Viewing data for Trachypithecus vetulus
| Scientific name | Trachypithecus vetulus |
| Common name | Purple-faced leaf monkey |
| Maximum lifespan | 26.10 years (Trachypithecus vetulus@AnAge) |
| Total mtDNA (size: 16554 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 6531 | 10023 | 4335 | 2196 | 4773 | 5250 |
| Base content per 1 kb (bases) | 395 | 605 | 262 | 133 | 288 | 317 |
| Base content (%) | 39.5% | 60.5% | ||||
| Total protein-coding genes (size: 11328 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 4402 | 6926 | 3072 | 1330 | 3431 | 3495 |
| Base content per 1 kb (bases) | 389 | 611 | 271 | 117 | 303 | 309 |
| Base content (%) | 38.9% | 61.1% | ||||
| D-loop (size: 1093 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 473 | 620 | 317 | 156 | 304 | 316 |
| Base content per 1 kb (bases) | 433 | 567 | 290 | 143 | 278 | 289 |
| Base content (%) | 43.3% | 56.7% | ||||
| Total tRNA-coding genes (size: 1503 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 571 | 932 | 333 | 238 | 414 | 518 |
| Base content per 1 kb (bases) | 380 | 620 | 222 | 158 | 275 | 345 |
| Base content (%) | 38.0% | 62.0% | ||||
| Total rRNA-coding genes (size: 2494 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1030 | 1464 | 577 | 453 | 594 | 870 |
| Base content per 1 kb (bases) | 413 | 587 | 231 | 182 | 238 | 349 |
| Base content (%) | 41.3% | 58.7% | ||||
| 12S rRNA gene (size: 947 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 400 | 547 | 223 | 177 | 226 | 321 |
| Base content per 1 kb (bases) | 422 | 578 | 235 | 187 | 239 | 339 |
| Base content (%) | 42.2% | 57.8% | ||||
| 16S rRNA gene (size: 1547 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 630 | 917 | 354 | 276 | 368 | 549 |
| Base content per 1 kb (bases) | 407 | 593 | 229 | 178 | 238 | 355 |
| Base content (%) | 40.7% | 59.3% | ||||
| ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 270 | 411 | 196 | 74 | 199 | 212 |
| Base content per 1 kb (bases) | 396 | 604 | 288 | 109 | 292 | 311 |
| Base content (%) | 39.6% | 60.4% | ||||
| ATP8 (size: 207 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 66 | 141 | 53 | 13 | 66 | 75 |
| Base content per 1 kb (bases) | 319 | 681 | 256 | 63 | 319 | 362 |
| Base content (%) | 31.9% | 68.1% | ||||
| COX1 (size: 1545 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 627 | 918 | 385 | 242 | 501 | 417 |
| Base content per 1 kb (bases) | 406 | 594 | 249 | 157 | 324 | 270 |
| Base content (%) | 40.6% | 59.4% | ||||
| COX2 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 277 | 407 | 177 | 100 | 197 | 210 |
| Base content per 1 kb (bases) | 405 | 595 | 259 | 146 | 288 | 307 |
| Base content (%) | 40.5% | 59.5% | ||||
| COX3 (size: 784 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 325 | 459 | 211 | 114 | 246 | 213 |
| Base content per 1 kb (bases) | 415 | 585 | 269 | 145 | 314 | 272 |
| Base content (%) | 41.5% | 58.5% | ||||
| CYTB (size: 1135 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 472 | 663 | 336 | 136 | 331 | 332 |
| Base content per 1 kb (bases) | 416 | 584 | 296 | 120 | 292 | 293 |
| Base content (%) | 41.6% | 58.4% | ||||
| ND1 (size: 955 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 378 | 577 | 266 | 112 | 296 | 281 |
| Base content per 1 kb (bases) | 396 | 604 | 279 | 117 | 310 | 294 |
| Base content (%) | 39.6% | 60.4% | ||||
| ND2 (size: 1042 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 367 | 675 | 282 | 85 | 311 | 364 |
| Base content per 1 kb (bases) | 352 | 648 | 271 | 82 | 298 | 349 |
| Base content (%) | 35.2% | 64.8% | ||||
| ND3 (size: 346 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 126 | 220 | 86 | 40 | 113 | 107 |
| Base content per 1 kb (bases) | 364 | 636 | 249 | 116 | 327 | 309 |
| Base content (%) | 36.4% | 63.6% | ||||
| ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 523 | 855 | 378 | 145 | 425 | 430 |
| Base content per 1 kb (bases) | 380 | 620 | 274 | 105 | 308 | 312 |
| Base content (%) | 38.0% | 62.0% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 107 | 190 | 76 | 31 | 99 | 91 |
| Base content per 1 kb (bases) | 360 | 640 | 256 | 104 | 333 | 306 |
| Base content (%) | 36.0% | 64.0% | ||||
| ND5 (size: 1806 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 691 | 1115 | 490 | 201 | 548 | 567 |
| Base content per 1 kb (bases) | 383 | 617 | 271 | 111 | 303 | 314 |
| Base content (%) | 38.3% | 61.7% | ||||
| ND6 (size: 522 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 192 | 330 | 150 | 42 | 116 | 214 |
| Base content per 1 kb (bases) | 368 | 632 | 287 | 80 | 222 | 410 |
| Base content (%) | 36.8% | 63.2% | ||||
| ATP6 (size: 681 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.54%) 
Alanine (Ala, A)
n = 22 (9.73%) 
Serine (Ser, S)
n = 12 (5.31%) 
Threonine (Thr, T)
n = 21 (9.29%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 11 (4.87%) 
Leucine (Leu, L)
n = 45 (19.91%) 
Isoleucine (Ile, I)
n = 22 (9.73%) 
Methionine (Met, M)
n = 13 (5.75%) 
Proline (Pro, P)
n = 15 (6.64%) 
Phenylalanine (Phe, F)
n = 12 (5.31%) 
Tyrosine (Tyr, Y)
n = 2 (0.88%) 
Tryptophan (Trp, W)
n = 2 (0.88%) 
Aspartic acid (Asp, D)
n = 2 (0.88%) 
Glutamic acid (Glu, E)
n = 3 (1.33%) 
Asparagine (Asn, N)
n = 13 (5.75%) 
Glutamine (Gln, Q)
n = 10 (4.42%) 
Histidine (His, H)
n = 5 (2.21%) 
Lysine (Lys, K)
n = 5 (2.21%) 
Arginine (Arg, R)
n = 3 (1.33%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 15 | 7 | 11 | 5 | 5 | 22 | 3 | 9 | 8 | 2 | 3 | 2 | 5 | 1 | 7 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 0 | 3 | 9 | 10 | 0 | 1 | 3 | 3 | 1 | 5 | 6 | 4 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 8 | 1 | 2 | 4 | 3 | 0 | 0 | 3 | 1 | 1 | 1 | 1 | 8 | 5 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 3 | 0 | 2 | 0 | 5 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 46 | 68 | 77 | 36 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 16 | 67 | 41 | 103 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 12 | 61 | 94 | 60 | ||||||||||||
| ATP8 (size: 207 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLNTSTWFITIITMLPALYLIMQLKLLKMTYYFAPSQKTFDVQPFNNPWQLKWTKIYLPPSQLHHS* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 2 (2.94%)
Serine (Ser, S)
n = 4 (5.88%)
Threonine (Thr, T)
n = 7 (10.29%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.47%)
Leucine (Leu, L)
n = 10 (14.71%)
Isoleucine (Ile, I)
n = 5 (7.35%)
Methionine (Met, M)
n = 4 (5.88%)
Proline (Pro, P)
n = 7 (10.29%)
Phenylalanine (Phe, F)
n = 4 (5.88%)
Tyrosine (Tyr, Y)
n = 4 (5.88%)
Tryptophan (Trp, W)
n = 3 (4.41%)
Aspartic acid (Asp, D)
n = 1 (1.47%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 3 (4.41%)
Glutamine (Gln, Q)
n = 6 (8.82%)
Histidine (His, H)
n = 2 (2.94%)
Lysine (Lys, K)
n = 5 (7.35%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 4 | 1 | 3 | 1 | 1 | 3 | 1 | 3 | 5 | 1 | 0 | 0 | 1 | 0 | 4 | 0 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 4 | 1 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 2 | 1 | 1 | 1 | 2 | 0 | 0 | 0 | 2 | 2 | 0 | 1 | 2 | 1 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 0 | 0 | 1 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 4 | 21 | 24 | 20 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 3 | 20 | 22 | 24 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 6 | 12 | 29 | 22 | ||||||||||||
| COX1 (size: 1545 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.14%)
Alanine (Ala, A)
n = 41 (7.98%)
Serine (Ser, S)
n = 33 (6.42%)
Threonine (Thr, T)
n = 32 (6.23%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 35 (6.81%)
Leucine (Leu, L)
n = 63 (12.26%)
Isoleucine (Ile, I)
n = 42 (8.17%)
Methionine (Met, M)
n = 30 (5.84%)
Proline (Pro, P)
n = 29 (5.64%)
Phenylalanine (Phe, F)
n = 41 (7.98%)
Tyrosine (Tyr, Y)
n = 20 (3.89%)
Tryptophan (Trp, W)
n = 16 (3.11%)
Aspartic acid (Asp, D)
n = 14 (2.72%)
Glutamic acid (Glu, E)
n = 8 (1.56%)
Asparagine (Asn, N)
n = 18 (3.5%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 18 (3.5%)
Lysine (Lys, K)
n = 11 (2.14%)
Arginine (Arg, R)
n = 8 (1.56%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 34 | 8 | 28 | 11 | 10 | 21 | 4 | 16 | 5 | 2 | 9 | 8 | 15 | 3 | 18 | 23 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 1 | 10 | 17 | 13 | 1 | 12 | 14 | 21 | 0 | 11 | 11 | 6 | 1 | 12 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 13 | 1 | 5 | 11 | 14 | 0 | 0 | 3 | 17 | 3 | 3 | 1 | 6 | 12 | 8 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 5 | 3 | 9 | 5 | 10 | 1 | 2 | 3 | 3 | 0 | 0 | 0 | 1 | 0 | 13 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 145 | 108 | 136 | 126 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 75 | 132 | 97 | 211 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 22 | 145 | 184 | 164 | ||||||||||||
| COX2 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 13 (5.73%)
Serine (Ser, S)
n = 12 (5.29%)
Threonine (Thr, T)
n = 20 (8.81%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 17 (7.49%)
Leucine (Leu, L)
n = 31 (13.66%)
Isoleucine (Ile, I)
n = 20 (8.81%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 16 (7.05%)
Phenylalanine (Phe, F)
n = 10 (4.41%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 9 (3.96%)
Glutamic acid (Glu, E)
n = 11 (4.85%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 6 (2.64%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 12 | 8 | 9 | 4 | 3 | 10 | 2 | 9 | 6 | 1 | 7 | 5 | 5 | 0 | 7 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 2 | 2 | 6 | 5 | 0 | 0 | 5 | 5 | 1 | 2 | 5 | 9 | 0 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 3 | 9 | 1 | 2 | 4 | 4 | 0 | 0 | 2 | 5 | 4 | 0 | 3 | 4 | 5 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 7 | 4 | 4 | 5 | 4 | 0 | 2 | 1 | 3 | 0 | 0 | 0 | 0 | 1 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 61 | 54 | 65 | 48 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 25 | 59 | 56 | 88 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 14 | 64 | 89 | 61 | ||||||||||||
| COX3 (size: 784 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 15 (5.77%)
Serine (Ser, S)
n = 18 (6.92%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 11 (4.23%)
Leucine (Leu, L)
n = 35 (13.46%)
Isoleucine (Ile, I)
n = 20 (7.69%)
Methionine (Met, M)
n = 11 (4.23%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 21 (8.08%)
Tyrosine (Tyr, Y)
n = 14 (5.38%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 4 (1.54%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 15 | 5 | 9 | 5 | 6 | 12 | 4 | 7 | 6 | 2 | 5 | 3 | 3 | 0 | 11 | 10 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 1 | 0 | 4 | 6 | 4 | 1 | 3 | 9 | 6 | 1 | 4 | 3 | 6 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 9 | 1 | 5 | 1 | 8 | 0 | 1 | 3 | 8 | 6 | 4 | 1 | 3 | 2 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 13 | 5 | 2 | 1 | 2 | 4 | 0 | 2 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 55 | 70 | 66 | 70 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 41 | 64 | 58 | 98 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 18 | 77 | 89 | 77 | ||||||||||||
| CYTB (size: 1135 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 22 (5.84%)
Alanine (Ala, A)
n = 22 (5.84%)
Serine (Ser, S)
n = 30 (7.96%)
Threonine (Thr, T)
n = 26 (6.9%)
Cysteine (Cys, C)
n = 3 (0.8%)
Valine (Val, V)
n = 12 (3.18%)
Leucine (Leu, L)
n = 65 (17.24%)
Isoleucine (Ile, I)
n = 36 (9.55%)
Methionine (Met, M)
n = 21 (5.57%)
Proline (Pro, P)
n = 24 (6.37%)
Phenylalanine (Phe, F)
n = 24 (6.37%)
Tyrosine (Tyr, Y)
n = 14 (3.71%)
Tryptophan (Trp, W)
n = 11 (2.92%)
Aspartic acid (Asp, D)
n = 9 (2.39%)
Glutamic acid (Glu, E)
n = 5 (1.33%)
Asparagine (Asn, N)
n = 18 (4.77%)
Glutamine (Gln, Q)
n = 9 (2.39%)
Histidine (His, H)
n = 11 (2.92%)
Lysine (Lys, K)
n = 9 (2.39%)
Arginine (Arg, R)
n = 7 (1.86%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 17 | 19 | 15 | 10 | 15 | 25 | 3 | 11 | 8 | 1 | 2 | 2 | 7 | 1 | 7 | 17 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 1 | 2 | 3 | 6 | 11 | 2 | 5 | 7 | 7 | 3 | 3 | 8 | 12 | 1 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 11 | 13 | 0 | 4 | 16 | 6 | 0 | 1 | 3 | 8 | 6 | 0 | 1 | 10 | 8 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 7 | 5 | 0 | 5 | 4 | 9 | 0 | 0 | 3 | 3 | 1 | 0 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 70 | 104 | 114 | 90 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 47 | 98 | 75 | 158 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 19 | 134 | 143 | 82 | ||||||||||||
| ND1 (size: 955 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 13 (4.1%)
Alanine (Ala, A)
n = 28 (8.83%)
Serine (Ser, S)
n = 21 (6.62%)
Threonine (Thr, T)
n = 31 (9.78%)
Cysteine (Cys, C)
n = 1 (0.32%)
Valine (Val, V)
n = 9 (2.84%)
Leucine (Leu, L)
n = 61 (19.24%)
Isoleucine (Ile, I)
n = 23 (7.26%)
Methionine (Met, M)
n = 16 (5.05%)
Proline (Pro, P)
n = 21 (6.62%)
Phenylalanine (Phe, F)
n = 21 (6.62%)
Tyrosine (Tyr, Y)
n = 14 (4.42%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.95%)
Glutamic acid (Glu, E)
n = 11 (3.47%)
Asparagine (Asn, N)
n = 14 (4.42%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 2 (0.63%)
Lysine (Lys, K)
n = 7 (2.21%)
Arginine (Arg, R)
n = 7 (2.21%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 20 | 3 | 13 | 15 | 9 | 28 | 1 | 7 | 6 | 0 | 4 | 2 | 2 | 1 | 11 | 10 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 1 | 5 | 12 | 9 | 2 | 2 | 5 | 4 | 2 | 6 | 9 | 6 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 11 | 19 | 0 | 7 | 0 | 11 | 1 | 1 | 1 | 10 | 4 | 2 | 1 | 6 | 8 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 10 | 1 | 3 | 0 | 5 | 2 | 2 | 1 | 4 | 0 | 0 | 0 | 0 | 0 | 7 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 64 | 89 | 93 | 72 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 32 | 99 | 57 | 130 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 16 | 78 | 131 | 93 | ||||||||||||
| ND2 (size: 1042 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.76%)
Alanine (Ala, A)
n = 22 (6.36%)
Serine (Ser, S)
n = 31 (8.96%)
Threonine (Thr, T)
n = 45 (13.01%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 5 (1.45%)
Leucine (Leu, L)
n = 58 (16.76%)
Isoleucine (Ile, I)
n = 28 (8.09%)
Methionine (Met, M)
n = 31 (8.96%)
Proline (Pro, P)
n = 18 (5.2%)
Phenylalanine (Phe, F)
n = 16 (4.62%)
Tyrosine (Tyr, Y)
n = 12 (3.47%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 22 (6.36%)
Glutamine (Gln, Q)
n = 11 (3.18%)
Histidine (His, H)
n = 3 (0.87%)
Lysine (Lys, K)
n = 12 (3.47%)
Arginine (Arg, R)
n = 4 (1.16%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 23 | 5 | 31 | 13 | 7 | 26 | 3 | 9 | 11 | 0 | 2 | 2 | 1 | 0 | 9 | 7 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 0 | 0 | 0 | 8 | 7 | 6 | 1 | 1 | 7 | 5 | 0 | 2 | 9 | 7 | 0 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 13 | 24 | 0 | 6 | 9 | 11 | 0 | 2 | 3 | 10 | 2 | 1 | 0 | 13 | 9 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 5 | 0 | 0 | 0 | 10 | 2 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 45 | 85 | 143 | 74 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 33 | 111 | 65 | 138 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 7 | 86 | 156 | 98 | ||||||||||||
| ND3 (size: 1042 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.76%)
Alanine (Ala, A)
n = 22 (6.36%)
Serine (Ser, S)
n = 31 (8.96%)
Threonine (Thr, T)
n = 45 (13.01%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 5 (1.45%)
Leucine (Leu, L)
n = 58 (16.76%)
Isoleucine (Ile, I)
n = 28 (8.09%)
Methionine (Met, M)
n = 31 (8.96%)
Proline (Pro, P)
n = 18 (5.2%)
Phenylalanine (Phe, F)
n = 16 (4.62%)
Tyrosine (Tyr, Y)
n = 12 (3.47%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 22 (6.36%)
Glutamine (Gln, Q)
n = 11 (3.18%)
Histidine (His, H)
n = 3 (0.87%)
Lysine (Lys, K)
n = 12 (3.47%)
Arginine (Arg, R)
n = 4 (1.16%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 23 | 5 | 31 | 13 | 7 | 26 | 3 | 9 | 11 | 0 | 2 | 2 | 1 | 0 | 9 | 7 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 0 | 0 | 0 | 8 | 7 | 6 | 1 | 1 | 7 | 5 | 0 | 2 | 9 | 7 | 0 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 13 | 24 | 0 | 6 | 9 | 11 | 0 | 2 | 3 | 10 | 2 | 1 | 0 | 13 | 9 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 5 | 0 | 0 | 0 | 10 | 2 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 45 | 85 | 143 | 74 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 33 | 111 | 65 | 138 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 7 | 86 | 156 | 98 | ||||||||||||
| ND4 (size: 1378 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 16 (3.49%)
Alanine (Ala, A)
n = 26 (5.68%)
Serine (Ser, S)
n = 42 (9.17%)
Threonine (Thr, T)
n = 46 (10.04%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 11 (2.4%)
Leucine (Leu, L)
n = 87 (19.0%)
Isoleucine (Ile, I)
n = 41 (8.95%)
Methionine (Met, M)
n = 40 (8.73%)
Proline (Pro, P)
n = 21 (4.59%)
Phenylalanine (Phe, F)
n = 21 (4.59%)
Tyrosine (Tyr, Y)
n = 15 (3.28%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 2 (0.44%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 23 (5.02%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 13 (2.84%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 10 (2.18%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 27 | 14 | 33 | 12 | 17 | 32 | 6 | 18 | 9 | 1 | 2 | 2 | 5 | 2 | 11 | 10 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 7 | 1 | 3 | 5 | 14 | 6 | 1 | 4 | 5 | 6 | 1 | 8 | 10 | 3 | 0 | 11 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 14 | 20 | 1 | 8 | 11 | 11 | 0 | 5 | 7 | 11 | 4 | 3 | 2 | 11 | 12 | 6 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 7 | 7 | 2 | 0 | 2 | 9 | 1 | 0 | 2 | 8 | 0 | 0 | 0 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 64 | 121 | 172 | 102 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 54 | 123 | 82 | 200 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 27 | 134 | 176 | 122 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 9 (9.18%)
Serine (Ser, S)
n = 10 (10.2%)
Threonine (Thr, T)
n = 2 (2.04%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 10 (10.2%)
Methionine (Met, M)
n = 11 (11.22%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 3 (3.06%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 6 (6.12%)
Glutamine (Gln, Q)
n = 1 (1.02%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 5 | 5 | 10 | 1 | 4 | 9 | 1 | 6 | 1 | 0 | 0 | 1 | 2 | 0 | 4 | 0 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 2 | 1 | 1 | 5 | 3 | 0 | 2 | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 1 | 0 | 0 | 3 | 6 | 0 | 0 | 1 | 2 | 1 | 0 | 1 | 3 | 3 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 19 | 23 | 30 | 27 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 9 | 22 | 18 | 50 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 3 | 31 | 43 | 22 | ||||||||||||
| ND5 (size: 1806 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 26 (4.33%)
Alanine (Ala, A)
n = 38 (6.32%)
Serine (Ser, S)
n = 44 (7.32%)
Threonine (Thr, T)
n = 60 (9.98%)
Cysteine (Cys, C)
n = 6 (1.0%)
Valine (Val, V)
n = 18 (3.0%)
Leucine (Leu, L)
n = 98 (16.31%)
Isoleucine (Ile, I)
n = 61 (10.15%)
Methionine (Met, M)
n = 38 (6.32%)
Proline (Pro, P)
n = 28 (4.66%)
Phenylalanine (Phe, F)
n = 36 (5.99%)
Tyrosine (Tyr, Y)
n = 19 (3.16%)
Tryptophan (Trp, W)
n = 12 (2.0%)
Aspartic acid (Asp, D)
n = 14 (2.33%)
Glutamic acid (Glu, E)
n = 9 (1.5%)
Asparagine (Asn, N)
n = 33 (5.49%)
Glutamine (Gln, Q)
n = 17 (2.83%)
Histidine (His, H)
n = 15 (2.5%)
Lysine (Lys, K)
n = 21 (3.49%)
Arginine (Arg, R)
n = 8 (1.33%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 38 | 23 | 30 | 16 | 21 | 42 | 4 | 15 | 16 | 1 | 6 | 2 | 9 | 1 | 21 | 15 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 8 | 2 | 4 | 12 | 14 | 12 | 0 | 2 | 12 | 5 | 7 | 6 | 9 | 13 | 0 | 15 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 21 | 21 | 3 | 8 | 11 | 14 | 1 | 0 | 10 | 15 | 4 | 4 | 0 | 18 | 15 | 7 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 8 | 1 | 5 | 9 | 18 | 3 | 3 | 1 | 3 | 1 | 0 | 0 | 1 | 0 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 105 | 151 | 223 | 123 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 62 | 160 | 129 | 251 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 34 | 179 | 215 | 174 | ||||||||||||
| ND6 (size: 522 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 26 (15.03%)
Alanine (Ala, A)
n = 8 (4.62%)
Serine (Ser, S)
n = 11 (6.36%)
Threonine (Thr, T)
n = 5 (2.89%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 21 (12.14%)
Leucine (Leu, L)
n = 24 (13.87%)
Isoleucine (Ile, I)
n = 17 (9.83%)
Methionine (Met, M)
n = 10 (5.78%)
Proline (Pro, P)
n = 3 (1.73%)
Phenylalanine (Phe, F)
n = 8 (4.62%)
Tyrosine (Tyr, Y)
n = 10 (5.78%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 4 (2.31%)
Glutamic acid (Glu, E)
n = 10 (5.78%)
Asparagine (Asn, N)
n = 5 (2.89%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 3 (1.73%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 17 | 0 | 4 | 0 | 0 | 4 | 1 | 11 | 0 | 0 | 11 | 1 | 6 | 3 | 8 | 0 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 2 | 0 | 2 | 0 | 3 | 3 | 12 | 2 | 6 | 6 | 3 | 0 | 0 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 0 | 1 | 4 | 0 | 1 | 2 | 4 | 0 | 9 | 1 | 2 | 8 | 5 | 0 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 4 | 6 | 1 | 3 | 0 | 1 | 2 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 69 | 11 | 43 | 51 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 41 | 23 | 30 | 80 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 40 | 8 | 43 | 83 | ||||||||||||
| Total protein-coding genes (size: 11382 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 207 (5.46%)
Alanine (Ala, A)
n = 256 (6.75%)
Serine (Ser, S)
n = 274 (7.23%)
Threonine (Thr, T)
n = 327 (8.63%)
Cysteine (Cys, C)
n = 24 (0.63%)
Valine (Val, V)
n = 155 (4.09%)
Leucine (Leu, L)
n = 623 (16.43%)
Isoleucine (Ile, I)
n = 337 (8.89%)
Methionine (Met, M)
n = 240 (6.33%)
Proline (Pro, P)
n = 205 (5.41%)
Phenylalanine (Phe, F)
n = 226 (5.96%)
Tyrosine (Tyr, Y)
n = 139 (3.67%)
Tryptophan (Trp, W)
n = 101 (2.66%)
Aspartic acid (Asp, D)
n = 65 (1.71%)
Glutamic acid (Glu, E)
n = 85 (2.24%)
Asparagine (Asn, N)
n = 174 (4.59%)
Glutamine (Gln, Q)
n = 95 (2.51%)
Histidine (His, H)
n = 96 (2.53%)
Lysine (Lys, K)
n = 93 (2.45%)
Arginine (Arg, R)
n = 63 (1.66%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 234 | 103 | 201 | 94 | 100 | 241 | 37 | 129 | 84 | 11 | 51 | 30 | 62 | 12 | 122 | 104 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 39 | 10 | 14 | 57 | 104 | 84 | 11 | 44 | 70 | 70 | 23 | 57 | 75 | 71 | 2 | 75 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 99 | 143 | 10 | 53 | 72 | 93 | 4 | 16 | 36 | 100 | 39 | 21 | 22 | 92 | 82 | 38 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 58 | 66 | 19 | 33 | 32 | 82 | 11 | 14 | 19 | 27 | 3 | 1 | 0 | 4 | 2 | 80 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 768 | 931 | 1224 | 869 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 448 | 1010 | 753 | 1581 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 227 | 1037 | 1438 | 1090 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​T​r​a​c​h​y​p​i​t​h​e​c​u​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ v​e​t​u​l​u​s​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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