Viewing data for Ficedula albicollis


Scientific name Ficedula albicollis
Common name Collared flycatcher
Maximum lifespan 9.80 years (Ficedula albicollis@AnAge)

Total mtDNA (size: 16787 bases) GC AT G C A T
Base content (bases) 8117 8670 5556 2561 3792 4878
Base content per 1 kb (bases) 484 516 331 153 226 291
Base content (%) 48.4% 51.6%
Total protein-coding genes (size: 11387 bases) GC AT G C A T
Base content (bases) 5678 5709 4093 1585 2516 3193
Base content per 1 kb (bases) 499 501 359 139 221 280
Base content (%) 49.9% 50.1%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1543 bases) GC AT G C A T
Base content (bases) 652 891 386 266 381 510
Base content per 1 kb (bases) 423 577 250 172 247 331
Base content (%) 42.3% 57.7%
Total rRNA-coding genes (size: 2579 bases) GC AT G C A T
Base content (bases) 1204 1375 678 526 536 839
Base content per 1 kb (bases) 467 533 263 204 208 325
Base content (%) 46.7% 53.3%
12S rRNA gene (size: 983 bases) GC AT G C A T
Base content (bases) 483 500 276 207 202 298
Base content per 1 kb (bases) 491 509 281 211 205 303
Base content (%) 49.1% 50.9%
16S rRNA gene (size: 1596 bases) GC AT G C A T
Base content (bases) 721 875 402 319 334 541
Base content per 1 kb (bases) 452 548 252 200 209 339
Base content (%) 45.2% 54.8%

ATP6 (size: 693 bases) GC AT G C A T
Base content (bases) 352 341 271 81 151 190
Base content per 1 kb (bases) 508 492 391 117 218 274
Base content (%) 50.8% 49.2%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 71 97 62 9 43 54
Base content per 1 kb (bases) 423 577 369 54 256 321
Base content (%) 42.3% 57.7%
COX1 (size: 1560 bases) GC AT G C A T
Base content (bases) 781 779 513 268 361 418
Base content per 1 kb (bases) 501 499 329 172 231 268
Base content (%) 50.1% 49.9%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 341 343 230 111 157 186
Base content per 1 kb (bases) 499 501 336 162 230 272
Base content (%) 49.9% 50.1%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 407 377 285 122 176 201
Base content per 1 kb (bases) 519 481 364 156 224 256
Base content (%) 51.9% 48.1%
CYTB (size: 1143 bases) GC AT G C A T
Base content (bases) 562 581 399 163 269 312
Base content per 1 kb (bases) 492 508 349 143 235 273
Base content (%) 49.2% 50.8%
ND1 (size: 978 bases) GC AT G C A T
Base content (bases) 507 471 354 153 223 248
Base content per 1 kb (bases) 518 482 362 156 228 254
Base content (%) 51.8% 48.2%
ND2 (size: 1040 bases) GC AT G C A T
Base content (bases) 507 533 379 128 232 301
Base content per 1 kb (bases) 488 513 364 123 223 289
Base content (%) 48.8% 51.3%
ND3 (size: 351 bases) GC AT G C A T
Base content (bases) 172 179 116 56 85 94
Base content per 1 kb (bases) 490 510 330 160 242 268
Base content (%) 49.0% 51.0%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 683 695 517 166 298 397
Base content per 1 kb (bases) 496 504 375 120 216 288
Base content (%) 49.6% 50.4%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 152 145 109 43 69 76
Base content per 1 kb (bases) 512 488 367 145 232 256
Base content (%) 51.2% 48.8%
ND5 (size: 1818 bases) GC AT G C A T
Base content (bases) 881 937 656 225 405 532
Base content per 1 kb (bases) 485 515 361 124 223 293
Base content (%) 48.5% 51.5%
ND6 (size: 519 bases) GC AT G C A T
Base content (bases) 272 247 209 63 53 194
Base content per 1 kb (bases) 524 476 403 121 102 374
Base content (%) 52.4% 47.6%

ATP6 (size: 693 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.48%)
Alanine (Ala, A)
n = 16 (6.96%)
Serine (Ser, S)
n = 17 (7.39%)
Threonine (Thr, T)
n = 23 (10.0%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (3.91%)
Leucine (Leu, L)
n = 62 (26.96%)
Isoleucine (Ile, I)
n = 18 (7.83%)
Methionine (Met, M)
n = 10 (4.35%)
Proline (Pro, P)
n = 16 (6.96%)
Phenylalanine (Phe, F)
n = 10 (4.35%)
Tyrosine (Tyr, Y)
n = 3 (1.3%)
Tryptophan (Trp, W)
n = 4 (1.74%)
Aspartic acid (Asp, D)
n = 1 (0.43%)
Glutamic acid (Glu, E)
n = 4 (1.74%)
Asparagine (Asn, N)
n = 8 (3.48%)
Glutamine (Gln, Q)
n = 8 (3.48%)
Histidine (His, H)
n = 4 (1.74%)
Lysine (Lys, K)
n = 4 (1.74%)
Arginine (Arg, R)
n = 5 (2.17%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 17 4 1 18 33 8 2 6 2 0 5 3 1 2 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 0 1 13 2 0 1 5 1 1 1 6 8 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 12 0 0 8 4 0 0 5 0 3 1 0 1 7 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 4 0 0 1 4 0 0 2 3 0 0 0 0 1 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
38 93 68 32
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
22 67 33 109
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 111 89 10
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPNPWFFIMLTSWLTFSLIIQPKLLTFITMNPPYNKPPMTPKTTPWSWPWT*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 8 (14.55%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 6 (10.91%)
Isoleucine (Ile, I)
n = 4 (7.27%)
Methionine (Met, M)
n = 4 (7.27%)
Proline (Pro, P)
n = 11 (20.0%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 1 (1.82%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 4 (7.27%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 4 2 0 3 2 0 1 1 1 0 0 0 0 2 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 0 0 0 0 0 0 0 3 5 3 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 2 0 1 1 1 0 0 0 1 0 0 0 1 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 0 0 0 2 1 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
0 18 23 15
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
5 22 11 18
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 22 20 10
COX1 (size: 1560 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.06%)
Alanine (Ala, A)
n = 48 (9.25%)
Serine (Ser, S)
n = 28 (5.39%)
Threonine (Thr, T)
n = 37 (7.13%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 38 (7.32%)
Leucine (Leu, L)
n = 63 (12.14%)
Isoleucine (Ile, I)
n = 41 (7.9%)
Methionine (Met, M)
n = 22 (4.24%)
Proline (Pro, P)
n = 31 (5.97%)
Phenylalanine (Phe, F)
n = 44 (8.48%)
Tyrosine (Tyr, Y)
n = 17 (3.28%)
Tryptophan (Trp, W)
n = 17 (3.28%)
Aspartic acid (Asp, D)
n = 15 (2.89%)
Glutamic acid (Glu, E)
n = 10 (1.93%)
Asparagine (Asn, N)
n = 15 (2.89%)
Glutamine (Gln, Q)
n = 9 (1.73%)
Histidine (His, H)
n = 19 (3.66%)
Lysine (Lys, K)
n = 9 (1.73%)
Arginine (Arg, R)
n = 8 (1.54%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 35 15 6 16 33 7 1 9 0 3 12 15 8 3 41
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 1 2 30 16 0 6 12 22 7 5 7 19 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 17 0 6 9 9 0 0 4 1 16 0 0 2 13 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
17 8 2 2 13 9 0 1 2 5 0 0 1 0 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
158 129 129 104
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 140 94 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
32 244 195 49
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 17 (7.49%)
Serine (Ser, S)
n = 22 (9.69%)
Threonine (Thr, T)
n = 12 (5.29%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 18 (7.93%)
Leucine (Leu, L)
n = 31 (13.66%)
Isoleucine (Ile, I)
n = 13 (5.73%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 13 (5.73%)
Phenylalanine (Phe, F)
n = 9 (3.96%)
Tyrosine (Tyr, Y)
n = 8 (3.52%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 13 (5.73%)
Glutamic acid (Glu, E)
n = 13 (5.73%)
Asparagine (Asn, N)
n = 6 (2.64%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 8 (3.52%)
Lysine (Lys, K)
n = 5 (2.2%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 9 4 4 11 13 2 0 6 1 2 11 5 0 0 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 3 7 8 2 0 1 1 5 1 4 5 4 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 5 0 2 6 9 1 0 4 0 8 0 1 0 6 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 9 4 2 11 5 0 2 2 2 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
69 64 50 45
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 60 61 81
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 106 75 31
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 24 (9.23%)
Serine (Ser, S)
n = 16 (6.15%)
Threonine (Thr, T)
n = 21 (8.08%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 17 (6.54%)
Leucine (Leu, L)
n = 30 (11.54%)
Isoleucine (Ile, I)
n = 15 (5.77%)
Methionine (Met, M)
n = 7 (2.69%)
Proline (Pro, P)
n = 14 (5.38%)
Phenylalanine (Phe, F)
n = 25 (9.62%)
Tyrosine (Tyr, Y)
n = 10 (3.85%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 6 (2.31%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 3 (1.15%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 15 (5.77%)
Lysine (Lys, K)
n = 4 (1.54%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 12 6 2 11 14 3 0 9 0 1 9 6 1 1 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 0 14 10 0 2 12 6 0 1 8 5 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 8 0 3 4 5 0 0 4 1 9 0 0 1 2 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 6 1 0 6 4 0 0 3 2 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 73 54 60
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 71 54 94
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 141 93 21
CYTB (size: 1143 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.32%)
Alanine (Ala, A)
n = 32 (8.42%)
Serine (Ser, S)
n = 21 (5.53%)
Threonine (Thr, T)
n = 24 (6.32%)
Cysteine (Cys, C)
n = 4 (1.05%)
Valine (Val, V)
n = 22 (5.79%)
Leucine (Leu, L)
n = 65 (17.11%)
Isoleucine (Ile, I)
n = 32 (8.42%)
Methionine (Met, M)
n = 6 (1.58%)
Proline (Pro, P)
n = 24 (6.32%)
Phenylalanine (Phe, F)
n = 29 (7.63%)
Tyrosine (Tyr, Y)
n = 12 (3.16%)
Tryptophan (Trp, W)
n = 11 (2.89%)
Aspartic acid (Asp, D)
n = 8 (2.11%)
Glutamic acid (Glu, E)
n = 7 (1.84%)
Asparagine (Asn, N)
n = 22 (5.79%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 12 (3.16%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 25 3 3 21 35 4 2 7 1 2 8 12 0 3 26
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 4 6 15 11 0 2 10 7 5 1 9 12 2 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 11 3 2 8 10 0 0 1 1 11 0 0 4 18 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 4 3 2 6 9 0 2 1 4 1 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
93 115 94 79
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
48 100 79 154
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 184 139 36
ND1 (size: 978 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.31%)
Alanine (Ala, A)
n = 35 (10.77%)
Serine (Ser, S)
n = 24 (7.38%)
Threonine (Thr, T)
n = 17 (5.23%)
Cysteine (Cys, C)
n = 3 (0.92%)
Valine (Val, V)
n = 14 (4.31%)
Leucine (Leu, L)
n = 66 (20.31%)
Isoleucine (Ile, I)
n = 24 (7.38%)
Methionine (Met, M)
n = 11 (3.38%)
Proline (Pro, P)
n = 25 (7.69%)
Phenylalanine (Phe, F)
n = 16 (4.92%)
Tyrosine (Tyr, Y)
n = 16 (4.92%)
Tryptophan (Trp, W)
n = 8 (2.46%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.38%)
Asparagine (Asn, N)
n = 13 (4.0%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 3 (0.92%)
Lysine (Lys, K)
n = 7 (2.15%)
Arginine (Arg, R)
n = 8 (2.46%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 20 7 5 23 27 9 2 5 1 1 4 8 1 2 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 2 2 19 13 1 2 5 3 4 2 10 11 2 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 7 0 1 10 5 2 1 5 4 12 1 0 1 12 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 4 7 1 3 5 2 1 2 4 1 1 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
78 106 79 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 95 60 131
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
35 153 109 29
ND2 (size: 1040 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.48%)
Alanine (Ala, A)
n = 37 (10.72%)
Serine (Ser, S)
n = 29 (8.41%)
Threonine (Thr, T)
n = 42 (12.17%)
Cysteine (Cys, C)
n = 3 (0.87%)
Valine (Val, V)
n = 9 (2.61%)
Leucine (Leu, L)
n = 67 (19.42%)
Isoleucine (Ile, I)
n = 29 (8.41%)
Methionine (Met, M)
n = 15 (4.35%)
Proline (Pro, P)
n = 20 (5.8%)
Phenylalanine (Phe, F)
n = 13 (3.77%)
Tyrosine (Tyr, Y)
n = 7 (2.03%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 12 (3.48%)
Glutamine (Gln, Q)
n = 12 (3.48%)
Histidine (His, H)
n = 8 (2.32%)
Lysine (Lys, K)
n = 12 (3.48%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 22 10 6 15 32 11 3 10 2 1 5 1 2 3 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 3 3 18 16 0 0 4 4 4 3 9 7 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
24 10 1 4 11 7 0 0 7 1 6 2 0 4 8 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 5 0 0 1 11 1 0 1 2 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 107 117 58
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 121 57 133
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 151 126 40
ND3 (size: 1040 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.48%)
Alanine (Ala, A)
n = 37 (10.72%)
Serine (Ser, S)
n = 29 (8.41%)
Threonine (Thr, T)
n = 42 (12.17%)
Cysteine (Cys, C)
n = 3 (0.87%)
Valine (Val, V)
n = 9 (2.61%)
Leucine (Leu, L)
n = 67 (19.42%)
Isoleucine (Ile, I)
n = 29 (8.41%)
Methionine (Met, M)
n = 15 (4.35%)
Proline (Pro, P)
n = 20 (5.8%)
Phenylalanine (Phe, F)
n = 13 (3.77%)
Tyrosine (Tyr, Y)
n = 7 (2.03%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 12 (3.48%)
Glutamine (Gln, Q)
n = 12 (3.48%)
Histidine (His, H)
n = 8 (2.32%)
Lysine (Lys, K)
n = 12 (3.48%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 22 10 6 15 32 11 3 10 2 1 5 1 2 3 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 3 3 18 16 0 0 4 4 4 3 9 7 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
24 10 1 4 11 7 0 0 7 1 6 2 0 4 8 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 5 0 0 1 11 1 0 1 2 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 107 117 58
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 121 57 133
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 151 126 40
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.93%)
Alanine (Ala, A)
n = 42 (9.17%)
Serine (Ser, S)
n = 40 (8.73%)
Threonine (Thr, T)
n = 37 (8.08%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 11 (2.4%)
Leucine (Leu, L)
n = 98 (21.4%)
Isoleucine (Ile, I)
n = 42 (9.17%)
Methionine (Met, M)
n = 28 (6.11%)
Proline (Pro, P)
n = 27 (5.9%)
Phenylalanine (Phe, F)
n = 12 (2.62%)
Tyrosine (Tyr, Y)
n = 14 (3.06%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 2 (0.44%)
Glutamic acid (Glu, E)
n = 10 (2.18%)
Asparagine (Asn, N)
n = 15 (3.28%)
Glutamine (Gln, Q)
n = 13 (2.84%)
Histidine (His, H)
n = 13 (2.84%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 35 23 6 32 43 10 6 11 2 0 6 4 1 2 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 4 2 26 13 1 1 11 3 3 2 14 11 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
21 15 0 3 12 14 1 0 10 0 14 0 1 0 15 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 9 1 0 2 8 2 0 4 6 1 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
83 155 142 79
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
55 136 77 191
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
28 226 178 27
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 12 (12.24%)
Serine (Ser, S)
n = 12 (12.24%)
Threonine (Thr, T)
n = 6 (6.12%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 20 (20.41%)
Isoleucine (Ile, I)
n = 4 (4.08%)
Methionine (Met, M)
n = 7 (7.14%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 2 (2.04%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 7 (7.14%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 3 5 0 6 11 2 1 1 2 0 1 1 0 0 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 2 0 6 6 0 1 1 2 0 1 1 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 2 0 2 4 2 0 0 4 0 2 0 0 1 1 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 0 2 0 1 0 0 0 1 1 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
21 34 23 21
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 29 18 38
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 46 35 10
ND5 (size: 1818 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 33 (5.45%)
Alanine (Ala, A)
n = 53 (8.76%)
Serine (Ser, S)
n = 45 (7.44%)
Threonine (Thr, T)
n = 65 (10.74%)
Cysteine (Cys, C)
n = 7 (1.16%)
Valine (Val, V)
n = 18 (2.98%)
Leucine (Leu, L)
n = 102 (16.86%)
Isoleucine (Ile, I)
n = 61 (10.08%)
Methionine (Met, M)
n = 23 (3.8%)
Proline (Pro, P)
n = 32 (5.29%)
Phenylalanine (Phe, F)
n = 34 (5.62%)
Tyrosine (Tyr, Y)
n = 15 (2.48%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 9 (1.49%)
Glutamic acid (Glu, E)
n = 11 (1.82%)
Asparagine (Asn, N)
n = 26 (4.3%)
Glutamine (Gln, Q)
n = 18 (2.98%)
Histidine (His, H)
n = 12 (1.98%)
Lysine (Lys, K)
n = 21 (3.47%)
Arginine (Arg, R)
n = 8 (1.32%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 45 14 7 32 55 6 2 15 3 1 7 7 3 5 29
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 2 5 7 29 15 2 1 17 12 3 4 15 13 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
36 22 2 4 18 15 0 0 8 0 15 1 0 5 21 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 8 3 1 8 21 0 1 3 4 0 1 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
124 170 205 107
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
69 187 112 238
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
32 299 215 60
ND6 (size: 519 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 31 (18.02%)
Alanine (Ala, A)
n = 10 (5.81%)
Serine (Ser, S)
n = 15 (8.72%)
Threonine (Thr, T)
n = 2 (1.16%)
Cysteine (Cys, C)
n = 5 (2.91%)
Valine (Val, V)
n = 36 (20.93%)
Leucine (Leu, L)
n = 28 (16.28%)
Isoleucine (Ile, I)
n = 3 (1.74%)
Methionine (Met, M)
n = 5 (2.91%)
Proline (Pro, P)
n = 4 (2.33%)
Phenylalanine (Phe, F)
n = 8 (4.65%)
Tyrosine (Tyr, Y)
n = 6 (3.49%)
Tryptophan (Trp, W)
n = 5 (2.91%)
Aspartic acid (Asp, D)
n = 4 (2.33%)
Glutamic acid (Glu, E)
n = 3 (1.74%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 1 (0.58%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 4 (2.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 0 1 1 1 2 11 5 0 1 14 1 6 15 8 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 2 3 5 1 1 3 8 0 0 23 3 1 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 1 6 1 2 3 2 1 6 0 0 8 0 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 3 4 0 0 0 0 0 0 4 0 0 0 1 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
84 25 14 50
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
48 28 17 80
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
77 10 22 64
Total protein-coding genes (size: 11413 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 225 (5.92%)
Alanine (Ala, A)
n = 336 (8.84%)
Serine (Ser, S)
n = 280 (7.36%)
Threonine (Thr, T)
n = 302 (7.94%)
Cysteine (Cys, C)
n = 35 (0.92%)
Valine (Val, V)
n = 196 (5.16%)
Leucine (Leu, L)
n = 665 (17.49%)
Isoleucine (Ile, I)
n = 293 (7.71%)
Methionine (Met, M)
n = 155 (4.08%)
Proline (Pro, P)
n = 227 (5.97%)
Phenylalanine (Phe, F)
n = 217 (5.71%)
Tyrosine (Tyr, Y)
n = 113 (2.97%)
Tryptophan (Trp, W)
n = 107 (2.81%)
Aspartic acid (Asp, D)
n = 67 (1.76%)
Glutamic acid (Glu, E)
n = 89 (2.34%)
Asparagine (Asn, N)
n = 129 (3.39%)
Glutamine (Gln, Q)
n = 100 (2.63%)
Histidine (His, H)
n = 102 (2.68%)
Lysine (Lys, K)
n = 85 (2.24%)
Arginine (Arg, R)
n = 70 (1.84%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
59 234 98 42 193 317 77 26 84 16 25 69 69 33 33 184
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
57 6 29 35 186 108 7 26 80 68 51 31 92 98 6 32
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
151 111 8 35 96 84 8 3 54 15 98 6 10 20 109 15
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
87 61 28 12 55 79 6 7 21 35 7 2 1 4 3 101
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
913 1128 1024 738
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
497 1088 692 1526
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
324 1738 1345 396 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​F​i​c​e​d​u​l​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ a​l​b​i​c​o​l​l​i​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.