Viewing data for Plectropomus leopardus


Scientific name Plectropomus leopardus
Common name Bluedotted coraltrout
Maximum lifespan 26.00 years (Plectropomus leopardus@AnAge)

Total mtDNA (size: 16714 bases) GC AT G C A T
Base content (bases) 7228 9486 4510 2718 4673 4813
Base content per 1 kb (bases) 432 568 270 163 280 288
Base content (%) 43.2% 56.8%
Total protein-coding genes (size: 11385 bases) GC AT G C A T
Base content (bases) 4973 6412 3263 1710 3360 3052
Base content per 1 kb (bases) 437 563 287 150 295 268
Base content (%) 43.7% 56.3%
D-loop (size: 1065 bases) GC AT G C A T
Base content (bases) 357 708 212 145 312 396
Base content per 1 kb (bases) 335 665 199 136 293 372
Base content (%) 33.5% 66.5%
Total tRNA-coding genes (size: 1559 bases) GC AT G C A T
Base content (bases) 689 870 376 313 394 476
Base content per 1 kb (bases) 442 558 241 201 253 305
Base content (%) 44.2% 55.8%
Total rRNA-coding genes (size: 2642 bases) GC AT G C A T
Base content (bases) 1177 1465 642 535 595 870
Base content per 1 kb (bases) 445 555 243 202 225 329
Base content (%) 44.5% 55.5%
12S rRNA gene (size: 951 bases) GC AT G C A T
Base content (bases) 443 508 239 204 208 300
Base content per 1 kb (bases) 466 534 251 215 219 315
Base content (%) 46.6% 53.4%
16S rRNA gene (size: 1691 bases) GC AT G C A T
Base content (bases) 734 957 403 331 387 570
Base content per 1 kb (bases) 434 566 238 196 229 337
Base content (%) 43.4% 56.6%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 282 402 195 87 232 170
Base content per 1 kb (bases) 412 588 285 127 339 249
Base content (%) 41.2% 58.8%
ATP8 (size: 172 bases) GC AT G C A T
Base content (bases) 72 100 46 26 50 50
Base content per 1 kb (bases) 419 581 267 151 291 291
Base content (%) 41.9% 58.1%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 658 893 386 272 495 398
Base content per 1 kb (bases) 424 576 249 175 319 257
Base content (%) 42.4% 57.6%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 292 399 179 113 196 203
Base content per 1 kb (bases) 423 577 259 164 284 294
Base content (%) 42.3% 57.7%
COX3 (size: 786 bases) GC AT G C A T
Base content (bases) 357 429 216 141 239 190
Base content per 1 kb (bases) 454 546 275 179 304 242
Base content (%) 45.4% 54.6%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 503 638 327 176 346 292
Base content per 1 kb (bases) 441 559 287 154 303 256
Base content (%) 44.1% 55.9%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 456 519 313 143 268 251
Base content per 1 kb (bases) 468 532 321 147 275 257
Base content (%) 46.8% 53.2%
ND2 (size: 1046 bases) GC AT G C A T
Base content (bases) 475 571 351 124 276 295
Base content per 1 kb (bases) 454 546 336 119 264 282
Base content (%) 45.4% 54.6%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 162 187 104 58 117 70
Base content per 1 kb (bases) 464 536 298 166 335 201
Base content (%) 46.4% 53.6%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 609 772 421 188 383 389
Base content per 1 kb (bases) 441 559 305 136 277 282
Base content (%) 44.1% 55.9%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 146 151 99 47 91 60
Base content per 1 kb (bases) 492 508 333 158 306 202
Base content (%) 49.2% 50.8%
ND5 (size: 1821 bases) GC AT G C A T
Base content (bases) 738 1083 483 255 574 509
Base content per 1 kb (bases) 405 595 265 140 315 280
Base content (%) 40.5% 59.5%
ND6 (size: 516 bases) GC AT G C A T
Base content (bases) 232 284 147 85 100 184
Base content per 1 kb (bases) 450 550 285 165 194 357
Base content (%) 45.0% 55.0%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.41%)
Alanine (Ala, A)
n = 21 (9.25%)
Serine (Ser, S)
n = 8 (3.52%)
Threonine (Thr, T)
n = 18 (7.93%)
Cysteine (Cys, C)
n = 1 (0.44%)
Valine (Val, V)
n = 15 (6.61%)
Leucine (Leu, L)
n = 57 (25.11%)
Isoleucine (Ile, I)
n = 17 (7.49%)
Methionine (Met, M)
n = 6 (2.64%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 16 (7.05%)
Tyrosine (Tyr, Y)
n = 5 (2.2%)
Tryptophan (Trp, W)
n = 3 (1.32%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 10 (4.41%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 6 (2.64%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 3 3 17 10 14 1 13 6 2 6 2 6 1 8 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 7 6 8 0 1 3 5 1 6 2 5 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 8 2 1 4 1 0 0 2 4 1 0 2 2 8 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 3 1 1 0 1 0 1 2 3 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
51 76 54 47
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
22 59 36 111
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 60 80 74
ATP8 (size: 172 bases)
Amino acid sequence: MPQLLPTPWFMTLIFAWVVFLGFVPTKVMSHSFSNEPTSVKPQKLEKDFLKLTMGLS
Amino acid frequencies:
Glycine (Gly, G)
n = 2 (3.57%)
Alanine (Ala, A)
n = 1 (1.79%)
Serine (Ser, S)
n = 5 (8.93%)
Threonine (Thr, T)
n = 5 (8.93%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 5 (8.93%)
Leucine (Leu, L)
n = 8 (14.29%)
Isoleucine (Ile, I)
n = 1 (1.79%)
Methionine (Met, M)
n = 4 (7.14%)
Proline (Pro, P)
n = 6 (10.71%)
Phenylalanine (Phe, F)
n = 6 (10.71%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 2 (3.57%)
Aspartic acid (Asp, D)
n = 1 (1.79%)
Glutamic acid (Glu, E)
n = 2 (3.57%)
Asparagine (Asn, N)
n = 1 (1.79%)
Glutamine (Gln, Q)
n = 2 (3.57%)
Histidine (His, H)
n = 1 (1.79%)
Lysine (Lys, K)
n = 5 (8.93%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 0 1 0 1 1 2 3 2 0 1 0 2 2 2 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 1 0 0 0 0 2 0 0 3 2 1 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 1 1 2 1 0 0 0 2 0 0 0 1 0 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 0 0 1 5 0 0 0 0 0 0 0 0 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
11 13 18 15
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 15 12 24
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 18 20 10
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.91%)
Alanine (Ala, A)
n = 46 (8.91%)
Serine (Ser, S)
n = 30 (5.81%)
Threonine (Thr, T)
n = 35 (6.78%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 41 (7.95%)
Leucine (Leu, L)
n = 63 (12.21%)
Isoleucine (Ile, I)
n = 42 (8.14%)
Methionine (Met, M)
n = 22 (4.26%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 14 (2.71%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 16 (3.1%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 10 (1.94%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
27 15 16 20 5 23 2 13 4 3 13 8 14 6 15 27
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 1 15 10 19 2 16 7 14 9 15 5 7 1 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 14 0 9 4 10 2 1 4 9 9 2 0 2 14 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 8 3 7 7 10 0 3 0 4 1 0 0 1 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
158 112 130 117
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 134 96 210
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
37 140 172 168
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 17 (7.42%)
Serine (Ser, S)
n = 15 (6.55%)
Threonine (Thr, T)
n = 10 (4.37%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 20 (8.73%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 21 (9.17%)
Methionine (Met, M)
n = 11 (4.8%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 8 (3.49%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 5 (2.18%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 13 7 8 2 8 0 10 6 2 6 5 7 2 5 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 1 5 5 6 1 2 2 3 2 5 3 6 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 6 1 5 5 2 0 0 3 2 7 0 0 1 4 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 13 2 4 9 4 0 4 0 2 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 56 54 46
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 53 64 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 70 85 61
COX3 (size: 786 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.05%)
Alanine (Ala, A)
n = 22 (8.43%)
Serine (Ser, S)
n = 15 (5.75%)
Threonine (Thr, T)
n = 22 (8.43%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 17 (6.51%)
Leucine (Leu, L)
n = 30 (11.49%)
Isoleucine (Ile, I)
n = 15 (5.75%)
Methionine (Met, M)
n = 8 (3.07%)
Proline (Pro, P)
n = 12 (4.6%)
Phenylalanine (Phe, F)
n = 26 (9.96%)
Tyrosine (Tyr, Y)
n = 11 (4.21%)
Tryptophan (Trp, W)
n = 12 (4.6%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 11 (4.21%)
Asparagine (Asn, N)
n = 2 (0.77%)
Glutamine (Gln, Q)
n = 8 (3.07%)
Histidine (His, H)
n = 15 (5.75%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 5 7 7 7 6 5 4 7 1 6 5 5 1 9 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 2 8 3 9 2 3 8 6 4 5 6 1 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 9 3 8 0 4 0 0 3 5 6 2 1 0 2 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 9 2 0 5 2 0 1 1 3 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 65 52 69
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 68 55 96
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 83 83 74
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 32 (8.44%)
Serine (Ser, S)
n = 23 (6.07%)
Threonine (Thr, T)
n = 23 (6.07%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 21 (5.54%)
Leucine (Leu, L)
n = 65 (17.15%)
Isoleucine (Ile, I)
n = 30 (7.92%)
Methionine (Met, M)
n = 12 (3.17%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 30 (7.92%)
Tyrosine (Tyr, Y)
n = 13 (3.43%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 10 (2.64%)
Glutamic acid (Glu, E)
n = 5 (1.32%)
Asparagine (Asn, N)
n = 18 (4.75%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 9 (2.37%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 15 5 17 14 19 4 11 6 0 6 7 7 1 14 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 2 1 4 12 14 2 4 6 13 3 7 5 7 2 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 10 2 4 6 11 1 0 1 3 10 4 0 8 10 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 4 1 3 7 7 2 0 3 4 2 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
94 102 93 91
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
51 98 73 158
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
31 127 126 96
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (5.86%)
Alanine (Ala, A)
n = 34 (10.49%)
Serine (Ser, S)
n = 21 (6.48%)
Threonine (Thr, T)
n = 23 (7.1%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 15 (4.63%)
Leucine (Leu, L)
n = 63 (19.44%)
Isoleucine (Ile, I)
n = 23 (7.1%)
Methionine (Met, M)
n = 11 (3.4%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 19 (5.86%)
Tyrosine (Tyr, Y)
n = 13 (4.01%)
Tryptophan (Trp, W)
n = 7 (2.16%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 10 (3.09%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 15 8 13 15 23 4 7 6 1 5 3 6 1 11 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 5 18 9 2 2 8 6 3 6 10 7 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 9 1 2 6 9 1 0 3 4 9 1 1 5 5 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 9 2 1 3 7 0 1 2 4 1 0 0 1 0 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
83 98 77 67
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 99 57 131
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 116 117 70
ND2 (size: 1046 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.19%)
Alanine (Ala, A)
n = 33 (9.51%)
Serine (Ser, S)
n = 25 (7.2%)
Threonine (Thr, T)
n = 47 (13.54%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 6 (1.73%)
Leucine (Leu, L)
n = 81 (23.34%)
Isoleucine (Ile, I)
n = 21 (6.05%)
Methionine (Met, M)
n = 16 (4.61%)
Proline (Pro, P)
n = 20 (5.76%)
Phenylalanine (Phe, F)
n = 11 (3.17%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 9 (2.59%)
Glutamine (Gln, Q)
n = 16 (4.61%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 12 11 24 20 21 6 7 15 1 4 0 2 0 4 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 0 4 17 10 2 4 6 8 0 3 9 7 1 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 18 2 6 6 8 0 1 4 3 4 0 3 4 5 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 4 1 1 1 8 1 0 2 2 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 118 107 59
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 120 55 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 113 132 81
ND3 (size: 1046 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.19%)
Alanine (Ala, A)
n = 33 (9.51%)
Serine (Ser, S)
n = 25 (7.2%)
Threonine (Thr, T)
n = 47 (13.54%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 6 (1.73%)
Leucine (Leu, L)
n = 81 (23.34%)
Isoleucine (Ile, I)
n = 21 (6.05%)
Methionine (Met, M)
n = 16 (4.61%)
Proline (Pro, P)
n = 20 (5.76%)
Phenylalanine (Phe, F)
n = 11 (3.17%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 9 (2.59%)
Glutamine (Gln, Q)
n = 16 (4.61%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 12 11 24 20 21 6 7 15 1 4 0 2 0 4 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 0 4 17 10 2 4 6 8 0 3 9 7 1 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 18 2 6 6 8 0 1 4 3 4 0 3 4 5 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 4 1 1 1 8 1 0 2 2 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 118 107 59
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 120 55 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 113 132 81
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (5.66%)
Alanine (Ala, A)
n = 36 (7.84%)
Serine (Ser, S)
n = 32 (6.97%)
Threonine (Thr, T)
n = 40 (8.71%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 20 (4.36%)
Leucine (Leu, L)
n = 97 (21.13%)
Isoleucine (Ile, I)
n = 36 (7.84%)
Methionine (Met, M)
n = 24 (5.23%)
Proline (Pro, P)
n = 28 (6.1%)
Phenylalanine (Phe, F)
n = 13 (2.83%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 19 (4.14%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 11 (2.4%)
Asparagine (Asn, N)
n = 12 (2.61%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 12 (2.61%)
Lysine (Lys, K)
n = 9 (1.96%)
Arginine (Arg, R)
n = 12 (2.61%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 13 18 27 20 32 5 12 9 1 4 4 12 0 7 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 3 2 4 18 14 0 4 9 12 1 4 12 12 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 14 2 6 7 11 0 1 7 9 5 2 1 1 11 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 10 1 0 4 9 0 1 3 6 2 0 0 0 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
97 146 129 88
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
70 128 72 190
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 147 188 104
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 14 (14.29%)
Serine (Ser, S)
n = 12 (12.24%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 24 (24.49%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 4 (4.08%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 7 (7.14%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 2 (2.04%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 0 (0%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 2 6 8 7 0 3 3 0 1 0 0 1 5 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 3 4 5 4 1 1 1 2 1 0 1 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 1 0 3 1 3 1 2 2 0 0 0 0 0 0 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 0 1 1 0 0 0 3 0 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
25 33 18 23
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
16 32 12 39
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 34 30 29
ND5 (size: 1821 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 31 (5.12%)
Alanine (Ala, A)
n = 56 (9.24%)
Serine (Ser, S)
n = 46 (7.59%)
Threonine (Thr, T)
n = 54 (8.91%)
Cysteine (Cys, C)
n = 6 (0.99%)
Valine (Val, V)
n = 25 (4.13%)
Leucine (Leu, L)
n = 94 (15.51%)
Isoleucine (Ile, I)
n = 54 (8.91%)
Methionine (Met, M)
n = 29 (4.79%)
Proline (Pro, P)
n = 30 (4.95%)
Phenylalanine (Phe, F)
n = 43 (7.1%)
Tyrosine (Tyr, Y)
n = 12 (1.98%)
Tryptophan (Trp, W)
n = 14 (2.31%)
Aspartic acid (Asp, D)
n = 14 (2.31%)
Glutamic acid (Glu, E)
n = 10 (1.65%)
Asparagine (Asn, N)
n = 26 (4.29%)
Glutamine (Gln, Q)
n = 16 (2.64%)
Histidine (His, H)
n = 15 (2.48%)
Lysine (Lys, K)
n = 21 (3.47%)
Arginine (Arg, R)
n = 10 (1.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
35 19 22 26 14 21 8 22 16 0 8 7 6 4 24 19
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 2 4 18 19 17 2 11 4 11 5 18 6 4 2 18
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 19 2 9 7 13 2 4 11 2 10 3 3 11 15 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 10 0 4 10 17 4 1 3 5 1 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
136 140 199 132
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 171 115 245
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
43 172 195 197
ND6 (size: 516 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (11.11%)
Alanine (Ala, A)
n = 22 (12.87%)
Serine (Ser, S)
n = 14 (8.19%)
Threonine (Thr, T)
n = 10 (5.85%)
Cysteine (Cys, C)
n = 4 (2.34%)
Valine (Val, V)
n = 17 (9.94%)
Leucine (Leu, L)
n = 27 (15.79%)
Isoleucine (Ile, I)
n = 5 (2.92%)
Methionine (Met, M)
n = 8 (4.68%)
Proline (Pro, P)
n = 5 (2.92%)
Phenylalanine (Phe, F)
n = 12 (7.02%)
Tyrosine (Tyr, Y)
n = 9 (5.26%)
Tryptophan (Trp, W)
n = 4 (2.34%)
Aspartic acid (Asp, D)
n = 1 (0.58%)
Glutamic acid (Glu, E)
n = 5 (2.92%)
Asparagine (Asn, N)
n = 3 (1.75%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 2 (1.17%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 4 (2.34%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 2 4 3 0 4 1 9 0 0 7 1 3 6 9 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 3 1 9 0 8 5 5 1 4 9 1 0 4 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 2 2 2 1 4 1 3 3 4 5 1 10 2 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 3 0 1 0 0 1 0 0 3 0 0 0 1 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 19 32 57
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 45 21 69
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
46 21 47 58
Total protein-coding genes (size: 11410 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 239 (6.29%)
Alanine (Ala, A)
n = 342 (9.0%)
Serine (Ser, S)
n = 252 (6.63%)
Threonine (Thr, T)
n = 301 (7.92%)
Cysteine (Cys, C)
n = 29 (0.76%)
Valine (Val, V)
n = 209 (5.5%)
Leucine (Leu, L)
n = 668 (17.58%)
Isoleucine (Ile, I)
n = 275 (7.24%)
Methionine (Met, M)
n = 157 (4.13%)
Proline (Pro, P)
n = 212 (5.58%)
Phenylalanine (Phe, F)
n = 241 (6.34%)
Tyrosine (Tyr, Y)
n = 114 (3.0%)
Tryptophan (Trp, W)
n = 112 (2.95%)
Aspartic acid (Asp, D)
n = 75 (1.97%)
Glutamic acid (Glu, E)
n = 98 (2.58%)
Asparagine (Asn, N)
n = 114 (3.0%)
Glutamine (Gln, Q)
n = 94 (2.47%)
Histidine (His, H)
n = 107 (2.82%)
Lysine (Lys, K)
n = 78 (2.05%)
Arginine (Arg, R)
n = 77 (2.03%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
162 113 105 178 120 187 41 118 82 12 67 45 72 25 117 124
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
52 11 18 85 119 118 20 54 60 86 39 78 63 62 9 72
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
98 113 18 57 53 77 8 12 45 47 67 15 24 36 78 42
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
65 79 19 24 51 71 7 13 20 34 10 0 0 6 1 97
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
963 1016 982 840
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
514 1050 687 1550
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
300 1139 1307 1055 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​l​e​c​t​r​o​p​o​m​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ l​e​o​p​a​r​d​u​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.