Viewing data for Lepisosteus oculatus


Scientific name Lepisosteus oculatus
Common name Spotted gar
Maximum lifespan 18.00 years (Lepisosteus oculatus@AnAge)

Total mtDNA (size: 16330 bases) GC AT G C A T
Base content (bases) 6925 9403 4435 2490 4345 5058
Base content per 1 kb (bases) 424 576 272 152 266 310
Base content (%) 42.4% 57.6%
Total protein-coding genes (size: 11474 bases) GC AT G C A T
Base content (bases) 4827 6647 3288 1539 3178 3469
Base content per 1 kb (bases) 421 579 287 134 277 302
Base content (%) 42.1% 57.9%
D-loop (size: 581 bases) GC AT G C A T
Base content (bases) 209 372 102 107 200 172
Base content per 1 kb (bases) 360 640 176 184 344 296
Base content (%) 36.0% 64.0%
Total tRNA-coding genes (size: 1562 bases) GC AT G C A T
Base content (bases) 686 876 381 305 389 487
Base content per 1 kb (bases) 439 561 244 195 249 312
Base content (%) 43.9% 56.1%
Total rRNA-coding genes (size: 2646 bases) GC AT G C A T
Base content (bases) 1171 1473 647 524 566 907
Base content per 1 kb (bases) 443 557 245 198 214 343
Base content (%) 44.3% 55.7%
12S rRNA gene (size: 959 bases) GC AT G C A T
Base content (bases) 454 505 249 205 195 310
Base content per 1 kb (bases) 473 527 260 214 203 323
Base content (%) 47.3% 52.7%
16S rRNA gene (size: 1687 bases) GC AT G C A T
Base content (bases) 717 968 398 319 371 597
Base content per 1 kb (bases) 425 574 236 189 220 354
Base content (%) 42.5% 57.4%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 292 392 210 82 202 190
Base content per 1 kb (bases) 427 573 307 120 295 278
Base content (%) 42.7% 57.3%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 74 94 60 14 42 52
Base content per 1 kb (bases) 440 560 357 83 250 310
Base content (%) 44.0% 56.0%
COX1 (size: 1557 bases) GC AT G C A T
Base content (bases) 673 884 404 269 463 421
Base content per 1 kb (bases) 432 568 259 173 297 270
Base content (%) 43.2% 56.8%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 290 401 184 106 189 212
Base content per 1 kb (bases) 420 580 266 153 274 307
Base content (%) 42.0% 58.0%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 357 428 233 124 212 216
Base content per 1 kb (bases) 455 545 297 158 270 275
Base content (%) 45.5% 54.5%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 474 667 319 155 340 327
Base content per 1 kb (bases) 415 585 280 136 298 287
Base content (%) 41.5% 58.5%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 404 571 276 128 280 291
Base content per 1 kb (bases) 414 586 283 131 287 298
Base content (%) 41.4% 58.6%
ND2 (size: 1045 bases) GC AT G C A T
Base content (bases) 402 643 299 103 272 371
Base content per 1 kb (bases) 385 615 286 99 260 355
Base content (%) 38.5% 61.5%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 153 196 106 47 104 92
Base content per 1 kb (bases) 438 562 304 135 298 264
Base content (%) 43.8% 56.2%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 586 795 398 188 384 411
Base content per 1 kb (bases) 424 576 288 136 278 298
Base content (%) 42.4% 57.6%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 129 168 86 43 86 82
Base content per 1 kb (bases) 434 566 290 145 290 276
Base content (%) 43.4% 56.6%
ND5 (size: 1905 bases) GC AT G C A T
Base content (bases) 773 1132 546 227 531 601
Base content per 1 kb (bases) 406 594 287 119 279 315
Base content (%) 40.6% 59.4%
ND6 (size: 519 bases) GC AT G C A T
Base content (bases) 228 291 173 55 78 213
Base content per 1 kb (bases) 439 561 333 106 150 410
Base content (%) 43.9% 56.1%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 17 (7.49%)
Serine (Ser, S)
n = 6 (2.64%)
Threonine (Thr, T)
n = 25 (11.01%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 12 (5.29%)
Leucine (Leu, L)
n = 57 (25.11%)
Isoleucine (Ile, I)
n = 19 (8.37%)
Methionine (Met, M)
n = 9 (3.96%)
Proline (Pro, P)
n = 16 (7.05%)
Phenylalanine (Phe, F)
n = 9 (3.96%)
Tyrosine (Tyr, Y)
n = 6 (2.64%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 10 (4.41%)
Glutamine (Gln, Q)
n = 10 (4.41%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 5 7 14 12 19 4 8 8 2 6 2 4 0 8 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 4 9 4 0 1 1 7 2 0 8 7 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 7 1 3 0 0 0 1 2 1 5 0 0 3 7 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 4 0 0 1 1 0 1 0 5 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
45 84 67 32
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 61 36 106
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 65 87 64
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPTPWFFILFLSWLTFLIILPSKIMEHSFTMEPTTQSVEKPNPEPLNWPWP*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 4 (7.27%)
Threonine (Thr, T)
n = 5 (9.09%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.82%)
Leucine (Leu, L)
n = 7 (12.73%)
Isoleucine (Ile, I)
n = 4 (7.27%)
Methionine (Met, M)
n = 3 (5.45%)
Proline (Pro, P)
n = 10 (18.18%)
Phenylalanine (Phe, F)
n = 5 (9.09%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 4 (7.27%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 4 (7.27%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 1 (1.82%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 1 1 0 3 3 0 1 2 0 0 0 1 0 2 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 0 0 0 0 0 0 0 2 6 2 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 1 1 1 2 0 0 0 1 0 0 0 0 0 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 3 1 0 0 2 0 0 0 0 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
5 19 18 14
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
5 18 13 20
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 23 21 8
COX1 (size: 1557 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 45 (8.69%)
Alanine (Ala, A)
n = 47 (9.07%)
Serine (Ser, S)
n = 31 (5.98%)
Threonine (Thr, T)
n = 38 (7.34%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 41 (7.92%)
Leucine (Leu, L)
n = 62 (11.97%)
Isoleucine (Ile, I)
n = 38 (7.34%)
Methionine (Met, M)
n = 26 (5.02%)
Proline (Pro, P)
n = 28 (5.41%)
Phenylalanine (Phe, F)
n = 41 (7.92%)
Tyrosine (Tyr, Y)
n = 19 (3.67%)
Tryptophan (Trp, W)
n = 17 (3.28%)
Aspartic acid (Asp, D)
n = 15 (2.9%)
Glutamic acid (Glu, E)
n = 11 (2.12%)
Asparagine (Asn, N)
n = 15 (2.9%)
Glutamine (Gln, Q)
n = 8 (1.54%)
Histidine (His, H)
n = 19 (3.67%)
Lysine (Lys, K)
n = 8 (1.54%)
Arginine (Arg, R)
n = 8 (1.54%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
26 12 19 13 12 14 6 16 7 1 11 11 16 3 26 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 1 0 6 25 16 0 3 8 25 9 6 9 12 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 19 1 5 10 10 1 1 4 12 7 0 1 6 9 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 10 1 5 10 6 2 1 0 7 0 1 0 0 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
159 108 131 121
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 139 95 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
33 157 195 134
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.49%)
Alanine (Ala, A)
n = 15 (6.55%)
Serine (Ser, S)
n = 19 (8.3%)
Threonine (Thr, T)
n = 10 (4.37%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 17 (7.42%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 19 (8.3%)
Methionine (Met, M)
n = 15 (6.55%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 8 (3.49%)
Tyrosine (Tyr, Y)
n = 8 (3.49%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 12 (5.24%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 6 (2.62%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 11 (4.8%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 7 8 7 2 10 3 6 8 0 5 5 7 0 5 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 1 1 3 5 7 0 0 2 6 0 2 6 6 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 3 0 5 5 5 1 1 2 4 4 1 0 2 4 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 13 2 3 9 3 1 0 1 5 0 0 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 61 57 45
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
24 55 64 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 68 91 56
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.46%)
Alanine (Ala, A)
n = 20 (7.69%)
Serine (Ser, S)
n = 14 (5.38%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 32 (12.31%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 11 (4.23%)
Proline (Pro, P)
n = 15 (5.77%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 9 (3.46%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 15 (5.77%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 3 10 7 6 12 2 5 8 1 3 9 4 0 9 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 2 2 10 7 1 1 7 12 2 0 6 9 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 12 0 5 3 2 1 0 3 8 4 0 0 0 1 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 9 0 1 4 2 0 0 0 5 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 71 53 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 68 53 96
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 94 109 50
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 25 (6.6%)
Serine (Ser, S)
n = 22 (5.8%)
Threonine (Thr, T)
n = 29 (7.65%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 21 (5.54%)
Leucine (Leu, L)
n = 63 (16.62%)
Isoleucine (Ile, I)
n = 31 (8.18%)
Methionine (Met, M)
n = 9 (2.37%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 30 (7.92%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 20 (5.28%)
Glutamine (Gln, Q)
n = 7 (1.85%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 10 7 12 9 23 3 14 7 0 5 5 10 1 10 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 1 6 8 10 1 3 5 16 2 4 4 13 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 9 0 3 9 8 1 0 1 4 10 0 2 7 13 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 4 2 4 7 9 0 0 1 6 1 0 0 0 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
89 95 99 97
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
51 96 79 154
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 128 149 88
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 28 (8.64%)
Serine (Ser, S)
n = 21 (6.48%)
Threonine (Thr, T)
n = 23 (7.1%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (4.32%)
Leucine (Leu, L)
n = 63 (19.44%)
Isoleucine (Ile, I)
n = 27 (8.33%)
Methionine (Met, M)
n = 12 (3.7%)
Proline (Pro, P)
n = 23 (7.1%)
Phenylalanine (Phe, F)
n = 20 (6.17%)
Tyrosine (Tyr, Y)
n = 13 (4.01%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 12 (3.7%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 5 (1.54%)
Lysine (Lys, K)
n = 8 (2.47%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 10 10 10 17 24 2 8 6 0 2 1 9 2 13 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 4 9 12 3 0 7 10 1 6 3 13 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 10 0 3 3 12 0 3 0 8 5 2 2 3 9 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 10 1 1 3 8 0 0 1 7 0 0 0 1 0 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 95 85 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 92 60 136
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 89 146 74
ND2 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.61%)
Alanine (Ala, A)
n = 28 (8.07%)
Serine (Ser, S)
n = 25 (7.2%)
Threonine (Thr, T)
n = 47 (13.54%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 6 (1.73%)
Leucine (Leu, L)
n = 59 (17.0%)
Isoleucine (Ile, I)
n = 32 (9.22%)
Methionine (Met, M)
n = 28 (8.07%)
Proline (Pro, P)
n = 19 (5.48%)
Phenylalanine (Phe, F)
n = 13 (3.75%)
Tyrosine (Tyr, Y)
n = 9 (2.59%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 13 (3.75%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 11 (3.17%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 9 25 8 7 31 2 9 13 1 1 1 4 0 9 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 6 14 8 0 2 3 10 1 1 5 13 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 23 0 0 10 9 1 1 4 3 6 0 2 7 6 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 5 0 0 1 11 0 0 0 4 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
56 91 136 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 114 59 138
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 94 176 68
ND3 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.61%)
Alanine (Ala, A)
n = 28 (8.07%)
Serine (Ser, S)
n = 25 (7.2%)
Threonine (Thr, T)
n = 47 (13.54%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 6 (1.73%)
Leucine (Leu, L)
n = 59 (17.0%)
Isoleucine (Ile, I)
n = 32 (9.22%)
Methionine (Met, M)
n = 28 (8.07%)
Proline (Pro, P)
n = 19 (5.48%)
Phenylalanine (Phe, F)
n = 13 (3.75%)
Tyrosine (Tyr, Y)
n = 9 (2.59%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 13 (3.75%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 11 (3.17%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 9 25 8 7 31 2 9 13 1 1 1 4 0 9 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 6 14 8 0 2 3 10 1 1 5 13 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 23 0 0 10 9 1 1 4 3 6 0 2 7 6 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 5 0 0 1 11 0 0 0 4 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
56 91 136 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 114 59 138
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 94 176 68
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (5.23%)
Alanine (Ala, A)
n = 37 (8.06%)
Serine (Ser, S)
n = 29 (6.32%)
Threonine (Thr, T)
n = 41 (8.93%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 17 (3.7%)
Leucine (Leu, L)
n = 90 (19.61%)
Isoleucine (Ile, I)
n = 43 (9.37%)
Methionine (Met, M)
n = 24 (5.23%)
Proline (Pro, P)
n = 31 (6.75%)
Phenylalanine (Phe, F)
n = 14 (3.05%)
Tyrosine (Tyr, Y)
n = 16 (3.49%)
Tryptophan (Trp, W)
n = 20 (4.36%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 13 (2.83%)
Asparagine (Asn, N)
n = 12 (2.61%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 8 (1.74%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
28 15 21 17 10 37 7 17 9 2 3 5 9 0 8 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 4 8 15 12 2 4 6 8 6 4 13 14 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
21 15 1 5 10 5 1 3 5 10 6 1 2 2 10 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 12 1 0 4 11 0 1 2 8 0 0 0 0 0 19
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
95 132 139 94
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
67 130 75 188
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
26 136 197 101
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 13 (13.27%)
Serine (Ser, S)
n = 11 (11.22%)
Threonine (Thr, T)
n = 7 (7.14%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 6 (6.12%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 5 (5.1%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 4 3 5 11 1 3 3 0 1 0 2 0 5 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 4 3 6 0 0 1 4 0 0 1 1 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 3 0 1 3 3 0 2 2 0 1 0 0 0 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 2 1 0 0 0 0 0 0 2 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
24 32 21 22
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
15 29 15 40
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 25 46 24
ND5 (size: 1905 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (4.1%)
Alanine (Ala, A)
n = 52 (8.2%)
Serine (Ser, S)
n = 45 (7.1%)
Threonine (Thr, T)
n = 66 (10.41%)
Cysteine (Cys, C)
n = 8 (1.26%)
Valine (Val, V)
n = 22 (3.47%)
Leucine (Leu, L)
n = 102 (16.09%)
Isoleucine (Ile, I)
n = 51 (8.04%)
Methionine (Met, M)
n = 33 (5.21%)
Proline (Pro, P)
n = 35 (5.52%)
Phenylalanine (Phe, F)
n = 43 (6.78%)
Tyrosine (Tyr, Y)
n = 13 (2.05%)
Tryptophan (Trp, W)
n = 15 (2.37%)
Aspartic acid (Asp, D)
n = 16 (2.52%)
Glutamic acid (Glu, E)
n = 10 (1.58%)
Asparagine (Asn, N)
n = 27 (4.26%)
Glutamine (Gln, Q)
n = 20 (3.15%)
Histidine (His, H)
n = 13 (2.05%)
Lysine (Lys, K)
n = 25 (3.94%)
Arginine (Arg, R)
n = 12 (1.89%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
26 25 31 15 20 39 3 20 19 1 8 2 11 1 17 26
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 4 4 11 25 13 3 6 4 15 1 6 12 15 2 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
28 27 2 4 8 19 1 4 9 6 7 2 5 9 18 9
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 10 0 6 10 22 3 3 2 6 1 0 0 1 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
126 157 215 137
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
74 185 125 251
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 204 261 143
ND6 (size: 519 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.53%)
Alanine (Ala, A)
n = 17 (9.88%)
Serine (Ser, S)
n = 7 (4.07%)
Threonine (Thr, T)
n = 2 (1.16%)
Cysteine (Cys, C)
n = 3 (1.74%)
Valine (Val, V)
n = 25 (14.53%)
Leucine (Leu, L)
n = 29 (16.86%)
Isoleucine (Ile, I)
n = 9 (5.23%)
Methionine (Met, M)
n = 7 (4.07%)
Proline (Pro, P)
n = 4 (2.33%)
Phenylalanine (Phe, F)
n = 14 (8.14%)
Tyrosine (Tyr, Y)
n = 8 (4.65%)
Tryptophan (Trp, W)
n = 6 (3.49%)
Aspartic acid (Asp, D)
n = 3 (1.74%)
Glutamic acid (Glu, E)
n = 7 (4.07%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 4 (2.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 1 2 5 0 1 1 11 0 0 8 2 8 7 13 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 2 1 6 3 4 4 11 0 1 13 3 0 0 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 1 2 1 2 0 2 0 6 2 3 11 1 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 3 4 2 1 0 1 1 0 0 3 0 1 0 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
77 15 23 58
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 28 20 84
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
55 12 35 71
Total protein-coding genes (size: 11497 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 231 (6.03%)
Alanine (Ala, A)
n = 307 (8.02%)
Serine (Ser, S)
n = 241 (6.29%)
Threonine (Thr, T)
n = 323 (8.44%)
Cysteine (Cys, C)
n = 29 (0.76%)
Valine (Val, V)
n = 198 (5.17%)
Leucine (Leu, L)
n = 642 (16.77%)
Isoleucine (Ile, I)
n = 301 (7.86%)
Methionine (Met, M)
n = 188 (4.91%)
Proline (Pro, P)
n = 226 (5.9%)
Phenylalanine (Phe, F)
n = 233 (6.09%)
Tyrosine (Tyr, Y)
n = 121 (3.16%)
Tryptophan (Trp, W)
n = 122 (3.19%)
Aspartic acid (Asp, D)
n = 76 (1.98%)
Glutamic acid (Glu, E)
n = 104 (2.72%)
Asparagine (Asn, N)
n = 123 (3.21%)
Glutamine (Gln, Q)
n = 101 (2.64%)
Histidine (His, H)
n = 98 (2.56%)
Lysine (Lys, K)
n = 83 (2.17%)
Arginine (Arg, R)
n = 76 (1.98%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
198 103 149 115 110 236 35 120 93 8 54 43 87 14 129 104
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
39 12 17 61 130 102 14 31 47 115 38 34 76 109 7 50
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
134 132 7 38 67 77 7 19 33 64 57 9 26 40 83 31
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
67 91 13 22 54 75 8 7 9 55 5 1 1 5 0 113
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
916 997 1072 845
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
512 1045 711 1562
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
231 1134 1560 905 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​L​e​p​i​s​o​s​t​e​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ o​c​u​l​a​t​u​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.