Viewing data for Crocodylus novaeguineae


Scientific name Crocodylus novaeguineae
Common name New Guinea crocodile
Maximum lifespan 24.60 years (Crocodylus novaeguineae@AnAge)

Total mtDNA (size: 16894 bases) GC AT G C A T
Base content (bases) 7314 9580 4820 2494 4135 5445
Base content per 1 kb (bases) 433 567 285 148 245 322
Base content (%) 43.3% 56.7%
Total protein-coding genes (size: 11388 bases) GC AT G C A T
Base content (bases) 5027 6361 3488 1539 2851 3510
Base content per 1 kb (bases) 441 559 306 135 250 308
Base content (%) 44.1% 55.9%
D-loop (size: 1183 bases) GC AT G C A T
Base content (bases) 360 823 221 139 351 472
Base content per 1 kb (bases) 304 696 187 117 297 399
Base content (%) 30.4% 69.6%
Total tRNA-coding genes (size: 1545 bases) GC AT G C A T
Base content (bases) 668 877 388 280 390 487
Base content per 1 kb (bases) 432 568 251 181 252 315
Base content (%) 43.2% 56.8%
Total rRNA-coding genes (size: 2578 bases) GC AT G C A T
Base content (bases) 1166 1412 654 512 516 896
Base content per 1 kb (bases) 452 548 254 199 200 348
Base content (%) 45.2% 54.8%
12S rRNA gene (size: 983 bases) GC AT G C A T
Base content (bases) 472 511 260 212 192 319
Base content per 1 kb (bases) 480 520 264 216 195 325
Base content (%) 48.0% 52.0%
16S rRNA gene (size: 1595 bases) GC AT G C A T
Base content (bases) 694 901 394 300 324 577
Base content per 1 kb (bases) 435 565 247 188 203 362
Base content (%) 43.5% 56.5%

ATP6 (size: 696 bases) GC AT G C A T
Base content (bases) 298 398 213 85 173 225
Base content per 1 kb (bases) 428 572 306 122 249 323
Base content (%) 42.8% 57.2%
ATP8 (size: 162 bases) GC AT G C A T
Base content (bases) 60 102 48 12 35 67
Base content per 1 kb (bases) 370 630 296 74 216 414
Base content (%) 37.0% 63.0%
COX1 (size: 1557 bases) GC AT G C A T
Base content (bases) 679 878 426 253 420 458
Base content per 1 kb (bases) 436 564 274 162 270 294
Base content (%) 43.6% 56.4%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 281 403 187 94 172 231
Base content per 1 kb (bases) 411 589 273 137 251 338
Base content (%) 41.1% 58.9%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 355 429 234 121 204 225
Base content per 1 kb (bases) 453 547 298 154 260 287
Base content (%) 45.3% 54.7%
CYTB (size: 1165 bases) GC AT G C A T
Base content (bases) 531 634 371 160 294 340
Base content per 1 kb (bases) 456 544 318 137 252 292
Base content (%) 45.6% 54.4%
ND1 (size: 963 bases) GC AT G C A T
Base content (bases) 453 510 293 160 257 253
Base content per 1 kb (bases) 470 530 304 166 267 263
Base content (%) 47.0% 53.0%
ND2 (size: 1056 bases) GC AT G C A T
Base content (bases) 465 591 346 119 263 328
Base content per 1 kb (bases) 440 560 328 113 249 311
Base content (%) 44.0% 56.0%
ND3 (size: 348 bases) GC AT G C A T
Base content (bases) 157 191 101 56 86 105
Base content per 1 kb (bases) 451 549 290 161 247 302
Base content (%) 45.1% 54.9%
ND4 (size: 1374 bases) GC AT G C A T
Base content (bases) 600 774 424 176 345 429
Base content per 1 kb (bases) 437 563 309 128 251 312
Base content (%) 43.7% 56.3%
ND4L (size: 294 bases) GC AT G C A T
Base content (bases) 139 155 103 36 80 75
Base content per 1 kb (bases) 473 527 350 122 272 255
Base content (%) 47.3% 52.7%
ND5 (size: 1860 bases) GC AT G C A T
Base content (bases) 811 1049 583 228 454 595
Base content per 1 kb (bases) 436 564 313 123 244 320
Base content (%) 43.6% 56.4%
ND6 (size: 525 bases) GC AT G C A T
Base content (bases) 233 292 182 51 82 210
Base content per 1 kb (bases) 444 556 347 97 156 400
Base content (%) 44.4% 55.6%

ATP6 (size: 696 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (3.03%)
Alanine (Ala, A)
n = 16 (6.93%)
Serine (Ser, S)
n = 13 (5.63%)
Threonine (Thr, T)
n = 31 (13.42%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (4.33%)
Leucine (Leu, L)
n = 61 (26.41%)
Isoleucine (Ile, I)
n = 15 (6.49%)
Methionine (Met, M)
n = 13 (5.63%)
Proline (Pro, P)
n = 15 (6.49%)
Phenylalanine (Phe, F)
n = 4 (1.73%)
Tyrosine (Tyr, Y)
n = 4 (1.73%)
Tryptophan (Trp, W)
n = 4 (1.73%)
Aspartic acid (Asp, D)
n = 2 (0.87%)
Glutamic acid (Glu, E)
n = 4 (1.73%)
Asparagine (Asn, N)
n = 11 (4.76%)
Glutamine (Gln, Q)
n = 7 (3.03%)
Histidine (His, H)
n = 4 (1.73%)
Lysine (Lys, K)
n = 6 (2.6%)
Arginine (Arg, R)
n = 4 (1.73%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 12 6 7 7 22 10 13 5 2 1 1 4 4 2 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 0 0 8 8 0 0 3 2 2 2 1 12 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 15 0 3 3 5 0 0 2 2 2 1 2 3 8 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 3 1 0 2 6 0 0 1 3 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
39 76 78 39
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
17 73 39 103
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 64 108 31
ATP8 (size: 162 bases)
Amino acid sequence: MPQLNPEPWLMISSITWLVFIITLQPKIASLKFMNTPSNPNQKTTKTWPWPQI*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.89%)
Serine (Ser, S)
n = 4 (7.55%)
Threonine (Thr, T)
n = 6 (11.32%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.89%)
Leucine (Leu, L)
n = 5 (9.43%)
Isoleucine (Ile, I)
n = 6 (11.32%)
Methionine (Met, M)
n = 3 (5.66%)
Proline (Pro, P)
n = 8 (15.09%)
Phenylalanine (Phe, F)
n = 2 (3.77%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 4 (7.55%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 1 (1.89%)
Asparagine (Asn, N)
n = 4 (7.55%)
Glutamine (Gln, Q)
n = 4 (7.55%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 4 (7.55%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 4 2 0 0 4 0 1 3 1 0 0 1 0 0 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 1 0 0 0 0 0 0 0 1 0 6 1 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 2 0 2 0 1 0 0 1 0 0 0 0 1 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 0 0 0 3 1 0 0 0 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
3 16 24 11
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
5 18 14 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 14 29 7
COX1 (size: 1557 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 43 (8.3%)
Alanine (Ala, A)
n = 36 (6.95%)
Serine (Ser, S)
n = 34 (6.56%)
Threonine (Thr, T)
n = 39 (7.53%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 39 (7.53%)
Leucine (Leu, L)
n = 55 (10.62%)
Isoleucine (Ile, I)
n = 41 (7.92%)
Methionine (Met, M)
n = 31 (5.98%)
Proline (Pro, P)
n = 31 (5.98%)
Phenylalanine (Phe, F)
n = 46 (8.88%)
Tyrosine (Tyr, Y)
n = 17 (3.28%)
Tryptophan (Trp, W)
n = 17 (3.28%)
Aspartic acid (Asp, D)
n = 14 (2.7%)
Glutamic acid (Glu, E)
n = 9 (1.74%)
Asparagine (Asn, N)
n = 18 (3.47%)
Glutamine (Gln, Q)
n = 12 (2.32%)
Histidine (His, H)
n = 17 (3.28%)
Lysine (Lys, K)
n = 10 (1.93%)
Arginine (Arg, R)
n = 8 (1.54%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 21 24 8 9 24 8 5 9 3 11 5 18 5 21 25
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 1 7 15 14 0 3 10 26 4 2 9 19 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 18 2 2 6 18 1 0 7 5 12 1 1 5 13 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 7 2 1 13 10 0 1 1 5 1 0 0 1 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
141 117 146 115
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 133 98 212
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
36 176 214 93
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 10 (4.41%)
Serine (Ser, S)
n = 17 (7.49%)
Threonine (Thr, T)
n = 21 (9.25%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 31 (13.66%)
Isoleucine (Ile, I)
n = 16 (7.05%)
Methionine (Met, M)
n = 14 (6.17%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 9 (3.96%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 10 (4.41%)
Glutamic acid (Glu, E)
n = 11 (4.85%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 10 (4.41%)
Histidine (His, H)
n = 10 (4.41%)
Lysine (Lys, K)
n = 3 (1.32%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 10 12 1 4 14 4 8 8 2 4 4 3 2 6 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 1 2 2 6 0 1 1 4 2 2 2 9 1 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 12 2 3 4 5 0 1 4 5 4 1 0 4 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 11 0 3 7 3 0 0 3 2 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
52 62 67 47
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 57 62 83
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 68 102 42
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 19 (7.31%)
Serine (Ser, S)
n = 16 (6.15%)
Threonine (Thr, T)
n = 24 (9.23%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 14 (5.38%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 17 (6.54%)
Methionine (Met, M)
n = 13 (5.0%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 22 (8.46%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 6 (2.31%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 1 (0.38%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 8 12 4 2 19 4 4 6 0 6 5 3 0 4 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 1 3 12 3 1 1 5 9 4 1 1 10 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 10 0 0 3 7 0 0 6 4 7 1 1 0 5 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 7 1 1 3 1 0 0 0 5 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 69 66 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 65 52 100
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 100 107 41
CYTB (size: 1165 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (6.46%)
Alanine (Ala, A)
n = 27 (6.98%)
Serine (Ser, S)
n = 27 (6.98%)
Threonine (Thr, T)
n = 26 (6.72%)
Cysteine (Cys, C)
n = 1 (0.26%)
Valine (Val, V)
n = 15 (3.88%)
Leucine (Leu, L)
n = 72 (18.6%)
Isoleucine (Ile, I)
n = 28 (7.24%)
Methionine (Met, M)
n = 16 (4.13%)
Proline (Pro, P)
n = 25 (6.46%)
Phenylalanine (Phe, F)
n = 26 (6.72%)
Tyrosine (Tyr, Y)
n = 17 (4.39%)
Tryptophan (Trp, W)
n = 12 (3.1%)
Aspartic acid (Asp, D)
n = 10 (2.58%)
Glutamic acid (Glu, E)
n = 6 (1.55%)
Asparagine (Asn, N)
n = 16 (4.13%)
Glutamine (Gln, Q)
n = 9 (2.33%)
Histidine (His, H)
n = 11 (2.84%)
Lysine (Lys, K)
n = 9 (2.33%)
Arginine (Arg, R)
n = 10 (2.58%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 21 12 6 14 30 5 15 6 3 1 6 7 1 5 21
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 4 14 9 0 1 3 18 3 2 6 14 3 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 12 0 2 10 12 0 0 3 1 16 1 2 2 14 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 5 1 2 8 7 2 1 2 6 1 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
83 110 98 97
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
51 102 78 157
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
26 159 164 39
ND1 (size: 963 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (5.0%)
Alanine (Ala, A)
n = 30 (9.38%)
Serine (Ser, S)
n = 25 (7.81%)
Threonine (Thr, T)
n = 29 (9.06%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 15 (4.69%)
Leucine (Leu, L)
n = 65 (20.31%)
Isoleucine (Ile, I)
n = 23 (7.19%)
Methionine (Met, M)
n = 12 (3.75%)
Proline (Pro, P)
n = 18 (5.63%)
Phenylalanine (Phe, F)
n = 20 (6.25%)
Tyrosine (Tyr, Y)
n = 11 (3.44%)
Tryptophan (Trp, W)
n = 8 (2.5%)
Aspartic acid (Asp, D)
n = 3 (0.94%)
Glutamic acid (Glu, E)
n = 10 (3.13%)
Asparagine (Asn, N)
n = 11 (3.44%)
Glutamine (Gln, Q)
n = 6 (1.88%)
Histidine (His, H)
n = 3 (0.94%)
Lysine (Lys, K)
n = 7 (2.19%)
Arginine (Arg, R)
n = 7 (2.19%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 13 10 8 4 27 12 10 4 2 2 6 4 3 8 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 1 18 10 1 1 6 4 5 1 9 5 3 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 13 2 3 6 10 2 1 3 4 7 4 4 3 8 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 5 5 1 2 5 2 2 0 4 1 0 1 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 85 87 75
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 98 51 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
49 110 115 47
ND2 (size: 1056 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (3.13%)
Alanine (Ala, A)
n = 29 (8.26%)
Serine (Ser, S)
n = 33 (9.4%)
Threonine (Thr, T)
n = 45 (12.82%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (3.99%)
Leucine (Leu, L)
n = 65 (18.52%)
Isoleucine (Ile, I)
n = 36 (10.26%)
Methionine (Met, M)
n = 12 (3.42%)
Proline (Pro, P)
n = 17 (4.84%)
Phenylalanine (Phe, F)
n = 15 (4.27%)
Tyrosine (Tyr, Y)
n = 9 (2.56%)
Tryptophan (Trp, W)
n = 10 (2.85%)
Aspartic acid (Asp, D)
n = 1 (0.28%)
Glutamic acid (Glu, E)
n = 7 (1.99%)
Asparagine (Asn, N)
n = 12 (3.42%)
Glutamine (Gln, Q)
n = 15 (4.27%)
Histidine (His, H)
n = 3 (0.85%)
Lysine (Lys, K)
n = 12 (3.42%)
Arginine (Arg, R)
n = 5 (1.42%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 19 9 9 13 33 4 6 12 3 1 3 6 4 2 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 3 16 10 0 0 5 3 3 2 3 12 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 24 1 5 16 7 1 0 4 5 4 2 0 2 10 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 5 2 0 1 8 4 0 2 3 0 0 0 1 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
62 99 121 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 120 60 142
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 127 147 51
ND3 (size: 1056 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (3.13%)
Alanine (Ala, A)
n = 29 (8.26%)
Serine (Ser, S)
n = 33 (9.4%)
Threonine (Thr, T)
n = 45 (12.82%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (3.99%)
Leucine (Leu, L)
n = 65 (18.52%)
Isoleucine (Ile, I)
n = 36 (10.26%)
Methionine (Met, M)
n = 12 (3.42%)
Proline (Pro, P)
n = 17 (4.84%)
Phenylalanine (Phe, F)
n = 15 (4.27%)
Tyrosine (Tyr, Y)
n = 9 (2.56%)
Tryptophan (Trp, W)
n = 10 (2.85%)
Aspartic acid (Asp, D)
n = 1 (0.28%)
Glutamic acid (Glu, E)
n = 7 (1.99%)
Asparagine (Asn, N)
n = 12 (3.42%)
Glutamine (Gln, Q)
n = 15 (4.27%)
Histidine (His, H)
n = 3 (0.85%)
Lysine (Lys, K)
n = 12 (3.42%)
Arginine (Arg, R)
n = 5 (1.42%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 19 9 9 13 33 4 6 12 3 1 3 6 4 2 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 3 16 10 0 0 5 3 3 2 3 12 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 24 1 5 16 7 1 0 4 5 4 2 0 2 10 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 5 2 0 1 8 4 0 2 3 0 0 0 1 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
62 99 121 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 120 60 142
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 127 147 51
ND4 (size: 1374 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (4.81%)
Alanine (Ala, A)
n = 33 (7.22%)
Serine (Ser, S)
n = 38 (8.32%)
Threonine (Thr, T)
n = 52 (11.38%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 15 (3.28%)
Leucine (Leu, L)
n = 90 (19.69%)
Isoleucine (Ile, I)
n = 35 (7.66%)
Methionine (Met, M)
n = 35 (7.66%)
Proline (Pro, P)
n = 24 (5.25%)
Phenylalanine (Phe, F)
n = 15 (3.28%)
Tyrosine (Tyr, Y)
n = 13 (2.84%)
Tryptophan (Trp, W)
n = 11 (2.41%)
Aspartic acid (Asp, D)
n = 7 (1.53%)
Glutamic acid (Glu, E)
n = 7 (1.53%)
Asparagine (Asn, N)
n = 11 (2.41%)
Glutamine (Gln, Q)
n = 17 (3.72%)
Histidine (His, H)
n = 10 (2.19%)
Lysine (Lys, K)
n = 8 (1.75%)
Arginine (Arg, R)
n = 9 (1.97%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 14 26 12 11 38 8 19 17 0 2 2 10 1 8 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 0 5 1 18 12 2 1 8 11 2 2 11 10 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
26 19 5 4 12 11 2 1 8 3 10 2 2 3 8 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 6 1 0 7 8 0 0 0 8 1 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
84 129 150 95
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
56 138 74 190
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
36 157 205 60
ND4L (size: 294 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.12%)
Alanine (Ala, A)
n = 8 (8.25%)
Serine (Ser, S)
n = 10 (10.31%)
Threonine (Thr, T)
n = 11 (11.34%)
Cysteine (Cys, C)
n = 3 (3.09%)
Valine (Val, V)
n = 3 (3.09%)
Leucine (Leu, L)
n = 22 (22.68%)
Isoleucine (Ile, I)
n = 6 (6.19%)
Methionine (Met, M)
n = 3 (3.09%)
Proline (Pro, P)
n = 2 (2.06%)
Phenylalanine (Phe, F)
n = 8 (8.25%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.03%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 2 (2.06%)
Asparagine (Asn, N)
n = 7 (7.22%)
Glutamine (Gln, Q)
n = 1 (1.03%)
Histidine (His, H)
n = 3 (3.09%)
Lysine (Lys, K)
n = 1 (1.03%)
Arginine (Arg, R)
n = 2 (2.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 4 2 0 5 11 3 1 1 0 0 2 1 0 1 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 2 1 1 5 2 0 1 2 1 0 0 2 0 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 4 1 1 4 5 0 0 0 0 0 1 2 2 5 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 1 1 0 0 1 0 0 1 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
17 27 28 26
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
10 31 15 42
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 45 32 12
ND5 (size: 1860 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (4.2%)
Alanine (Ala, A)
n = 54 (8.72%)
Serine (Ser, S)
n = 58 (9.37%)
Threonine (Thr, T)
n = 67 (10.82%)
Cysteine (Cys, C)
n = 4 (0.65%)
Valine (Val, V)
n = 17 (2.75%)
Leucine (Leu, L)
n = 99 (15.99%)
Isoleucine (Ile, I)
n = 56 (9.05%)
Methionine (Met, M)
n = 37 (5.98%)
Proline (Pro, P)
n = 31 (5.01%)
Phenylalanine (Phe, F)
n = 30 (4.85%)
Tyrosine (Tyr, Y)
n = 16 (2.58%)
Tryptophan (Trp, W)
n = 7 (1.13%)
Aspartic acid (Asp, D)
n = 15 (2.42%)
Glutamic acid (Glu, E)
n = 14 (2.26%)
Asparagine (Asn, N)
n = 23 (3.72%)
Glutamine (Gln, Q)
n = 20 (3.23%)
Histidine (His, H)
n = 13 (2.1%)
Lysine (Lys, K)
n = 24 (3.88%)
Arginine (Arg, R)
n = 8 (1.29%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
31 25 27 10 12 49 10 15 16 4 1 4 9 3 8 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 0 4 9 23 22 0 1 11 10 4 8 9 13 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
39 20 1 4 17 21 3 0 13 5 11 2 3 5 18 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 11 3 3 12 24 0 0 2 6 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
126 153 220 121
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
58 197 126 239
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
44 233 249 94
ND6 (size: 525 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (16.09%)
Alanine (Ala, A)
n = 10 (5.75%)
Serine (Ser, S)
n = 14 (8.05%)
Threonine (Thr, T)
n = 4 (2.3%)
Cysteine (Cys, C)
n = 5 (2.87%)
Valine (Val, V)
n = 24 (13.79%)
Leucine (Leu, L)
n = 27 (15.52%)
Isoleucine (Ile, I)
n = 9 (5.17%)
Methionine (Met, M)
n = 7 (4.02%)
Proline (Pro, P)
n = 1 (0.57%)
Phenylalanine (Phe, F)
n = 14 (8.05%)
Tyrosine (Tyr, Y)
n = 8 (4.6%)
Tryptophan (Trp, W)
n = 5 (2.87%)
Aspartic acid (Asp, D)
n = 5 (2.87%)
Glutamic acid (Glu, E)
n = 4 (2.3%)
Asparagine (Asn, N)
n = 1 (0.57%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 2 (1.15%)
Lysine (Lys, K)
n = 2 (1.15%)
Arginine (Arg, R)
n = 4 (2.3%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 1 5 4 1 1 6 6 0 0 8 0 4 12 12 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 4 1 6 0 3 1 8 1 5 14 0 0 0 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 1 3 0 1 2 5 3 7 1 4 9 1 0 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 0 4 5 0 1 1 2 0 0 2 0 1 0 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 19 32 53
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
51 21 22 81
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
60 11 28 76
Total protein-coding genes (size: 11468 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 214 (5.6%)
Alanine (Ala, A)
n = 285 (7.46%)
Serine (Ser, S)
n = 294 (7.69%)
Threonine (Thr, T)
n = 365 (9.55%)
Cysteine (Cys, C)
n = 26 (0.68%)
Valine (Val, V)
n = 183 (4.79%)
Leucine (Leu, L)
n = 652 (17.06%)
Isoleucine (Ile, I)
n = 297 (7.77%)
Methionine (Met, M)
n = 202 (5.29%)
Proline (Pro, P)
n = 204 (5.34%)
Phenylalanine (Phe, F)
n = 218 (5.71%)
Tyrosine (Tyr, Y)
n = 117 (3.06%)
Tryptophan (Trp, W)
n = 100 (2.62%)
Aspartic acid (Asp, D)
n = 74 (1.94%)
Glutamic acid (Glu, E)
n = 90 (2.36%)
Asparagine (Asn, N)
n = 130 (3.4%)
Glutamine (Gln, Q)
n = 109 (2.85%)
Histidine (His, H)
n = 93 (2.43%)
Lysine (Lys, K)
n = 89 (2.33%)
Arginine (Arg, R)
n = 69 (1.81%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
138 159 151 71 86 285 77 107 89 20 37 38 73 35 81 137
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
51 9 17 39 138 103 5 18 55 96 45 23 53 114 14 37
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
158 155 15 32 83 105 11 8 55 42 75 21 26 31 99 16
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
77 67 23 17 57 79 10 6 14 43 6 0 2 8 1 79
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
846 994 1148 834
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
474 1085 711 1552
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
362 1301 1554 605 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​C​r​o​c​o​d​y​l​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ n​o​v​a​e​g​u​i​n​e​a​e​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.