0 0 0 0 2 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 0 0 1 0 0 0 0 0 4 1 1 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 4 1 1 1 1 0 0 0 2 2 0 0 5 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 0 0 0 4 0 0 0 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1 22 28 18
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
3 17 24 25
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 10 33 21
COX1 (size: 1545 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.14%)
Alanine (Ala, A)
n = 39 (7.59%)
Serine (Ser, S)
n = 33 (6.42%)
Threonine (Thr, T)
n = 34 (6.61%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 36 (7.0%)
Leucine (Leu, L)
n = 62 (12.06%)
Isoleucine (Ile, I)
n = 41 (7.98%)
Methionine (Met, M)
n = 30 (5.84%)
Proline (Pro, P)
n = 29 (5.64%)
Phenylalanine (Phe, F)
n = 41 (7.98%)
Tyrosine (Tyr, Y)
n = 20 (3.89%)
Tryptophan (Trp, W)
n = 16 (3.11%)
Aspartic acid (Asp, D)
n = 15 (2.92%)
Glutamic acid (Glu, E)
n = 8 (1.56%)
Asparagine (Asn, N)
n = 17 (3.31%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 19 (3.7%)
Lysine (Lys, K)
n = 11 (2.14%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
32 9 28 9 9 21 8 14 7 0 5 11 19 1 23 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 15 11 13 0 12 12 17 6 9 11 9 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 14 2 8 8 12 1 1 3 15 5 2 1 8 9 8
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 7 1 6 9 10 1 1 4 3 0 0 0 1 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
145 110 137 123
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 131 98 210
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 141 189 160
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 12 (5.29%)
Serine (Ser, S)
n = 13 (5.73%)
Threonine (Thr, T)
n = 19 (8.37%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 32 (14.1%)
Isoleucine (Ile, I)
n = 25 (11.01%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 16 (7.05%)
Phenylalanine (Phe, F)
n = 10 (4.41%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 9 (3.96%)
Glutamic acid (Glu, E)
n = 11 (4.85%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 6 (2.64%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 7 8 4 4 15 1 8 7 0 3 5 4 1 7 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 4 6 2 0 2 3 5 1 4 3 9 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 10 0 2 3 5 0 1 2 5 4 0 0 5 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 9 2 4 5 3 1 1 1 3 1 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
56 59 69 44
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 57 55 90
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 58 93 68
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 13 (5.0%)
Serine (Ser, S)
n = 18 (6.92%)
Threonine (Thr, T)
n = 24 (9.23%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 14 (5.38%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 17 (6.54%)
Methionine (Met, M)
n = 13 (5.0%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 21 (8.08%)
Tyrosine (Tyr, Y)
n = 14 (5.38%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 8 11 8 4 10 1 11 7 1 5 5 4 0 11 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 6 2 4 1 4 7 8 0 4 4 5 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 10 0 4 4 6 0 1 3 7 7 1 0 3 2 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 6 1 2 1 3 0 1 2 2 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
56 66 66 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 64 57 99
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 77 98 79
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (5.54%)
Alanine (Ala, A)
n = 23 (6.07%)
Serine (Ser, S)
n = 28 (7.39%)
Threonine (Thr, T)
n = 34 (8.97%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 12 (3.17%)
Leucine (Leu, L)
n = 64 (16.89%)
Isoleucine (Ile, I)
n = 37 (9.76%)
Methionine (Met, M)
n = 16 (4.22%)
Proline (Pro, P)
n = 25 (6.6%)
Phenylalanine (Phe, F)
n = 23 (6.07%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 9 (2.37%)
Glutamic acid (Glu, E)
n = 4 (1.06%)
Asparagine (Asn, N)
n = 21 (5.54%)
Glutamine (Gln, Q)
n = 9 (2.37%)
Histidine (His, H)
n = 10 (2.64%)
Lysine (Lys, K)
n = 8 (2.11%)
Arginine (Arg, R)
n = 7 (1.85%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 16 14 10 14 25 3 11 6 3 2 2 7 1 10 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 3 3 8 12 0 4 10 6 1 2 8 14 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 12 0 8 9 7 0 0 4 5 9 1 1 17 4 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 4 0 4 5 8 0 1 1 4 1 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
69 103 120 88
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
47 106 75 152
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 126 141 99
ND1 (size: 955 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (4.1%)
Alanine (Ala, A)
n = 27 (8.52%)
Serine (Ser, S)
n = 25 (7.89%)
Threonine (Thr, T)
n = 31 (9.78%)
Cysteine (Cys, C)
n = 2 (0.63%)
Valine (Val, V)
n = 9 (2.84%)
Leucine (Leu, L)
n = 60 (18.93%)
Isoleucine (Ile, I)
n = 25 (7.89%)
Methionine (Met, M)
n = 15 (4.73%)
Proline (Pro, P)
n = 20 (6.31%)
Phenylalanine (Phe, F)
n = 20 (6.31%)
Tyrosine (Tyr, Y)
n = 11 (3.47%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 2 (0.63%)
Glutamic acid (Glu, E)
n = 11 (3.47%)
Asparagine (Asn, N)
n = 14 (4.42%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 4 (1.26%)
Lysine (Lys, K)
n = 7 (2.21%)
Arginine (Arg, R)
n = 7 (2.21%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 8 12 15 9 21 1 13 5 1 2 3 4 0 10 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 1 4 12 11 0 0 5 7 1 6 9 3 2 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 14 1 4 6 13 0 0 2 7 4 0 1 8 6 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 8 3 1 1 7 0 1 1 4 1 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
62 83 94 79
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 101 55 129
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 90 131 83
ND2 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.47%)
Alanine (Ala, A)
n = 17 (4.91%)
Serine (Ser, S)
n = 28 (8.09%)
Threonine (Thr, T)
n = 45 (13.01%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (2.89%)
Leucine (Leu, L)
n = 56 (16.18%)
Isoleucine (Ile, I)
n = 32 (9.25%)
Methionine (Met, M)
n = 30 (8.67%)
Proline (Pro, P)
n = 19 (5.49%)
Phenylalanine (Phe, F)
n = 15 (4.34%)
Tyrosine (Tyr, Y)
n = 11 (3.18%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 6 (1.73%)
Asparagine (Asn, N)
n = 21 (6.07%)
Glutamine (Gln, Q)
n = 11 (3.18%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 12 (3.47%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 9 26 8 8 25 2 11 11 0 5 3 2 0 9 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 1 10 6 0 3 5 4 0 7 5 6 1 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 16 1 6 8 8 1 1 4 8 3 3 2 12 9 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 6 0 1 0 12 0 1 2 0 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
46 83 145 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 104 69 143
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 94 141 98
ND3 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.47%)
Alanine (Ala, A)
n = 17 (4.91%)
Serine (Ser, S)
n = 28 (8.09%)
Threonine (Thr, T)
n = 45 (13.01%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (2.89%)
Leucine (Leu, L)
n = 56 (16.18%)
Isoleucine (Ile, I)
n = 32 (9.25%)
Methionine (Met, M)
n = 30 (8.67%)
Proline (Pro, P)
n = 19 (5.49%)
Phenylalanine (Phe, F)
n = 15 (4.34%)
Tyrosine (Tyr, Y)
n = 11 (3.18%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 6 (1.73%)
Asparagine (Asn, N)
n = 21 (6.07%)
Glutamine (Gln, Q)
n = 11 (3.18%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 12 (3.47%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 9 26 8 8 25 2 11 11 0 5 3 2 0 9 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 1 10 6 0 3 5 4 0 7 5 6 1 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 16 1 6 8 8 1 1 4 8 3 3 2 12 9 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 6 0 1 0 12 0 1 2 0 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
46 83 145 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 104 69 143
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 94 141 98
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 27 (5.9%)
Serine (Ser, S)
n = 42 (9.17%)
Threonine (Thr, T)
n = 47 (10.26%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 13 (2.84%)
Leucine (Leu, L)
n = 89 (19.43%)
Isoleucine (Ile, I)
n = 40 (8.73%)
Methionine (Met, M)
n = 37 (8.08%)
Proline (Pro, P)
n = 22 (4.8%)
Phenylalanine (Phe, F)
n = 19 (4.15%)
Tyrosine (Tyr, Y)
n = 15 (3.28%)
Tryptophan (Trp, W)
n = 11 (2.4%)
Aspartic acid (Asp, D)
n = 2 (0.44%)
Glutamic acid (Glu, E)
n = 10 (2.18%)
Asparagine (Asn, N)
n = 24 (5.24%)
Glutamine (Gln, Q)
n = 7 (1.53%)
Histidine (His, H)
n = 13 (2.84%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 10 30 14 18 33 4 16 5 2 2 2 6 3 10 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 3 6 10 10 1 1 9 7 0 4 13 5 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
22 21 0 10 13 9 0 3 7 9 6 0 4 10 14 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 10 0 0 2 11 0 0 2 8 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
69 121 169 100
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
51 128 82 198
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 147 182 109
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 9 (9.18%)
Serine (Ser, S)
n = 8 (8.16%)
Threonine (Thr, T)
n = 2 (2.04%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 10 (10.2%)
Methionine (Met, M)
n = 11 (11.22%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 4 (4.08%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 6 (6.12%)
Glutamine (Gln, Q)
n = 1 (1.02%)
Histidine (His, H)
n = 3 (3.06%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 5 9 2 4 10 0 7 1 0 0 1 2 0 3 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 3 3 3 3 0 2 1 1 0 0 3 0 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 1 0 2 1 4 0 1 0 4 0 0 0 2 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 1 1 0 0 0 1 0 0 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
19 24 30 26
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
9 21 18 51
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 28 40 28
ND5 (size: 1806 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (4.33%)
Alanine (Ala, A)
n = 37 (6.16%)
Serine (Ser, S)
n = 44 (7.32%)
Threonine (Thr, T)
n = 63 (10.48%)
Cysteine (Cys, C)
n = 6 (1.0%)
Valine (Val, V)
n = 15 (2.5%)
Leucine (Leu, L)
n = 99 (16.47%)
Isoleucine (Ile, I)
n = 59 (9.82%)
Methionine (Met, M)
n = 38 (6.32%)
Proline (Pro, P)
n = 27 (4.49%)
Phenylalanine (Phe, F)
n = 39 (6.49%)
Tyrosine (Tyr, Y)
n = 17 (2.83%)
Tryptophan (Trp, W)
n = 12 (2.0%)
Aspartic acid (Asp, D)
n = 13 (2.16%)
Glutamic acid (Glu, E)
n = 9 (1.5%)
Asparagine (Asn, N)
n = 33 (5.49%)
Glutamine (Gln, Q)
n = 18 (3.0%)
Histidine (His, H)
n = 18 (3.0%)
Lysine (Lys, K)
n = 20 (3.33%)
Arginine (Arg, R)
n = 8 (1.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
35 24 33 13 19 44 4 18 14 4 6 1 7 1 23 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 2 4 9 15 13 0 7 8 10 1 3 12 12 0 14
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
28 20 1 6 13 14 0 5 6 9 8 1 1 15 18 9
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 6 3 6 7 19 1 2 2 4 0 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
100 151 224 127
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
63 160 129 250
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 190 226 164
ND6 (size: 525 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (14.94%)
Alanine (Ala, A)
n = 8 (4.6%)
Serine (Ser, S)
n = 11 (6.32%)
Threonine (Thr, T)
n = 4 (2.3%)
Cysteine (Cys, C)
n = 1 (0.57%)
Valine (Val, V)
n = 27 (15.52%)
Leucine (Leu, L)
n = 25 (14.37%)
Isoleucine (Ile, I)
n = 13 (7.47%)
Methionine (Met, M)
n = 10 (5.75%)
Proline (Pro, P)
n = 4 (2.3%)
Phenylalanine (Phe, F)
n = 7 (4.02%)
Tyrosine (Tyr, Y)
n = 11 (6.32%)
Tryptophan (Trp, W)
n = 5 (2.87%)
Aspartic acid (Asp, D)
n = 3 (1.72%)
Glutamic acid (Glu, E)
n = 10 (5.75%)
Asparagine (Asn, N)
n = 5 (2.87%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.57%)
Arginine (Arg, R)
n = 3 (1.72%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 0 4 1 0 0 1 16 0 0 14 1 4 8 7 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 0 3 0 2 3 11 3 7 5 3 0 1 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 1 4 0 2 0 4 1 10 1 4 7 5 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 3 7 3 0 0 1 2 0 1 0 1 0 0 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 9 39 53
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 22 30 82
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
43 6 42 84
Total protein-coding genes (size: 11391 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 205 (5.4%)
Alanine (Ala, A)
n = 238 (6.27%)
Serine (Ser, S)
n = 267 (7.04%)
Threonine (Thr, T)
n = 347 (9.15%)
Cysteine (Cys, C)
n = 23 (0.61%)
Valine (Val, V)
n = 167 (4.4%)
Leucine (Leu, L)
n = 632 (16.66%)
Isoleucine (Ile, I)
n = 337 (8.88%)
Methionine (Met, M)
n = 232 (6.11%)
Proline (Pro, P)
n = 205 (5.4%)
Phenylalanine (Phe, F)
n = 222 (5.85%)
Tyrosine (Tyr, Y)
n = 135 (3.56%)
Tryptophan (Trp, W)
n = 102 (2.69%)
Aspartic acid (Asp, D)
n = 63 (1.66%)
Glutamic acid (Glu, E)
n = 86 (2.27%)
Asparagine (Asn, N)
n = 178 (4.69%)
Glutamine (Gln, Q)
n = 91 (2.4%)
Histidine (His, H)
n = 105 (2.77%)
Lysine (Lys, K)
n = 90 (2.37%)
Arginine (Arg, R)
n = 63 (1.66%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
229 108 189 90 103 245 30 145 78 13 46 35 69 17 132 90
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
43 5 18 60 87 86 5 47 67 75 16 52 77 72 4 76
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
127 136 8 58 70 85 2 18 34 83 52 15 19 99 79 46
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
59 68 18 29 34 83 7 12 17 31 3 1 0 6 0 87
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
759 932 1237 867
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
446 1005 754 1590
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
200 1057 1456 1082 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​T​r​a​c​h​y​p​i​t​h​e​c​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ f​r​a​n​c​o​i​s​i​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.