Viewing data for Thraupis episcopus


Scientific name Thraupis episcopus
Common name Blue-grey tanager
Maximum lifespan 9.50 years (Thraupis episcopus@AnAge)

Total mtDNA (size: 16757 bases) GC AT G C A T
Base content (bases) 7863 8893 5423 2440 3915 4978
Base content per 1 kb (bases) 469 531 324 146 234 297
Base content (%) 46.9% 53.1%
Total protein-coding genes (size: 11378 bases) GC AT G C A T
Base content (bases) 5468 5910 3970 1498 2644 3266
Base content per 1 kb (bases) 481 519 349 132 232 287
Base content (%) 48.1% 51.9%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1540 bases) GC AT G C A T
Base content (bases) 641 899 373 268 399 500
Base content per 1 kb (bases) 416 584 242 174 259 325
Base content (%) 41.6% 58.4%
Total rRNA-coding genes (size: 2574 bases) GC AT G C A T
Base content (bases) 1189 1384 673 516 537 847
Base content per 1 kb (bases) 462 538 261 200 209 329
Base content (%) 46.2% 53.8%
12S rRNA gene (size: 977 bases) GC AT G C A T
Base content (bases) 476 500 272 204 200 300
Base content per 1 kb (bases) 487 512 278 209 205 307
Base content (%) 48.7% 51.2%
16S rRNA gene (size: 1597 bases) GC AT G C A T
Base content (bases) 713 884 401 312 337 547
Base content per 1 kb (bases) 446 554 251 195 211 343
Base content (%) 44.6% 55.4%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 324 360 249 75 160 200
Base content per 1 kb (bases) 474 526 364 110 234 292
Base content (%) 47.4% 52.6%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 77 91 64 13 41 50
Base content per 1 kb (bases) 458 542 381 77 244 298
Base content (%) 45.8% 54.2%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 752 799 485 267 388 411
Base content per 1 kb (bases) 485 515 313 172 250 265
Base content (%) 48.5% 51.5%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 320 364 223 97 156 208
Base content per 1 kb (bases) 468 532 326 142 228 304
Base content (%) 46.8% 53.2%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 383 401 261 122 187 214
Base content per 1 kb (bases) 489 511 333 156 239 273
Base content (%) 48.9% 51.1%
CYTB (size: 1143 bases) GC AT G C A T
Base content (bases) 554 589 403 151 280 309
Base content per 1 kb (bases) 485 515 353 132 245 270
Base content (%) 48.5% 51.5%
ND1 (size: 978 bases) GC AT G C A T
Base content (bases) 464 514 321 143 256 258
Base content per 1 kb (bases) 474 526 328 146 262 264
Base content (%) 47.4% 52.6%
ND2 (size: 1040 bases) GC AT G C A T
Base content (bases) 494 546 371 123 256 290
Base content per 1 kb (bases) 475 525 357 118 246 279
Base content (%) 47.5% 52.5%
ND3 (size: 351 bases) GC AT G C A T
Base content (bases) 160 191 122 38 86 105
Base content per 1 kb (bases) 456 544 348 108 245 299
Base content (%) 45.6% 54.4%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 665 713 507 158 311 402
Base content per 1 kb (bases) 483 517 368 115 226 292
Base content (%) 48.3% 51.7%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 146 151 107 39 68 83
Base content per 1 kb (bases) 492 508 360 131 229 279
Base content (%) 49.2% 50.8%
ND5 (size: 1818 bases) GC AT G C A T
Base content (bases) 861 957 642 219 405 552
Base content per 1 kb (bases) 474 526 353 120 223 304
Base content (%) 47.4% 52.6%
ND6 (size: 519 bases) GC AT G C A T
Base content (bases) 272 247 217 55 54 193
Base content per 1 kb (bases) 524 476 418 106 104 372
Base content (%) 52.4% 47.6%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (3.08%)
Alanine (Ala, A)
n = 16 (7.05%)
Serine (Ser, S)
n = 15 (6.61%)
Threonine (Thr, T)
n = 24 (10.57%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (4.41%)
Leucine (Leu, L)
n = 62 (27.31%)
Isoleucine (Ile, I)
n = 16 (7.05%)
Methionine (Met, M)
n = 9 (3.96%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 11 (4.85%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 3 (1.32%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 11 7 6 15 34 5 2 7 1 0 5 3 2 2 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 1 12 3 0 0 3 4 0 0 4 9 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 13 2 2 6 3 0 0 4 1 2 1 0 0 9 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 4 0 0 3 3 1 0 2 3 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
40 90 66 32
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
20 65 35 108
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 94 99 20
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPNPWFFIMLTSWLTFSLIIQPKLLSFVSMNPPSSKPPIAPSTTPWTWPWT*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.82%)
Serine (Ser, S)
n = 7 (12.73%)
Threonine (Thr, T)
n = 6 (10.91%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.82%)
Leucine (Leu, L)
n = 6 (10.91%)
Isoleucine (Ile, I)
n = 4 (7.27%)
Methionine (Met, M)
n = 3 (5.45%)
Proline (Pro, P)
n = 11 (20.0%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 4 1 0 3 2 1 0 2 0 0 0 1 0 2 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 1 0 0 0 0 0 0 1 5 5 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 1 0 1 1 3 0 1 1 0 0 0 0 1 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
2 19 20 15
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
7 23 8 18
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 22 22 8
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 45 (8.72%)
Serine (Ser, S)
n = 29 (5.62%)
Threonine (Thr, T)
n = 40 (7.75%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 38 (7.36%)
Leucine (Leu, L)
n = 63 (12.21%)
Isoleucine (Ile, I)
n = 39 (7.56%)
Methionine (Met, M)
n = 23 (4.46%)
Proline (Pro, P)
n = 30 (5.81%)
Phenylalanine (Phe, F)
n = 43 (8.33%)
Tyrosine (Tyr, Y)
n = 17 (3.29%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 14 (2.71%)
Glutamine (Gln, Q)
n = 9 (1.74%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 24 15 8 10 29 11 5 9 0 6 15 16 1 5 38
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 0 1 10 23 12 0 2 17 20 8 7 6 15 2 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 17 2 4 12 9 0 0 4 1 16 0 0 0 14 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 9 1 0 15 9 0 1 1 6 0 0 1 0 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
155 124 130 108
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 140 93 206
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
34 221 188 74
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.96%)
Alanine (Ala, A)
n = 14 (6.17%)
Serine (Ser, S)
n = 18 (7.93%)
Threonine (Thr, T)
n = 18 (7.93%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 17 (7.49%)
Leucine (Leu, L)
n = 30 (13.22%)
Isoleucine (Ile, I)
n = 16 (7.05%)
Methionine (Met, M)
n = 11 (4.85%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 8 (3.52%)
Tyrosine (Tyr, Y)
n = 7 (3.08%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 14 (6.17%)
Glutamic acid (Glu, E)
n = 10 (4.41%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 6 (2.64%)
Histidine (His, H)
n = 9 (3.96%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 14 9 5 6 18 0 1 5 1 3 8 5 1 0 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 3 4 6 4 0 1 2 5 1 3 3 8 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 8 1 2 8 6 0 1 1 2 5 0 0 1 7 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 9 1 4 10 4 0 0 3 2 1 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 64 59 41
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 62 59 82
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 97 90 33
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 23 (8.85%)
Serine (Ser, S)
n = 17 (6.54%)
Threonine (Thr, T)
n = 19 (7.31%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 15 (5.77%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 16 (6.15%)
Methionine (Met, M)
n = 7 (2.69%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 15 (5.77%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 6 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 13 6 0 13 16 3 2 8 1 4 3 8 0 2 21
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 8 9 6 0 0 9 9 2 1 6 6 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 10 1 3 3 7 0 0 4 1 10 0 0 0 5 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 7 1 1 3 3 0 1 0 5 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 75 54 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 68 55 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 118 105 29
CYTB (size: 1143 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.32%)
Alanine (Ala, A)
n = 26 (6.84%)
Serine (Ser, S)
n = 22 (5.79%)
Threonine (Thr, T)
n = 24 (6.32%)
Cysteine (Cys, C)
n = 4 (1.05%)
Valine (Val, V)
n = 25 (6.58%)
Leucine (Leu, L)
n = 64 (16.84%)
Isoleucine (Ile, I)
n = 33 (8.68%)
Methionine (Met, M)
n = 9 (2.37%)
Proline (Pro, P)
n = 23 (6.05%)
Phenylalanine (Phe, F)
n = 29 (7.63%)
Tyrosine (Tyr, Y)
n = 13 (3.42%)
Tryptophan (Trp, W)
n = 11 (2.89%)
Aspartic acid (Asp, D)
n = 9 (2.37%)
Glutamic acid (Glu, E)
n = 7 (1.84%)
Asparagine (Asn, N)
n = 19 (5.0%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 12 (3.16%)
Lysine (Lys, K)
n = 10 (2.63%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 30 6 5 20 32 4 3 8 0 2 16 6 1 4 25
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 4 6 15 4 1 2 13 9 0 3 8 12 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 8 1 2 5 14 0 0 1 1 12 0 0 2 17 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 7 0 0 9 9 1 1 2 5 0 0 0 0 1 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
91 112 96 82
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
48 94 79 160
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 197 134 38
ND1 (size: 978 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (4.0%)
Alanine (Ala, A)
n = 31 (9.54%)
Serine (Ser, S)
n = 26 (8.0%)
Threonine (Thr, T)
n = 19 (5.85%)
Cysteine (Cys, C)
n = 3 (0.92%)
Valine (Val, V)
n = 14 (4.31%)
Leucine (Leu, L)
n = 64 (19.69%)
Isoleucine (Ile, I)
n = 24 (7.38%)
Methionine (Met, M)
n = 12 (3.69%)
Proline (Pro, P)
n = 25 (7.69%)
Phenylalanine (Phe, F)
n = 20 (6.15%)
Tyrosine (Tyr, Y)
n = 15 (4.62%)
Tryptophan (Trp, W)
n = 8 (2.46%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.38%)
Asparagine (Asn, N)
n = 13 (4.0%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 2 (0.62%)
Lysine (Lys, K)
n = 7 (2.15%)
Arginine (Arg, R)
n = 8 (2.46%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 16 10 4 19 28 4 7 3 3 2 3 8 1 6 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 3 5 12 11 3 2 5 4 2 7 6 10 2 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 5 2 2 9 8 0 0 7 4 11 2 2 1 12 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 6 5 2 2 6 1 2 1 4 1 1 0 0 0 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 96 83 74
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 94 58 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
30 131 117 48
ND2 (size: 1040 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.77%)
Alanine (Ala, A)
n = 31 (8.99%)
Serine (Ser, S)
n = 28 (8.12%)
Threonine (Thr, T)
n = 41 (11.88%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 11 (3.19%)
Leucine (Leu, L)
n = 67 (19.42%)
Isoleucine (Ile, I)
n = 33 (9.57%)
Methionine (Met, M)
n = 16 (4.64%)
Proline (Pro, P)
n = 21 (6.09%)
Phenylalanine (Phe, F)
n = 12 (3.48%)
Tyrosine (Tyr, Y)
n = 7 (2.03%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 11 (3.19%)
Glutamine (Gln, Q)
n = 11 (3.19%)
Histidine (His, H)
n = 9 (2.61%)
Lysine (Lys, K)
n = 13 (3.77%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 23 11 8 27 20 5 5 7 4 0 6 3 2 3 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 1 7 12 11 1 1 6 6 0 5 5 10 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
20 12 1 4 13 5 1 1 4 1 6 2 2 3 8 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 3 1 1 1 10 3 2 0 2 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
61 105 119 61
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 116 57 139
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
28 150 113 55
ND3 (size: 1040 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.77%)
Alanine (Ala, A)
n = 31 (8.99%)
Serine (Ser, S)
n = 28 (8.12%)
Threonine (Thr, T)
n = 41 (11.88%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 11 (3.19%)
Leucine (Leu, L)
n = 67 (19.42%)
Isoleucine (Ile, I)
n = 33 (9.57%)
Methionine (Met, M)
n = 16 (4.64%)
Proline (Pro, P)
n = 21 (6.09%)
Phenylalanine (Phe, F)
n = 12 (3.48%)
Tyrosine (Tyr, Y)
n = 7 (2.03%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 11 (3.19%)
Glutamine (Gln, Q)
n = 11 (3.19%)
Histidine (His, H)
n = 9 (2.61%)
Lysine (Lys, K)
n = 13 (3.77%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 23 11 8 27 20 5 5 7 4 0 6 3 2 3 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 1 7 12 11 1 1 6 6 0 5 5 10 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
20 12 1 4 13 5 1 1 4 1 6 2 2 3 8 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 3 1 1 1 10 3 2 0 2 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
61 105 119 61
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 116 57 139
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
28 150 113 55
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 44 (9.61%)
Serine (Ser, S)
n = 39 (8.52%)
Threonine (Thr, T)
n = 40 (8.73%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 9 (1.97%)
Leucine (Leu, L)
n = 98 (21.4%)
Isoleucine (Ile, I)
n = 41 (8.95%)
Methionine (Met, M)
n = 24 (5.24%)
Proline (Pro, P)
n = 27 (5.9%)
Phenylalanine (Phe, F)
n = 13 (2.84%)
Tyrosine (Tyr, Y)
n = 14 (3.06%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 10 (2.18%)
Asparagine (Asn, N)
n = 16 (3.49%)
Glutamine (Gln, Q)
n = 13 (2.84%)
Histidine (His, H)
n = 14 (3.06%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 12 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 30 17 10 30 47 3 8 12 1 1 3 5 0 1 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 3 7 25 12 0 0 10 6 1 1 14 11 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 17 2 4 12 12 2 0 9 1 13 0 0 2 14 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 6 4 1 2 9 1 1 3 8 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
83 156 140 80
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 141 80 185
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 210 182 45
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 10 (10.2%)
Serine (Ser, S)
n = 13 (13.27%)
Threonine (Thr, T)
n = 9 (9.18%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 20 (20.41%)
Isoleucine (Ile, I)
n = 4 (4.08%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 3 (3.06%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 6 (6.12%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 3 5 1 2 14 2 0 3 0 1 0 1 0 1 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 2 0 8 2 0 0 2 1 1 0 1 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 3 0 1 3 5 0 0 4 0 3 0 1 0 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 2 0 0 1 0 0 0 0 1 1 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
19 32 25 23
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 30 18 37
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 45 40 8
ND5 (size: 1818 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 35 (5.79%)
Alanine (Ala, A)
n = 50 (8.26%)
Serine (Ser, S)
n = 51 (8.43%)
Threonine (Thr, T)
n = 69 (11.4%)
Cysteine (Cys, C)
n = 6 (0.99%)
Valine (Val, V)
n = 20 (3.31%)
Leucine (Leu, L)
n = 102 (16.86%)
Isoleucine (Ile, I)
n = 52 (8.6%)
Methionine (Met, M)
n = 26 (4.3%)
Proline (Pro, P)
n = 30 (4.96%)
Phenylalanine (Phe, F)
n = 37 (6.12%)
Tyrosine (Tyr, Y)
n = 13 (2.15%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 9 (1.49%)
Glutamic acid (Glu, E)
n = 12 (1.98%)
Asparagine (Asn, N)
n = 24 (3.97%)
Glutamine (Gln, Q)
n = 17 (2.81%)
Histidine (His, H)
n = 12 (1.98%)
Lysine (Lys, K)
n = 20 (3.31%)
Arginine (Arg, R)
n = 8 (1.32%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 37 22 6 33 57 6 0 16 1 2 7 10 1 3 34
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 6 5 27 16 2 2 11 21 1 4 18 7 1 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
28 29 0 4 22 11 1 0 13 2 11 0 0 5 19 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 12 0 0 9 19 1 0 1 7 0 1 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
126 169 205 106
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
75 187 107 237
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 286 240 62
ND6 (size: 519 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 31 (18.02%)
Alanine (Ala, A)
n = 12 (6.98%)
Serine (Ser, S)
n = 14 (8.14%)
Threonine (Thr, T)
n = 2 (1.16%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 33 (19.19%)
Leucine (Leu, L)
n = 32 (18.6%)
Isoleucine (Ile, I)
n = 2 (1.16%)
Methionine (Met, M)
n = 7 (4.07%)
Proline (Pro, P)
n = 4 (2.33%)
Phenylalanine (Phe, F)
n = 8 (4.65%)
Tyrosine (Tyr, Y)
n = 7 (4.07%)
Tryptophan (Trp, W)
n = 4 (2.33%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 6 (3.49%)
Asparagine (Asn, N)
n = 2 (1.16%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 4 (2.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 2 5 0 3 5 3 0 0 12 1 3 17 8 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 2 0 3 0 3 6 8 0 1 22 2 1 0 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 1 4 2 1 3 4 0 6 1 3 16 1 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 5 2 0 0 0 0 0 0 4 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
84 21 17 51
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
45 28 18 82
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
88 6 19 60
Total protein-coding genes (size: 11395 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 225 (5.93%)
Alanine (Ala, A)
n = 310 (8.17%)
Serine (Ser, S)
n = 287 (7.56%)
Threonine (Thr, T)
n = 320 (8.43%)
Cysteine (Cys, C)
n = 29 (0.76%)
Valine (Val, V)
n = 197 (5.19%)
Leucine (Leu, L)
n = 671 (17.68%)
Isoleucine (Ile, I)
n = 288 (7.59%)
Methionine (Met, M)
n = 158 (4.16%)
Proline (Pro, P)
n = 221 (5.82%)
Phenylalanine (Phe, F)
n = 222 (5.85%)
Tyrosine (Tyr, Y)
n = 112 (2.95%)
Tryptophan (Trp, W)
n = 106 (2.79%)
Aspartic acid (Asp, D)
n = 69 (1.82%)
Glutamic acid (Glu, E)
n = 90 (2.37%)
Asparagine (Asn, N)
n = 129 (3.4%)
Glutamine (Gln, Q)
n = 96 (2.53%)
Histidine (His, H)
n = 101 (2.66%)
Lysine (Lys, K)
n = 83 (2.19%)
Arginine (Arg, R)
n = 73 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
75 213 116 59 184 322 49 36 84 12 33 68 70 26 41 181
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
42 4 25 57 154 86 13 18 79 90 38 34 80 98 9 51
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
133 123 13 34 99 87 7 7 53 20 92 9 21 16 113 20
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
81 72 18 11 58 74 9 8 14 44 7 2 1 6 1 97
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
891 1105 1041 760
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
496 1078 687 1536
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
275 1627 1407 488 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​T​h​r​a​u​p​i​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ e​p​i​s​c​o​p​u​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.