Viewing data for Sylvia atricapilla


Scientific name Sylvia atricapilla
Common name Blackcap
Maximum lifespan 13.80 years (Sylvia atricapilla@AnAge)

Total mtDNA (size: 17937 bases) GC AT G C A T
Base content (bases) 7975 9962 5402 2573 4530 5432
Base content per 1 kb (bases) 445 555 301 143 253 303
Base content (%) 44.5% 55.5%
Total protein-coding genes (size: 11376 bases) GC AT G C A T
Base content (bases) 5087 6289 3663 1424 2832 3457
Base content per 1 kb (bases) 447 553 322 125 249 304
Base content (%) 44.7% 55.3%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1544 bases) GC AT G C A T
Base content (bases) 649 895 371 278 399 496
Base content per 1 kb (bases) 420 580 240 180 258 321
Base content (%) 42.0% 58.0%
Total rRNA-coding genes (size: 2575 bases) GC AT G C A T
Base content (bases) 1166 1409 634 532 552 857
Base content per 1 kb (bases) 453 547 246 207 214 333
Base content (%) 45.3% 54.7%
12S rRNA gene (size: 976 bases) GC AT G C A T
Base content (bases) 478 498 263 215 202 296
Base content per 1 kb (bases) 490 510 269 220 207 303
Base content (%) 49.0% 51.0%
16S rRNA gene (size: 1599 bases) GC AT G C A T
Base content (bases) 688 911 371 317 350 561
Base content per 1 kb (bases) 430 570 232 198 219 351
Base content (%) 43.0% 57.0%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 288 396 221 67 175 221
Base content per 1 kb (bases) 421 579 323 98 256 323
Base content (%) 42.1% 57.9%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 70 98 62 8 42 56
Base content per 1 kb (bases) 417 583 369 48 250 333
Base content (%) 41.7% 58.3%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 715 836 462 253 393 443
Base content per 1 kb (bases) 461 539 298 163 253 286
Base content (%) 46.1% 53.9%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 316 368 217 99 164 204
Base content per 1 kb (bases) 462 538 317 145 240 298
Base content (%) 46.2% 53.8%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 364 420 242 122 206 214
Base content per 1 kb (bases) 464 536 309 156 263 273
Base content (%) 46.4% 53.6%
CYTB (size: 1142 bases) GC AT G C A T
Base content (bases) 541 601 386 155 297 304
Base content per 1 kb (bases) 474 526 338 136 260 266
Base content (%) 47.4% 52.6%
ND1 (size: 978 bases) GC AT G C A T
Base content (bases) 442 536 312 130 262 274
Base content per 1 kb (bases) 452 548 319 133 268 280
Base content (%) 45.2% 54.8%
ND2 (size: 1040 bases) GC AT G C A T
Base content (bases) 447 593 341 106 263 330
Base content per 1 kb (bases) 430 570 328 102 253 317
Base content (%) 43.0% 57.0%
ND3 (size: 350 bases) GC AT G C A T
Base content (bases) 157 193 112 45 100 93
Base content per 1 kb (bases) 449 551 320 129 286 266
Base content (%) 44.9% 55.1%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 598 780 455 143 338 442
Base content per 1 kb (bases) 434 566 330 104 245 321
Base content (%) 43.4% 56.6%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 143 154 103 40 71 83
Base content per 1 kb (bases) 481 519 347 135 239 279
Base content (%) 48.1% 51.9%
ND5 (size: 1818 bases) GC AT G C A T
Base content (bases) 772 1046 562 210 456 590
Base content per 1 kb (bases) 425 575 309 116 251 325
Base content (%) 42.5% 57.5%
ND6 (size: 519 bases) GC AT G C A T
Base content (bases) 239 280 191 48 69 211
Base content per 1 kb (bases) 461 539 368 92 133 407
Base content (%) 46.1% 53.9%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (3.08%)
Alanine (Ala, A)
n = 16 (7.05%)
Serine (Ser, S)
n = 17 (7.49%)
Threonine (Thr, T)
n = 25 (11.01%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 7 (3.08%)
Leucine (Leu, L)
n = 59 (25.99%)
Isoleucine (Ile, I)
n = 19 (8.37%)
Methionine (Met, M)
n = 11 (4.85%)
Proline (Pro, P)
n = 15 (6.61%)
Phenylalanine (Phe, F)
n = 9 (3.96%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 3 (1.32%)
Aspartic acid (Asp, D)
n = 2 (0.88%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 10 (4.41%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 13 9 4 5 35 7 8 8 0 1 2 4 0 1 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 2 8 6 0 1 5 1 0 3 1 11 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 12 0 5 0 8 0 1 3 2 1 1 0 0 10 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 2 0 2 4 0 1 2 2 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
36 82 73 37
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
19 69 35 105
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 70 113 33
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPNPWFFIMLTSWLTFSLIIQPKLLSFLSTNPPSNKTPTTTSTTPWTWPWT*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 6 (10.91%)
Threonine (Thr, T)
n = 11 (20.0%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 7 (12.73%)
Isoleucine (Ile, I)
n = 3 (5.45%)
Methionine (Met, M)
n = 2 (3.64%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 4 (7.27%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 3 0 0 1 5 0 1 2 0 0 0 0 0 2 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 0 0 0 0 0 0 0 2 3 4 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 2 0 0 3 2 0 1 0 0 0 0 0 0 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
0 17 23 16
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 25 9 16
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
2 20 24 10
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 47 (9.11%)
Serine (Ser, S)
n = 27 (5.23%)
Threonine (Thr, T)
n = 37 (7.17%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 37 (7.17%)
Leucine (Leu, L)
n = 64 (12.4%)
Isoleucine (Ile, I)
n = 43 (8.33%)
Methionine (Met, M)
n = 22 (4.26%)
Proline (Pro, P)
n = 30 (5.81%)
Phenylalanine (Phe, F)
n = 41 (7.95%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 9 (1.74%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 29 19 7 11 37 5 4 7 2 5 7 23 2 8 33
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 8 18 21 0 8 12 24 3 7 8 14 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 18 1 7 7 9 0 0 4 1 17 0 0 1 14 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 10 0 3 12 8 1 0 2 6 0 0 1 0 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
156 126 131 104
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 137 95 207
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 199 217 82
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 20 (8.81%)
Serine (Ser, S)
n = 19 (8.37%)
Threonine (Thr, T)
n = 17 (7.49%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 17 (7.49%)
Leucine (Leu, L)
n = 32 (14.1%)
Isoleucine (Ile, I)
n = 16 (7.05%)
Methionine (Met, M)
n = 6 (2.64%)
Proline (Pro, P)
n = 11 (4.85%)
Phenylalanine (Phe, F)
n = 10 (4.41%)
Tyrosine (Tyr, Y)
n = 7 (3.08%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 12 (5.29%)
Glutamic acid (Glu, E)
n = 11 (4.85%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 8 (3.52%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 13 5 7 6 15 1 3 5 2 3 7 6 1 2 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 2 6 11 3 0 1 0 7 0 1 3 7 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 8 0 1 6 9 0 0 3 0 7 0 0 0 8 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 10 1 5 7 4 0 1 1 4 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 61 54 45
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 64 58 81
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 92 92 38
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 24 (9.23%)
Serine (Ser, S)
n = 18 (6.92%)
Threonine (Thr, T)
n = 21 (8.08%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 18 (6.92%)
Leucine (Leu, L)
n = 31 (11.92%)
Isoleucine (Ile, I)
n = 13 (5.0%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 24 (9.23%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 3 (1.15%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 4 (1.54%)
Arginine (Arg, R)
n = 6 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 7 6 2 4 15 3 7 7 0 2 6 10 0 5 19
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 5 12 7 0 1 9 9 0 1 4 7 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 8 1 3 5 6 0 1 3 1 10 0 0 0 3 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 8 0 2 2 4 0 1 3 2 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 66 53 69
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 72 53 94
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 104 108 42
CYTB (size: 1142 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.33%)
Alanine (Ala, A)
n = 29 (7.65%)
Serine (Ser, S)
n = 26 (6.86%)
Threonine (Thr, T)
n = 21 (5.54%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 21 (5.54%)
Leucine (Leu, L)
n = 65 (17.15%)
Isoleucine (Ile, I)
n = 34 (8.97%)
Methionine (Met, M)
n = 9 (2.37%)
Proline (Pro, P)
n = 25 (6.6%)
Phenylalanine (Phe, F)
n = 27 (7.12%)
Tyrosine (Tyr, Y)
n = 12 (3.17%)
Tryptophan (Trp, W)
n = 11 (2.9%)
Aspartic acid (Asp, D)
n = 9 (2.37%)
Glutamic acid (Glu, E)
n = 7 (1.85%)
Asparagine (Asn, N)
n = 19 (5.01%)
Glutamine (Gln, Q)
n = 7 (1.85%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 27 6 9 18 32 3 2 5 2 3 7 11 0 3 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 3 10 14 5 0 4 10 9 1 4 9 10 2 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 11 2 7 7 10 1 0 1 0 12 0 1 4 15 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 5 2 2 7 10 0 1 1 6 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
90 114 94 82
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
48 100 76 156
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 172 133 58
ND1 (size: 978 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.31%)
Alanine (Ala, A)
n = 31 (9.54%)
Serine (Ser, S)
n = 23 (7.08%)
Threonine (Thr, T)
n = 20 (6.15%)
Cysteine (Cys, C)
n = 3 (0.92%)
Valine (Val, V)
n = 13 (4.0%)
Leucine (Leu, L)
n = 68 (20.92%)
Isoleucine (Ile, I)
n = 22 (6.77%)
Methionine (Met, M)
n = 13 (4.0%)
Proline (Pro, P)
n = 25 (7.69%)
Phenylalanine (Phe, F)
n = 18 (5.54%)
Tyrosine (Tyr, Y)
n = 16 (4.92%)
Tryptophan (Trp, W)
n = 8 (2.46%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.38%)
Asparagine (Asn, N)
n = 13 (4.0%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 2 (0.62%)
Lysine (Lys, K)
n = 7 (2.15%)
Arginine (Arg, R)
n = 8 (2.46%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 14 10 9 13 32 2 12 6 0 1 5 7 0 4 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 2 8 11 12 0 1 6 4 3 4 9 12 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 13 0 3 9 5 1 0 5 6 10 1 0 4 9 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 5 6 1 3 6 1 2 3 2 1 1 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 97 81 75
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 94 59 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 121 134 53
ND2 (size: 1040 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.77%)
Alanine (Ala, A)
n = 25 (7.25%)
Serine (Ser, S)
n = 30 (8.7%)
Threonine (Thr, T)
n = 46 (13.33%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 9 (2.61%)
Leucine (Leu, L)
n = 60 (17.39%)
Isoleucine (Ile, I)
n = 33 (9.57%)
Methionine (Met, M)
n = 19 (5.51%)
Proline (Pro, P)
n = 22 (6.38%)
Phenylalanine (Phe, F)
n = 14 (4.06%)
Tyrosine (Tyr, Y)
n = 7 (2.03%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 13 (3.77%)
Glutamine (Gln, Q)
n = 10 (2.9%)
Histidine (His, H)
n = 11 (3.19%)
Lysine (Lys, K)
n = 14 (4.06%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 24 14 9 5 34 5 6 8 2 2 2 5 0 1 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 2 6 9 10 0 2 3 7 1 1 8 11 2 15
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 13 0 6 13 6 0 0 5 2 5 0 1 5 8 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 3 1 0 1 10 4 1 0 2 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
52 99 130 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 118 60 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 124 139 62
ND3 (size: 1040 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.77%)
Alanine (Ala, A)
n = 25 (7.25%)
Serine (Ser, S)
n = 30 (8.7%)
Threonine (Thr, T)
n = 46 (13.33%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 9 (2.61%)
Leucine (Leu, L)
n = 60 (17.39%)
Isoleucine (Ile, I)
n = 33 (9.57%)
Methionine (Met, M)
n = 19 (5.51%)
Proline (Pro, P)
n = 22 (6.38%)
Phenylalanine (Phe, F)
n = 14 (4.06%)
Tyrosine (Tyr, Y)
n = 7 (2.03%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 13 (3.77%)
Glutamine (Gln, Q)
n = 10 (2.9%)
Histidine (His, H)
n = 11 (3.19%)
Lysine (Lys, K)
n = 14 (4.06%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 24 14 9 5 34 5 6 8 2 2 2 5 0 1 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 2 6 9 10 0 2 3 7 1 1 8 11 2 15
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 13 0 6 13 6 0 0 5 2 5 0 1 5 8 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 3 1 0 1 10 4 1 0 2 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
52 99 130 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 118 60 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 124 139 62
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.93%)
Alanine (Ala, A)
n = 33 (7.21%)
Serine (Ser, S)
n = 35 (7.64%)
Threonine (Thr, T)
n = 49 (10.7%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 11 (2.4%)
Leucine (Leu, L)
n = 93 (20.31%)
Isoleucine (Ile, I)
n = 45 (9.83%)
Methionine (Met, M)
n = 27 (5.9%)
Proline (Pro, P)
n = 29 (6.33%)
Phenylalanine (Phe, F)
n = 15 (3.28%)
Tyrosine (Tyr, Y)
n = 13 (2.84%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 10 (2.18%)
Asparagine (Asn, N)
n = 13 (2.84%)
Glutamine (Gln, Q)
n = 13 (2.84%)
Histidine (His, H)
n = 15 (3.28%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 30 25 10 12 54 4 12 11 2 4 3 4 0 2 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 4 4 15 14 0 0 8 9 1 5 11 12 1 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 21 1 3 10 14 0 1 7 2 11 2 1 4 9 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 10 0 0 3 9 1 1 2 8 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 148 152 84
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 138 77 191
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 169 213 62
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 9 (9.18%)
Serine (Ser, S)
n = 11 (11.22%)
Threonine (Thr, T)
n = 10 (10.2%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 19 (19.39%)
Isoleucine (Ile, I)
n = 5 (5.1%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 4 (4.08%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 2 (2.04%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 6 (6.12%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 3 4 0 0 15 1 2 3 0 0 2 1 0 0 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 1 5 3 0 0 3 0 1 0 3 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 3 0 3 1 2 1 0 4 0 2 0 1 0 2 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 1 1 0 1 0 0 0 0 2 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
19 31 27 22
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 30 17 38
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 42 39 11
ND5 (size: 1818 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 32 (5.29%)
Alanine (Ala, A)
n = 50 (8.26%)
Serine (Ser, S)
n = 46 (7.6%)
Threonine (Thr, T)
n = 63 (10.41%)
Cysteine (Cys, C)
n = 6 (0.99%)
Valine (Val, V)
n = 19 (3.14%)
Leucine (Leu, L)
n = 100 (16.53%)
Isoleucine (Ile, I)
n = 51 (8.43%)
Methionine (Met, M)
n = 33 (5.45%)
Proline (Pro, P)
n = 29 (4.79%)
Phenylalanine (Phe, F)
n = 37 (6.12%)
Tyrosine (Tyr, Y)
n = 14 (2.31%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 10 (1.65%)
Glutamic acid (Glu, E)
n = 11 (1.82%)
Asparagine (Asn, N)
n = 32 (5.29%)
Glutamine (Gln, Q)
n = 17 (2.81%)
Histidine (His, H)
n = 14 (2.31%)
Lysine (Lys, K)
n = 21 (3.47%)
Arginine (Arg, R)
n = 8 (1.32%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 34 30 7 20 51 7 14 15 2 0 8 10 1 9 28
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 3 3 6 29 15 0 5 4 20 3 8 5 16 0 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
24 29 0 10 13 15 1 1 6 5 9 2 1 6 26 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 10 1 3 7 20 1 0 1 7 0 1 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
122 153 208 123
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
66 181 119 240
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 228 263 93
ND6 (size: 519 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (17.44%)
Alanine (Ala, A)
n = 10 (5.81%)
Serine (Ser, S)
n = 12 (6.98%)
Threonine (Thr, T)
n = 3 (1.74%)
Cysteine (Cys, C)
n = 1 (0.58%)
Valine (Val, V)
n = 33 (19.19%)
Leucine (Leu, L)
n = 28 (16.28%)
Isoleucine (Ile, I)
n = 8 (4.65%)
Methionine (Met, M)
n = 8 (4.65%)
Proline (Pro, P)
n = 4 (2.33%)
Phenylalanine (Phe, F)
n = 7 (4.07%)
Tyrosine (Tyr, Y)
n = 7 (4.07%)
Tryptophan (Trp, W)
n = 6 (3.49%)
Aspartic acid (Asp, D)
n = 5 (2.91%)
Glutamic acid (Glu, E)
n = 3 (1.74%)
Asparagine (Asn, N)
n = 2 (1.16%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 4 (2.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 0 1 2 0 0 6 6 0 0 16 1 6 10 7 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 1 0 5 0 4 1 11 1 3 15 3 0 0 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 7 0 1 2 2 0 5 2 4 14 2 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 3 4 1 0 1 0 0 1 3 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 16 24 52
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 27 19 84
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
67 5 26 75
Total protein-coding genes (size: 11393 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 221 (5.82%)
Alanine (Ala, A)
n = 302 (7.96%)
Serine (Ser, S)
n = 278 (7.33%)
Threonine (Thr, T)
n = 332 (8.75%)
Cysteine (Cys, C)
n = 29 (0.76%)
Valine (Val, V)
n = 190 (5.01%)
Leucine (Leu, L)
n = 657 (17.32%)
Isoleucine (Ile, I)
n = 299 (7.88%)
Methionine (Met, M)
n = 170 (4.48%)
Proline (Pro, P)
n = 223 (5.88%)
Phenylalanine (Phe, F)
n = 218 (5.75%)
Tyrosine (Tyr, Y)
n = 112 (2.95%)
Tryptophan (Trp, W)
n = 106 (2.79%)
Aspartic acid (Asp, D)
n = 69 (1.82%)
Glutamic acid (Glu, E)
n = 87 (2.29%)
Asparagine (Asn, N)
n = 137 (3.61%)
Glutamine (Gln, Q)
n = 93 (2.45%)
Histidine (His, H)
n = 106 (2.79%)
Lysine (Lys, K)
n = 87 (2.29%)
Arginine (Arg, R)
n = 71 (1.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
96 203 133 70 102 334 47 85 81 12 37 51 88 14 48 170
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
37 8 21 64 135 102 1 35 63 95 28 40 67 108 8 65
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
122 140 5 56 77 89 7 7 42 24 88 12 19 26 111 32
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
74 70 17 20 49 78 9 8 16 43 4 2 1 5 0 94
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
869 1046 1077 803
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
479 1086 696 1534
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
221 1391 1547 636 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​S​y​l​v​i​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ a​t​r​i​c​a​p​i​l​l​a​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.