Viewing data for Heterocephalus glaber


Scientific name Heterocephalus glaber
Common name Naked mole-rat
Maximum lifespan 31.00 years (Heterocephalus glaber@AnAge)

Total mtDNA (size: 16386 bases) GC AT G C A T
Base content (bases) 6758 9628 4578 2180 4106 5522
Base content per 1 kb (bases) 412 588 279 133 251 337
Base content (%) 41.2% 58.8%
Total protein-coding genes (size: 11339 bases) GC AT G C A T
Base content (bases) 4792 6547 3415 1377 2858 3689
Base content per 1 kb (bases) 423 577 301 121 252 325
Base content (%) 42.3% 57.7%
D-loop (size: 961 bases) GC AT G C A T
Base content (bases) 409 552 272 137 259 293
Base content per 1 kb (bases) 426 574 283 143 270 305
Base content (%) 42.6% 57.4%
Total tRNA-coding genes (size: 1504 bases) GC AT G C A T
Base content (bases) 568 936 345 223 391 545
Base content per 1 kb (bases) 378 622 229 148 260 362
Base content (%) 37.8% 62.2%
Total rRNA-coding genes (size: 2518 bases) GC AT G C A T
Base content (bases) 966 1552 533 433 589 963
Base content per 1 kb (bases) 384 616 212 172 234 382
Base content (%) 38.4% 61.6%
12S rRNA gene (size: 967 bases) GC AT G C A T
Base content (bases) 384 583 211 173 228 355
Base content per 1 kb (bases) 397 603 218 179 236 367
Base content (%) 39.7% 60.3%
16S rRNA gene (size: 1551 bases) GC AT G C A T
Base content (bases) 582 969 322 260 361 608
Base content per 1 kb (bases) 375 625 208 168 233 392
Base content (%) 37.5% 62.5%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 287 394 225 62 165 229
Base content per 1 kb (bases) 421 579 330 91 242 336
Base content (%) 42.1% 57.9%
ATP8 (size: 204 bases) GC AT G C A T
Base content (bases) 69 135 57 12 47 88
Base content per 1 kb (bases) 338 662 279 59 230 431
Base content (%) 33.8% 66.2%
COX1 (size: 1542 bases) GC AT G C A T
Base content (bases) 689 853 433 256 404 449
Base content per 1 kb (bases) 447 553 281 166 262 291
Base content (%) 44.7% 55.3%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 284 400 190 94 170 230
Base content per 1 kb (bases) 415 585 278 137 249 336
Base content (%) 41.5% 58.5%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 362 422 238 124 202 220
Base content per 1 kb (bases) 462 538 304 158 258 281
Base content (%) 46.2% 53.8%
CYTB (size: 1135 bases) GC AT G C A T
Base content (bases) 500 635 351 149 285 350
Base content per 1 kb (bases) 441 559 309 131 251 308
Base content (%) 44.1% 55.9%
ND1 (size: 958 bases) GC AT G C A T
Base content (bases) 411 547 300 111 240 307
Base content per 1 kb (bases) 429 571 313 116 251 320
Base content (%) 42.9% 57.1%
ND2 (size: 1042 bases) GC AT G C A T
Base content (bases) 423 619 329 94 251 368
Base content per 1 kb (bases) 406 594 316 90 241 353
Base content (%) 40.6% 59.4%
ND3 (size: 346 bases) GC AT G C A T
Base content (bases) 151 195 109 42 90 105
Base content per 1 kb (bases) 436 564 315 121 260 303
Base content (%) 43.6% 56.4%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 599 779 456 143 336 443
Base content per 1 kb (bases) 435 565 331 104 244 321
Base content (%) 43.5% 56.5%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 122 175 85 37 82 93
Base content per 1 kb (bases) 411 589 286 125 276 313
Base content (%) 41.1% 58.9%
ND5 (size: 1812 bases) GC AT G C A T
Base content (bases) 722 1090 517 205 485 605
Base content per 1 kb (bases) 398 602 285 113 268 334
Base content (%) 39.8% 60.2%
ND6 (size: 531 bases) GC AT G C A T
Base content (bases) 195 336 142 53 114 222
Base content per 1 kb (bases) 367 633 267 100 215 418
Base content (%) 36.7% 63.3%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.54%)
Alanine (Ala, A)
n = 14 (6.19%)
Serine (Ser, S)
n = 14 (6.19%)
Threonine (Thr, T)
n = 27 (11.95%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 7 (3.1%)
Leucine (Leu, L)
n = 45 (19.91%)
Isoleucine (Ile, I)
n = 25 (11.06%)
Methionine (Met, M)
n = 15 (6.64%)
Proline (Pro, P)
n = 13 (5.75%)
Phenylalanine (Phe, F)
n = 10 (4.42%)
Tyrosine (Tyr, Y)
n = 3 (1.33%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 13 (5.75%)
Glutamine (Gln, Q)
n = 8 (3.54%)
Histidine (His, H)
n = 5 (2.21%)
Lysine (Lys, K)
n = 6 (2.65%)
Arginine (Arg, R)
n = 6 (2.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 18 12 2 10 21 4 8 7 1 0 3 4 0 6 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 3 9 2 0 0 4 4 0 1 5 6 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 14 0 1 5 5 0 1 2 1 2 0 0 1 12 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 3 0 0 1 6 0 0 2 4 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
33 69 89 36
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
20 65 40 102
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 91 100 27
ATP8 (size: 204 bases)
Amino acid sequence: MPQLDTSTWFMMITTMMITLFIMFQLKMLNYHYPNDIKTKSTLRTKQHTPWEKKWTKIYLPPSPHQH*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 3 (4.48%)
Threonine (Thr, T)
n = 10 (14.93%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 6 (8.96%)
Isoleucine (Ile, I)
n = 5 (7.46%)
Methionine (Met, M)
n = 7 (10.45%)
Proline (Pro, P)
n = 6 (8.96%)
Phenylalanine (Phe, F)
n = 3 (4.48%)
Tyrosine (Tyr, Y)
n = 3 (4.48%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 2 (2.99%)
Glutamic acid (Glu, E)
n = 1 (1.49%)
Asparagine (Asn, N)
n = 2 (2.99%)
Glutamine (Gln, Q)
n = 4 (5.97%)
Histidine (His, H)
n = 4 (5.97%)
Lysine (Lys, K)
n = 7 (10.45%)
Arginine (Arg, R)
n = 1 (1.49%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 3 6 0 1 4 0 0 3 1 0 0 0 0 3 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 0 0 0 0 0 0 0 2 2 2 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 4 2 1 0 2 0 0 0 1 2 0 1 0 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 1 0 0 2 7 0 0 1 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
3 20 31 14
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
4 19 24 21
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 18 33 12
COX1 (size: 1542 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.97%)
Alanine (Ala, A)
n = 39 (7.6%)
Serine (Ser, S)
n = 31 (6.04%)
Threonine (Thr, T)
n = 39 (7.6%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 33 (6.43%)
Leucine (Leu, L)
n = 58 (11.31%)
Isoleucine (Ile, I)
n = 40 (7.8%)
Methionine (Met, M)
n = 37 (7.21%)
Proline (Pro, P)
n = 29 (5.65%)
Phenylalanine (Phe, F)
n = 43 (8.38%)
Tyrosine (Tyr, Y)
n = 18 (3.51%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 16 (3.12%)
Glutamic acid (Glu, E)
n = 10 (1.95%)
Asparagine (Asn, N)
n = 15 (2.92%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 17 (3.31%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 22 32 4 7 31 8 4 6 1 3 12 17 1 9 34
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 0 4 14 21 0 6 8 24 8 4 11 12 2 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 19 3 5 14 7 2 0 3 5 13 1 4 3 12 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 8 2 2 14 9 0 1 1 6 0 0 0 1 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
144 111 143 116
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
75 135 93 211
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
37 187 213 77
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 6 (2.64%)
Serine (Ser, S)
n = 23 (10.13%)
Threonine (Thr, T)
n = 19 (8.37%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 14 (6.17%)
Leucine (Leu, L)
n = 31 (13.66%)
Isoleucine (Ile, I)
n = 16 (7.05%)
Methionine (Met, M)
n = 15 (6.61%)
Proline (Pro, P)
n = 15 (6.61%)
Phenylalanine (Phe, F)
n = 7 (3.08%)
Tyrosine (Tyr, Y)
n = 10 (4.41%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 10 (4.41%)
Glutamic acid (Glu, E)
n = 14 (6.17%)
Asparagine (Asn, N)
n = 6 (2.64%)
Glutamine (Gln, Q)
n = 6 (2.64%)
Histidine (His, H)
n = 7 (3.08%)
Lysine (Lys, K)
n = 6 (2.64%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 8 12 4 5 16 3 3 6 0 1 3 8 2 3 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 1 1 3 2 0 2 0 5 1 2 7 6 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 8 1 3 5 9 0 1 5 3 7 0 0 2 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 12 2 3 7 5 1 1 0 4 1 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
52 62 68 46
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
28 57 60 83
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 71 102 41
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 17 (6.54%)
Serine (Ser, S)
n = 18 (6.92%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 14 (5.38%)
Leucine (Leu, L)
n = 32 (12.31%)
Isoleucine (Ile, I)
n = 19 (7.31%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 10 (3.85%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 6 (2.31%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 18 (6.92%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 11 6 3 4 20 1 4 6 1 1 5 5 3 9 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 1 0 10 6 1 2 3 13 3 4 5 3 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 9 2 1 8 5 0 0 4 2 8 2 0 1 5 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 7 1 0 3 3 0 0 0 5 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
63 70 63 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 65 55 97
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 103 102 39
CYTB (size: 1135 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.37%)
Alanine (Ala, A)
n = 22 (5.84%)
Serine (Ser, S)
n = 28 (7.43%)
Threonine (Thr, T)
n = 25 (6.63%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 14 (3.71%)
Leucine (Leu, L)
n = 53 (14.06%)
Isoleucine (Ile, I)
n = 41 (10.88%)
Methionine (Met, M)
n = 19 (5.04%)
Proline (Pro, P)
n = 23 (6.1%)
Phenylalanine (Phe, F)
n = 28 (7.43%)
Tyrosine (Tyr, Y)
n = 18 (4.77%)
Tryptophan (Trp, W)
n = 11 (2.92%)
Aspartic acid (Asp, D)
n = 10 (2.65%)
Glutamic acid (Glu, E)
n = 6 (1.59%)
Asparagine (Asn, N)
n = 14 (3.71%)
Glutamine (Gln, Q)
n = 7 (1.86%)
Histidine (His, H)
n = 13 (3.45%)
Lysine (Lys, K)
n = 10 (2.65%)
Arginine (Arg, R)
n = 8 (2.12%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 34 16 4 6 29 6 6 6 1 2 2 9 1 3 25
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 3 1 11 10 0 4 4 14 2 4 7 12 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 13 2 2 7 11 3 0 5 2 16 1 2 1 13 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 6 0 2 8 10 0 0 2 6 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 96 114 92
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
52 93 78 155
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 162 158 37
ND1 (size: 958 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.4%)
Alanine (Ala, A)
n = 26 (8.18%)
Serine (Ser, S)
n = 27 (8.49%)
Threonine (Thr, T)
n = 23 (7.23%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 8 (2.52%)
Leucine (Leu, L)
n = 56 (17.61%)
Isoleucine (Ile, I)
n = 30 (9.43%)
Methionine (Met, M)
n = 21 (6.6%)
Proline (Pro, P)
n = 22 (6.92%)
Phenylalanine (Phe, F)
n = 18 (5.66%)
Tyrosine (Tyr, Y)
n = 12 (3.77%)
Tryptophan (Trp, W)
n = 9 (2.83%)
Aspartic acid (Asp, D)
n = 3 (0.94%)
Glutamic acid (Glu, E)
n = 11 (3.46%)
Asparagine (Asn, N)
n = 12 (3.77%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 4 (1.26%)
Lysine (Lys, K)
n = 9 (2.83%)
Arginine (Arg, R)
n = 7 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 23 19 3 7 34 2 8 5 1 0 4 4 0 6 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 0 2 13 11 0 0 5 9 0 2 10 9 1 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 11 0 3 8 12 1 0 3 1 11 1 2 6 6 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 9 2 1 2 7 2 0 0 6 1 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
62 85 98 74
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 95 57 133
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 120 152 32
ND2 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 18 (5.2%)
Serine (Ser, S)
n = 39 (11.27%)
Threonine (Thr, T)
n = 34 (9.83%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 7 (2.02%)
Leucine (Leu, L)
n = 60 (17.34%)
Isoleucine (Ile, I)
n = 36 (10.4%)
Methionine (Met, M)
n = 34 (9.83%)
Proline (Pro, P)
n = 17 (4.91%)
Phenylalanine (Phe, F)
n = 11 (3.18%)
Tyrosine (Tyr, Y)
n = 11 (3.18%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 17 (4.91%)
Glutamine (Gln, Q)
n = 12 (3.47%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 10 (2.89%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 27 31 4 11 37 3 5 12 0 0 2 3 2 2 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 3 9 6 0 1 4 6 3 1 9 7 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 23 1 4 14 16 0 1 4 0 11 2 0 2 15 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 4 1 0 0 9 1 0 1 2 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
44 94 136 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 103 62 148
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 132 170 29
ND3 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 18 (5.2%)
Serine (Ser, S)
n = 39 (11.27%)
Threonine (Thr, T)
n = 34 (9.83%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 7 (2.02%)
Leucine (Leu, L)
n = 60 (17.34%)
Isoleucine (Ile, I)
n = 36 (10.4%)
Methionine (Met, M)
n = 34 (9.83%)
Proline (Pro, P)
n = 17 (4.91%)
Phenylalanine (Phe, F)
n = 11 (3.18%)
Tyrosine (Tyr, Y)
n = 11 (3.18%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 17 (4.91%)
Glutamine (Gln, Q)
n = 12 (3.47%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 10 (2.89%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 27 31 4 11 37 3 5 12 0 0 2 3 2 2 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 3 9 6 0 1 4 6 3 1 9 7 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 23 1 4 14 16 0 1 4 0 11 2 0 2 15 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 4 1 0 0 9 1 0 1 2 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
44 94 136 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 103 62 148
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 132 170 29
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 27 (5.9%)
Serine (Ser, S)
n = 43 (9.39%)
Threonine (Thr, T)
n = 42 (9.17%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 12 (2.62%)
Leucine (Leu, L)
n = 94 (20.52%)
Isoleucine (Ile, I)
n = 42 (9.17%)
Methionine (Met, M)
n = 29 (6.33%)
Proline (Pro, P)
n = 25 (5.46%)
Phenylalanine (Phe, F)
n = 19 (4.15%)
Tyrosine (Tyr, Y)
n = 15 (3.28%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 22 (4.8%)
Glutamine (Gln, Q)
n = 8 (1.75%)
Histidine (His, H)
n = 12 (2.62%)
Lysine (Lys, K)
n = 14 (3.06%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 34 25 9 20 51 4 9 6 2 2 2 7 1 5 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 4 5 14 6 2 0 6 11 0 3 12 10 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 22 1 3 13 15 1 1 10 2 13 2 1 3 19 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 8 1 0 3 13 1 0 2 7 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 139 160 92
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 126 83 196
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 191 200 47
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 8 (8.16%)
Serine (Ser, S)
n = 12 (12.24%)
Threonine (Thr, T)
n = 5 (5.1%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 6 (6.12%)
Leucine (Leu, L)
n = 18 (18.37%)
Isoleucine (Ile, I)
n = 4 (4.08%)
Methionine (Met, M)
n = 15 (15.31%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 3 (3.06%)
Tyrosine (Tyr, Y)
n = 6 (6.12%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 5 (5.1%)
Glutamine (Gln, Q)
n = 1 (1.02%)
Histidine (His, H)
n = 2 (2.04%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 3 12 0 2 11 2 2 1 0 1 1 4 0 0 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 2 2 3 3 0 1 1 2 0 0 1 0 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 1 0 0 6 5 1 0 0 1 5 0 1 0 5 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 0 1 0 0 0 0 0 2 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
21 21 29 28
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
9 26 18 46
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 38 46 8
ND5 (size: 1812 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (4.15%)
Alanine (Ala, A)
n = 39 (6.47%)
Serine (Ser, S)
n = 65 (10.78%)
Threonine (Thr, T)
n = 45 (7.46%)
Cysteine (Cys, C)
n = 4 (0.66%)
Valine (Val, V)
n = 17 (2.82%)
Leucine (Leu, L)
n = 85 (14.1%)
Isoleucine (Ile, I)
n = 61 (10.12%)
Methionine (Met, M)
n = 46 (7.63%)
Proline (Pro, P)
n = 26 (4.31%)
Phenylalanine (Phe, F)
n = 39 (6.47%)
Tyrosine (Tyr, Y)
n = 20 (3.32%)
Tryptophan (Trp, W)
n = 12 (1.99%)
Aspartic acid (Asp, D)
n = 12 (1.99%)
Glutamic acid (Glu, E)
n = 11 (1.82%)
Asparagine (Asn, N)
n = 36 (5.97%)
Glutamine (Gln, Q)
n = 18 (2.99%)
Histidine (His, H)
n = 12 (1.99%)
Lysine (Lys, K)
n = 22 (3.65%)
Arginine (Arg, R)
n = 8 (1.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 40 38 5 11 46 5 16 16 2 1 4 10 2 12 27
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 2 2 3 17 18 1 2 8 12 3 9 12 3 2 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 20 3 10 15 24 1 5 10 6 14 1 2 8 28 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 9 2 3 9 18 4 0 1 7 0 0 0 0 1 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
104 131 225 144
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
64 160 132 248
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
37 226 248 93
ND6 (size: 531 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.2%)
Alanine (Ala, A)
n = 6 (3.41%)
Serine (Ser, S)
n = 15 (8.52%)
Threonine (Thr, T)
n = 5 (2.84%)
Cysteine (Cys, C)
n = 2 (1.14%)
Valine (Val, V)
n = 22 (12.5%)
Leucine (Leu, L)
n = 20 (11.36%)
Isoleucine (Ile, I)
n = 13 (7.39%)
Methionine (Met, M)
n = 11 (6.25%)
Proline (Pro, P)
n = 4 (2.27%)
Phenylalanine (Phe, F)
n = 12 (6.82%)
Tyrosine (Tyr, Y)
n = 14 (7.95%)
Tryptophan (Trp, W)
n = 6 (3.41%)
Aspartic acid (Asp, D)
n = 2 (1.14%)
Glutamic acid (Glu, E)
n = 7 (3.98%)
Asparagine (Asn, N)
n = 7 (3.98%)
Glutamine (Gln, Q)
n = 3 (1.7%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.57%)
Arginine (Arg, R)
n = 1 (0.57%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 0 4 0 1 1 2 10 0 3 12 1 3 6 12 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 1 1 3 0 3 0 10 2 7 6 4 0 0 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 0 0 6 1 2 0 4 2 10 4 5 6 3 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 3 4 2 0 1 0 0 0 1 0 0 0 0 1 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
62 12 43 60
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 24 35 78
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
40 17 36 84
Total protein-coding genes (size: 11394 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 210 (5.53%)
Alanine (Ala, A)
n = 231 (6.09%)
Serine (Ser, S)
n = 328 (8.64%)
Threonine (Thr, T)
n = 301 (7.93%)
Cysteine (Cys, C)
n = 26 (0.69%)
Valine (Val, V)
n = 156 (4.11%)
Leucine (Leu, L)
n = 583 (15.36%)
Isoleucine (Ile, I)
n = 339 (8.93%)
Methionine (Met, M)
n = 267 (7.04%)
Proline (Pro, P)
n = 199 (5.24%)
Phenylalanine (Phe, F)
n = 225 (5.93%)
Tyrosine (Tyr, Y)
n = 143 (3.77%)
Tryptophan (Trp, W)
n = 105 (2.77%)
Aspartic acid (Asp, D)
n = 67 (1.77%)
Glutamic acid (Glu, E)
n = 92 (2.42%)
Asparagine (Asn, N)
n = 159 (4.19%)
Glutamine (Gln, Q)
n = 90 (2.37%)
Histidine (His, H)
n = 101 (2.66%)
Lysine (Lys, K)
n = 101 (2.66%)
Arginine (Arg, R)
n = 66 (1.74%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
110 229 220 39 93 310 43 79 77 13 24 40 74 18 71 154
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
47 10 16 27 107 93 4 28 45 110 27 37 85 71 6 32
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
107 146 16 40 100 117 9 13 49 35 108 15 19 30 129 21
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
80 77 15 14 53 92 9 2 10 51 3 0 0 5 2 90
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
756 941 1229 870
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
469 997 760 1570
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
246 1405 1612 533 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​H​e​t​e​r​o​c​e​p​h​a​l​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ g​l​a​b​e​r​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.