Viewing data for Pollachius virens


Scientific name Pollachius virens
Common name Pollock
Maximum lifespan 25.00 years (Pollachius virens@AnAge)

Total mtDNA (size: 16556 bases) GC AT G C A T
Base content (bases) 7109 9447 4280 2829 4865 4582
Base content per 1 kb (bases) 429 571 259 171 294 277
Base content (%) 42.9% 57.1%
Total protein-coding genes (size: 11405 bases) GC AT G C A T
Base content (bases) 4866 6539 3072 1794 3550 2989
Base content per 1 kb (bases) 427 573 269 157 311 262
Base content (%) 42.7% 57.3%
D-loop (size: 873 bases) GC AT G C A T
Base content (bases) 315 558 180 135 298 260
Base content per 1 kb (bases) 361 639 206 155 341 298
Base content (%) 36.1% 63.9%
Total tRNA-coding genes (size: 1536 bases) GC AT G C A T
Base content (bases) 705 831 387 318 375 456
Base content per 1 kb (bases) 459 541 252 207 244 297
Base content (%) 45.9% 54.1%
Total rRNA-coding genes (size: 2617 bases) GC AT G C A T
Base content (bases) 1161 1456 608 553 610 846
Base content per 1 kb (bases) 444 556 232 211 233 323
Base content (%) 44.4% 55.6%
12S rRNA gene (size: 952 bases) GC AT G C A T
Base content (bases) 434 518 224 210 217 301
Base content per 1 kb (bases) 456 544 235 221 228 316
Base content (%) 45.6% 54.4%
16S rRNA gene (size: 1665 bases) GC AT G C A T
Base content (bases) 727 938 384 343 393 545
Base content per 1 kb (bases) 437 563 231 206 236 327
Base content (%) 43.7% 56.3%

ATP6 (size: 682 bases) GC AT G C A T
Base content (bases) 275 407 189 86 230 177
Base content per 1 kb (bases) 403 597 277 126 337 260
Base content (%) 40.3% 59.7%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 73 95 57 16 44 51
Base content per 1 kb (bases) 435 565 339 95 262 304
Base content (%) 43.5% 56.5%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 662 889 388 274 492 397
Base content per 1 kb (bases) 427 573 250 177 317 256
Base content (%) 42.7% 57.3%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 279 412 169 110 206 206
Base content per 1 kb (bases) 404 596 245 159 298 298
Base content (%) 40.4% 59.6%
COX3 (size: 786 bases) GC AT G C A T
Base content (bases) 347 439 213 134 236 203
Base content per 1 kb (bases) 441 559 271 170 300 258
Base content (%) 44.1% 55.9%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 488 653 307 181 379 274
Base content per 1 kb (bases) 428 572 269 159 332 240
Base content (%) 42.8% 57.2%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 436 539 272 164 317 222
Base content per 1 kb (bases) 447 553 279 168 325 228
Base content (%) 44.7% 55.3%
ND2 (size: 1045 bases) GC AT G C A T
Base content (bases) 436 609 280 156 332 277
Base content per 1 kb (bases) 417 583 268 149 318 265
Base content (%) 41.7% 58.3%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 160 189 100 60 115 74
Base content per 1 kb (bases) 458 542 287 172 330 212
Base content (%) 45.8% 54.2%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 581 800 365 216 450 350
Base content per 1 kb (bases) 421 579 264 156 326 253
Base content (%) 42.1% 57.9%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 139 158 91 48 90 68
Base content per 1 kb (bases) 468 532 306 162 303 229
Base content (%) 46.8% 53.2%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 759 1080 490 269 572 508
Base content per 1 kb (bases) 413 587 266 146 311 276
Base content (%) 41.3% 58.7%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 238 284 156 82 92 192
Base content per 1 kb (bases) 456 544 299 157 176 368
Base content (%) 45.6% 54.4%

ATP6 (size: 682 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.87%)
Alanine (Ala, A)
n = 18 (7.96%)
Serine (Ser, S)
n = 13 (5.75%)
Threonine (Thr, T)
n = 18 (7.96%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (6.19%)
Leucine (Leu, L)
n = 53 (23.45%)
Isoleucine (Ile, I)
n = 18 (7.96%)
Methionine (Met, M)
n = 13 (5.75%)
Proline (Pro, P)
n = 17 (7.52%)
Phenylalanine (Phe, F)
n = 12 (5.31%)
Tyrosine (Tyr, Y)
n = 3 (1.33%)
Tryptophan (Trp, W)
n = 5 (2.21%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.77%)
Asparagine (Asn, N)
n = 8 (3.54%)
Glutamine (Gln, Q)
n = 7 (3.1%)
Histidine (His, H)
n = 5 (2.21%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 3 10 15 9 12 2 15 7 0 6 4 4 0 7 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 5 7 5 1 3 4 3 1 7 5 5 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 8 3 3 2 3 0 0 5 1 2 0 0 7 1 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 4 0 0 1 0 1 0 2 4 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
48 73 63 43
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
27 61 29 110
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 55 85 76
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFMIFMFTWAIFLTILPPKVMAHTFPNEPSPQGMTTPKTSPWNWPWH*
Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.82%)
Alanine (Ala, A)
n = 3 (5.45%)
Serine (Ser, S)
n = 2 (3.64%)
Threonine (Thr, T)
n = 6 (10.91%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.82%)
Leucine (Leu, L)
n = 3 (5.45%)
Isoleucine (Ile, I)
n = 3 (5.45%)
Methionine (Met, M)
n = 5 (9.09%)
Proline (Pro, P)
n = 11 (20.0%)
Phenylalanine (Phe, F)
n = 5 (9.09%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 1 (1.82%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 1 3 1 0 1 0 1 1 1 0 0 1 0 2 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 1 2 0 0 1 0 0 4 5 2 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 2 0 1 1 0 0 0 0 0 0 0 0 1 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 0 1 0 0 2 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
6 17 19 14
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 22 11 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 18 21 13
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.91%)
Alanine (Ala, A)
n = 48 (9.3%)
Serine (Ser, S)
n = 27 (5.23%)
Threonine (Thr, T)
n = 36 (6.98%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 39 (7.56%)
Leucine (Leu, L)
n = 63 (12.21%)
Isoleucine (Ile, I)
n = 39 (7.56%)
Methionine (Met, M)
n = 27 (5.23%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 9 (1.74%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 9 19 15 13 16 6 13 6 2 8 9 17 5 20 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 1 0 15 16 17 0 11 13 14 8 10 11 6 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 22 0 8 6 8 1 2 2 9 9 1 0 9 6 10
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 7 4 9 6 8 0 3 1 3 2 0 0 1 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
159 114 129 115
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 135 95 210
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
38 139 173 167
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 18 (7.86%)
Serine (Ser, S)
n = 17 (7.42%)
Threonine (Thr, T)
n = 9 (3.93%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 17 (7.42%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 22 (9.61%)
Methionine (Met, M)
n = 11 (4.8%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 4 (1.75%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 5 8 9 1 11 0 7 8 0 7 3 7 0 4 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 0 1 6 8 3 3 1 5 0 3 5 5 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 3 0 5 2 7 0 1 2 5 4 0 0 2 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 10 5 6 7 3 1 2 1 3 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 59 53 46
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 55 63 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 55 90 72
COX3 (size: 786 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.43%)
Alanine (Ala, A)
n = 22 (8.43%)
Serine (Ser, S)
n = 13 (4.98%)
Threonine (Thr, T)
n = 25 (9.58%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 16 (6.13%)
Leucine (Leu, L)
n = 31 (11.88%)
Isoleucine (Ile, I)
n = 14 (5.36%)
Methionine (Met, M)
n = 8 (3.07%)
Proline (Pro, P)
n = 12 (4.6%)
Phenylalanine (Phe, F)
n = 24 (9.2%)
Tyrosine (Tyr, Y)
n = 12 (4.6%)
Tryptophan (Trp, W)
n = 12 (4.6%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.83%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 7 (2.68%)
Histidine (His, H)
n = 17 (6.51%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 6 (2.3%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 6 5 7 6 6 1 11 6 1 4 5 7 0 12 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 1 4 6 10 2 3 11 5 3 3 6 3 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 12 0 2 3 5 0 0 3 5 7 1 0 1 0 9
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 7 3 3 2 2 0 2 0 4 0 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 62 53 72
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
45 69 55 93
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 82 95 71
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 26 (6.86%)
Serine (Ser, S)
n = 22 (5.8%)
Threonine (Thr, T)
n = 25 (6.6%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 32 (8.44%)
Leucine (Leu, L)
n = 58 (15.3%)
Isoleucine (Ile, I)
n = 22 (5.8%)
Methionine (Met, M)
n = 14 (3.69%)
Proline (Pro, P)
n = 22 (5.8%)
Phenylalanine (Phe, F)
n = 34 (8.97%)
Tyrosine (Tyr, Y)
n = 13 (3.43%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 7 (1.85%)
Asparagine (Asn, N)
n = 19 (5.01%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 8 (2.11%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 10 7 16 11 16 6 9 6 0 15 4 8 5 19 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 3 8 10 8 0 4 11 9 2 6 13 2 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 9 1 6 5 9 1 0 1 8 5 1 0 10 9 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 5 2 6 5 7 1 1 2 3 2 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
102 97 89 92
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
50 94 76 160
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 116 109 126
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (5.25%)
Alanine (Ala, A)
n = 34 (10.49%)
Serine (Ser, S)
n = 29 (8.95%)
Threonine (Thr, T)
n = 21 (6.48%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 24 (7.41%)
Leucine (Leu, L)
n = 59 (18.21%)
Isoleucine (Ile, I)
n = 17 (5.25%)
Methionine (Met, M)
n = 11 (3.4%)
Proline (Pro, P)
n = 22 (6.79%)
Phenylalanine (Phe, F)
n = 19 (5.86%)
Tyrosine (Tyr, Y)
n = 13 (4.01%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 10 (3.09%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 3 (0.93%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 4 5 18 13 12 1 11 5 1 9 4 8 3 11 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 1 6 17 10 1 3 8 3 3 8 7 5 2 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 10 0 10 4 6 3 6 0 8 5 1 4 5 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 7 4 2 2 6 1 3 2 0 3 0 0 0 1 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
90 83 72 80
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 100 55 130
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
34 89 95 107
ND2 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.61%)
Alanine (Ala, A)
n = 40 (11.53%)
Serine (Ser, S)
n = 29 (8.36%)
Threonine (Thr, T)
n = 37 (10.66%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 9 (2.59%)
Leucine (Leu, L)
n = 67 (19.31%)
Isoleucine (Ile, I)
n = 28 (8.07%)
Methionine (Met, M)
n = 16 (4.61%)
Proline (Pro, P)
n = 20 (5.76%)
Phenylalanine (Phe, F)
n = 15 (4.32%)
Tyrosine (Tyr, Y)
n = 6 (1.73%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 12 (3.46%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 8 (2.31%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 11 9 15 7 11 5 20 10 4 1 1 6 1 11 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 1 0 15 11 13 1 5 6 1 4 10 6 3 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 17 2 8 6 8 1 2 4 5 1 3 9 10 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 2 3 0 3 5 3 1 0 2 1 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 83 107 85
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 120 55 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
45 77 115 111
ND3 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.61%)
Alanine (Ala, A)
n = 40 (11.53%)
Serine (Ser, S)
n = 29 (8.36%)
Threonine (Thr, T)
n = 37 (10.66%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 9 (2.59%)
Leucine (Leu, L)
n = 67 (19.31%)
Isoleucine (Ile, I)
n = 28 (8.07%)
Methionine (Met, M)
n = 16 (4.61%)
Proline (Pro, P)
n = 20 (5.76%)
Phenylalanine (Phe, F)
n = 15 (4.32%)
Tyrosine (Tyr, Y)
n = 6 (1.73%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 12 (3.46%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 8 (2.31%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 11 9 15 7 11 5 20 10 4 1 1 6 1 11 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 1 0 15 11 13 1 5 6 1 4 10 6 3 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 17 2 8 6 8 1 2 4 5 1 3 9 10 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 2 3 0 3 5 3 1 0 2 1 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 83 107 85
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 120 55 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
45 77 115 111
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (5.88%)
Alanine (Ala, A)
n = 40 (8.71%)
Serine (Ser, S)
n = 32 (6.97%)
Threonine (Thr, T)
n = 38 (8.28%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 16 (3.49%)
Leucine (Leu, L)
n = 100 (21.79%)
Isoleucine (Ile, I)
n = 31 (6.75%)
Methionine (Met, M)
n = 29 (6.32%)
Proline (Pro, P)
n = 28 (6.1%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 18 (3.92%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 9 (1.96%)
Asparagine (Asn, N)
n = 13 (2.83%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 9 (1.96%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 7 21 36 14 18 5 21 11 0 6 4 5 1 13 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 3 1 17 13 8 2 1 9 8 9 12 12 4 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 16 2 4 7 9 2 5 5 7 7 5 6 9 4 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 3 6 2 2 8 2 3 2 4 2 0 0 0 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
96 132 131 101
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
70 128 70 192
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
50 105 149 156
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 16 (16.33%)
Serine (Ser, S)
n = 8 (8.16%)
Threonine (Thr, T)
n = 9 (9.18%)
Cysteine (Cys, C)
n = 4 (4.08%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 8 (8.16%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 3 (3.06%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 1 (1.02%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 5 (5.1%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 6 6 5 5 1 4 2 1 0 0 1 0 5 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 2 4 9 2 1 1 1 1 1 0 2 0 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 5 0 1 3 2 1 1 0 0 0 1 1 1 0 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 1 1 2 1 0 0 0 0 2 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
26 29 21 23
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
12 34 15 38
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 28 32 29
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 33 (5.39%)
Alanine (Ala, A)
n = 59 (9.64%)
Serine (Ser, S)
n = 49 (8.01%)
Threonine (Thr, T)
n = 61 (9.97%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 30 (4.9%)
Leucine (Leu, L)
n = 107 (17.48%)
Isoleucine (Ile, I)
n = 42 (6.86%)
Methionine (Met, M)
n = 25 (4.08%)
Proline (Pro, P)
n = 27 (4.41%)
Phenylalanine (Phe, F)
n = 37 (6.05%)
Tyrosine (Tyr, Y)
n = 9 (1.47%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 12 (1.96%)
Glutamic acid (Glu, E)
n = 11 (1.8%)
Asparagine (Asn, N)
n = 25 (4.08%)
Glutamine (Gln, Q)
n = 19 (3.1%)
Histidine (His, H)
n = 16 (2.61%)
Lysine (Lys, K)
n = 20 (3.27%)
Arginine (Arg, R)
n = 10 (1.63%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
29 13 17 31 15 26 7 22 17 2 10 6 11 3 24 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 2 4 18 21 18 2 3 13 12 5 11 6 9 1 19
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
20 20 2 13 9 9 1 7 10 4 5 2 6 15 10 8
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 10 1 8 4 16 4 2 3 5 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
145 151 190 127
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
80 179 113 241
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
44 160 205 204
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.45%)
Alanine (Ala, A)
n = 19 (10.98%)
Serine (Ser, S)
n = 12 (6.94%)
Threonine (Thr, T)
n = 3 (1.73%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 25 (14.45%)
Leucine (Leu, L)
n = 35 (20.23%)
Isoleucine (Ile, I)
n = 5 (2.89%)
Methionine (Met, M)
n = 7 (4.05%)
Proline (Pro, P)
n = 5 (2.89%)
Phenylalanine (Phe, F)
n = 6 (3.47%)
Tyrosine (Tyr, Y)
n = 8 (4.62%)
Tryptophan (Trp, W)
n = 7 (4.05%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 7 (4.05%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (1.73%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 0 3 9 1 3 1 16 0 0 7 0 12 6 3 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 2 0 7 6 3 3 8 3 6 8 3 1 0 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 3 3 3 2 1 0 7 1 1 5 0 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 5 1 1 0 0 1 0 0 2 0 1 0 0 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
78 23 18 55
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 38 19 78
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
39 21 55 59
Total protein-coding genes (size: 11427 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 243 (6.38%)
Alanine (Ala, A)
n = 352 (9.25%)
Serine (Ser, S)
n = 264 (6.94%)
Threonine (Thr, T)
n = 292 (7.67%)
Cysteine (Cys, C)
n = 27 (0.71%)
Valine (Val, V)
n = 228 (5.99%)
Leucine (Leu, L)
n = 655 (17.21%)
Isoleucine (Ile, I)
n = 252 (6.62%)
Methionine (Met, M)
n = 175 (4.6%)
Proline (Pro, P)
n = 216 (5.68%)
Phenylalanine (Phe, F)
n = 232 (6.1%)
Tyrosine (Tyr, Y)
n = 108 (2.84%)
Tryptophan (Trp, W)
n = 120 (3.15%)
Aspartic acid (Asp, D)
n = 77 (2.02%)
Glutamic acid (Glu, E)
n = 99 (2.6%)
Asparagine (Asn, N)
n = 114 (3.0%)
Glutamine (Gln, Q)
n = 94 (2.47%)
Histidine (His, H)
n = 106 (2.79%)
Lysine (Lys, K)
n = 71 (1.87%)
Arginine (Arg, R)
n = 75 (1.97%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
177 75 113 187 97 145 39 154 81 13 75 41 87 25 138 94
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
62 15 12 101 128 107 16 46 83 69 45 78 85 45 8 74
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
80 128 10 68 53 71 12 26 34 60 48 16 33 70 44 51
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
55 62 37 39 38 57 14 18 13 31 13 0 1 5 1 104
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
999 959 965 884
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
526 1064 675 1542
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
345 980 1259 1223 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​o​l​l​a​c​h​i​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ v​i​r​e​n​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.