Scientific name | Orcinus orca |
Common name | Killer whale |
Maximum lifespan | 90.00 years (Orcinus orca@AnAge) |
Total mtDNA (size: 16386 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 6505 | 9880 | 4399 | 2106 | 4496 | 5384 |
Base content per 1 kb (bases) | 397 | 603 | 268 | 129 | 274 | 329 |
Base content (%) | 39.7% | 60.3% |
Total protein-coding genes (size: 11346 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 4547 | 6798 | 3270 | 1277 | 3165 | 3633 |
Base content per 1 kb (bases) | 401 | 599 | 288 | 113 | 279 | 320 |
Base content (%) | 40.1% | 59.9% |
D-loop (size: 914 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 346 | 568 | 223 | 123 | 299 | 269 |
Base content per 1 kb (bases) | 379 | 621 | 244 | 135 | 327 | 294 |
Base content (%) | 37.9% | 62.1% |
Total tRNA-coding genes (size: 1518 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 568 | 950 | 330 | 238 | 413 | 537 |
Base content per 1 kb (bases) | 374 | 626 | 217 | 157 | 272 | 354 |
Base content (%) | 37.4% | 62.6% |
Total rRNA-coding genes (size: 2549 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 1015 | 1534 | 557 | 458 | 607 | 927 |
Base content per 1 kb (bases) | 398 | 602 | 219 | 180 | 238 | 364 |
Base content (%) | 39.8% | 60.2% |
12S rRNA gene (size: 974 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 410 | 564 | 227 | 183 | 217 | 347 |
Base content per 1 kb (bases) | 421 | 579 | 233 | 188 | 223 | 356 |
Base content (%) | 42.1% | 57.9% |
16S rRNA gene (size: 1575 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 605 | 970 | 330 | 275 | 390 | 580 |
Base content per 1 kb (bases) | 384 | 616 | 210 | 175 | 248 | 368 |
Base content (%) | 38.4% | 61.6% |
ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 265 | 416 | 198 | 67 | 201 | 215 |
Base content per 1 kb (bases) | 389 | 611 | 291 | 98 | 295 | 316 |
Base content (%) | 38.9% | 61.1% |
ATP8 (size: 192 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 72 | 120 | 61 | 11 | 50 | 70 |
Base content per 1 kb (bases) | 375 | 625 | 318 | 57 | 260 | 365 |
Base content (%) | 37.5% | 62.5% |
COX1 (size: 1551 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 616 | 934 | 366 | 250 | 486 | 448 |
Base content per 1 kb (bases) | 397 | 602 | 236 | 161 | 313 | 289 |
Base content (%) | 39.7% | 60.2% |
COX2 (size: 684 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 276 | 408 | 184 | 92 | 178 | 230 |
Base content per 1 kb (bases) | 404 | 596 | 269 | 135 | 260 | 336 |
Base content (%) | 40.4% | 59.6% |
COX3 (size: 785 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 338 | 447 | 231 | 107 | 230 | 217 |
Base content per 1 kb (bases) | 431 | 569 | 294 | 136 | 293 | 276 |
Base content (%) | 43.1% | 56.9% |
CYTB (size: 1140 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 489 | 651 | 345 | 144 | 304 | 347 |
Base content per 1 kb (bases) | 429 | 571 | 303 | 126 | 267 | 304 |
Base content (%) | 42.9% | 57.1% |
ND1 (size: 957 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 392 | 565 | 284 | 108 | 256 | 309 |
Base content per 1 kb (bases) | 410 | 590 | 297 | 113 | 268 | 323 |
Base content (%) | 41.0% | 59.0% |
ND2 (size: 1042 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 400 | 642 | 327 | 73 | 270 | 372 |
Base content per 1 kb (bases) | 384 | 616 | 314 | 70 | 259 | 357 |
Base content (%) | 38.4% | 61.6% |
ND3 (size: 346 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 139 | 207 | 103 | 36 | 98 | 109 |
Base content per 1 kb (bases) | 402 | 598 | 298 | 104 | 283 | 315 |
Base content (%) | 40.2% | 59.8% |
ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 538 | 840 | 397 | 141 | 406 | 434 |
Base content per 1 kb (bases) | 390 | 610 | 288 | 102 | 295 | 315 |
Base content (%) | 39.0% | 61.0% |
ND4L (size: 297 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 121 | 176 | 87 | 34 | 86 | 90 |
Base content per 1 kb (bases) | 407 | 593 | 293 | 114 | 290 | 303 |
Base content (%) | 40.7% | 59.3% |
ND5 (size: 1821 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 720 | 1101 | 540 | 180 | 509 | 592 |
Base content per 1 kb (bases) | 395 | 605 | 297 | 99 | 280 | 325 |
Base content (%) | 39.5% | 60.5% |
ND6 (size: 528 bases) | GC | AT | G | C | A | T |
---|---|---|---|---|---|---|
Base content (bases) | 196 | 332 | 158 | 38 | 109 | 223 |
Base content per 1 kb (bases) | 371 | 629 | 299 | 72 | 206 | 422 |
Base content (%) | 37.1% | 62.9% |
ATP6 (size: 681 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
10 | 14 | 9 | 7 | 7 | 18 | 2 | 11 | 8 | 0 | 1 | 1 | 7 | 0 | 6 | 8 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 0 | 0 | 6 | 4 | 5 | 0 | 1 | 6 | 3 | 0 | 3 | 6 | 3 | 1 | 7 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
8 | 13 | 0 | 3 | 2 | 3 | 0 | 2 | 2 | 0 | 2 | 0 | 1 | 6 | 5 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
4 | 2 | 0 | 0 | 1 | 5 | 1 | 2 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 3 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
37 | 64 | 86 | 40 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
21 | 64 | 36 | 106 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
9 | 70 | 93 | 55 |
ATP8 (size: 192 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: MPQLDTSTWPLTILSMIFTLFALLQLKISKHFYSPSPKPADTKLQKQQTPWNCMWTKIYLPLS* | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
2 | 2 | 2 | 3 | 1 | 4 | 0 | 2 | 5 | 0 | 0 | 0 | 0 | 0 | 1 | 2 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 1 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 2 | 3 | 2 | 0 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
3 | 3 | 0 | 1 | 2 | 3 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
1 | 0 | 0 | 1 | 1 | 5 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 2 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
4 | 21 | 21 | 18 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
4 | 22 | 18 | 20 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
3 | 18 | 31 | 12 |
COX1 (size: 1551 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
24 | 16 | 27 | 10 | 4 | 25 | 3 | 16 | 6 | 1 | 9 | 7 | 17 | 2 | 16 | 27 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 1 | 0 | 14 | 8 | 13 | 3 | 12 | 10 | 18 | 8 | 12 | 6 | 10 | 1 | 9 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
7 | 22 | 0 | 7 | 4 | 15 | 1 | 1 | 2 | 14 | 5 | 0 | 3 | 8 | 11 | 7 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
10 | 7 | 1 | 3 | 12 | 10 | 0 | 2 | 1 | 5 | 0 | 1 | 0 | 0 | 0 | 17 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
144 | 103 | 143 | 126 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
78 | 132 | 95 | 211 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
28 | 130 | 209 | 149 |
COX2 (size: 684 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
8 | 9 | 10 | 4 | 3 | 18 | 2 | 7 | 8 | 0 | 4 | 2 | 5 | 0 | 4 | 3 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
5 | 2 | 0 | 2 | 3 | 6 | 0 | 1 | 5 | 2 | 0 | 5 | 4 | 5 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
6 | 8 | 1 | 1 | 6 | 7 | 0 | 1 | 4 | 5 | 4 | 0 | 1 | 4 | 3 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
6 | 11 | 3 | 3 | 7 | 5 | 0 | 0 | 1 | 5 | 0 | 0 | 0 | 1 | 0 | 5 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
54 | 61 | 67 | 46 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
26 | 57 | 60 | 85 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
12 | 66 | 103 | 47 |
COX3 (size: 785 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
3 | 13 | 10 | 6 | 11 | 8 | 1 | 8 | 6 | 1 | 1 | 4 | 9 | 0 | 9 | 15 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
2 | 0 | 1 | 6 | 4 | 1 | 0 | 5 | 9 | 5 | 1 | 3 | 3 | 6 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
8 | 10 | 1 | 2 | 4 | 10 | 1 | 2 | 3 | 7 | 4 | 0 | 0 | 1 | 4 | 5 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
12 | 8 | 0 | 0 | 4 | 2 | 0 | 1 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
57 | 67 | 64 | 73 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
43 | 64 | 54 | 100 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
7 | 100 | 98 | 56 |
CYTB (size: 1140 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
6 | 28 | 11 | 5 | 12 | 33 | 4 | 11 | 7 | 1 | 4 | 4 | 7 | 1 | 9 | 16 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
3 | 1 | 2 | 2 | 6 | 18 | 0 | 4 | 10 | 10 | 0 | 6 | 5 | 12 | 0 | 3 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
13 | 15 | 0 | 6 | 6 | 6 | 0 | 0 | 4 | 8 | 7 | 0 | 0 | 6 | 10 | 1 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
11 | 5 | 1 | 3 | 7 | 9 | 0 | 2 | 1 | 5 | 0 | 1 | 0 | 0 | 0 | 12 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
82 | 105 | 109 | 84 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
52 | 98 | 76 | 154 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
10 | 142 | 162 | 66 |
ND1 (size: 957 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
7 | 15 | 19 | 5 | 10 | 30 | 3 | 9 | 6 | 1 | 1 | 0 | 9 | 1 | 8 | 13 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 2 | 6 | 9 | 12 | 0 | 3 | 3 | 6 | 0 | 1 | 12 | 9 | 0 | 8 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
5 | 16 | 1 | 4 | 7 | 6 | 2 | 1 | 1 | 6 | 5 | 0 | 0 | 2 | 12 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
2 | 9 | 2 | 1 | 2 | 8 | 0 | 0 | 1 | 7 | 0 | 0 | 0 | 1 | 0 | 9 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
64 | 87 | 96 | 72 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
33 | 98 | 57 | 131 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
11 | 99 | 156 | 53 |
ND2 (size: 1042 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
19 | 17 | 30 | 7 | 14 | 32 | 2 | 5 | 12 | 0 | 1 | 2 | 2 | 1 | 3 | 13 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
0 | 0 | 0 | 2 | 9 | 6 | 0 | 2 | 2 | 8 | 0 | 5 | 7 | 9 | 1 | 10 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
15 | 26 | 0 | 3 | 10 | 9 | 0 | 0 | 4 | 2 | 7 | 0 | 0 | 2 | 12 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 4 | 0 | 0 | 1 | 12 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
40 | 98 | 147 | 62 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
29 | 112 | 58 | 148 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
4 | 117 | 167 | 59 |
ND3 (size: 1042 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
19 | 17 | 30 | 7 | 14 | 32 | 2 | 5 | 12 | 0 | 1 | 2 | 2 | 1 | 3 | 13 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
0 | 0 | 0 | 2 | 9 | 6 | 0 | 2 | 2 | 8 | 0 | 5 | 7 | 9 | 1 | 10 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
15 | 26 | 0 | 3 | 10 | 9 | 0 | 0 | 4 | 2 | 7 | 0 | 0 | 2 | 12 | 3 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
3 | 4 | 0 | 0 | 1 | 12 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
40 | 98 | 147 | 62 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
29 | 112 | 58 | 148 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
4 | 117 | 167 | 59 |
ND4 (size: 1378 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
16 | 22 | 25 | 17 | 19 | 38 | 3 | 18 | 11 | 0 | 0 | 4 | 9 | 0 | 10 | 10 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
7 | 2 | 2 | 5 | 12 | 13 | 0 | 1 | 6 | 9 | 1 | 9 | 9 | 4 | 0 | 13 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
12 | 19 | 0 | 6 | 8 | 11 | 0 | 6 | 4 | 6 | 9 | 0 | 2 | 7 | 14 | 7 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
7 | 8 | 1 | 1 | 2 | 10 | 1 | 2 | 2 | 6 | 0 | 0 | 0 | 0 | 0 | 13 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
72 | 134 | 156 | 97 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
54 | 121 | 84 | 200 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
15 | 142 | 194 | 108 |
ND4L (size: 297 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
5 | 3 | 7 | 2 | 4 | 11 | 0 | 6 | 2 | 0 | 0 | 3 | 3 | 0 | 1 | 3 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
1 | 0 | 3 | 1 | 4 | 4 | 1 | 1 | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 1 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
2 | 4 | 0 | 0 | 5 | 1 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 2 | 3 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
4 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
23 | 25 | 29 | 22 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
9 | 24 | 17 | 49 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
2 | 38 | 44 | 15 |
ND5 (size: 1821 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
18 | 31 | 34 | 16 | 22 | 45 | 2 | 17 | 16 | 2 | 2 | 4 | 7 | 0 | 17 | 27 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
4 | 3 | 1 | 11 | 16 | 8 | 0 | 3 | 6 | 16 | 0 | 5 | 16 | 8 | 0 | 9 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
25 | 32 | 3 | 13 | 8 | 12 | 1 | 2 | 11 | 6 | 11 | 2 | 1 | 14 | 17 | 6 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
11 | 10 | 2 | 5 | 6 | 19 | 5 | 2 | 4 | 2 | 0 | 0 | 0 | 1 | 0 | 10 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
96 | 157 | 224 | 130 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
62 | 167 | 131 | 247 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
22 | 216 | 237 | 132 |
ND6 (size: 528 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
11 | 0 | 4 | 1 | 0 | 1 | 0 | 10 | 1 | 0 | 15 | 0 | 4 | 10 | 15 | 0 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
6 | 1 | 0 | 6 | 0 | 0 | 1 | 10 | 2 | 7 | 8 | 2 | 0 | 1 | 0 | 5 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
0 | 2 | 1 | 4 | 0 | 3 | 0 | 3 | 2 | 9 | 0 | 3 | 6 | 4 | 0 | 0 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
0 | 0 | 8 | 1 | 2 | 2 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
74 | 7 | 42 | 53 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
38 | 25 | 30 | 83 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
46 | 6 | 37 | 87 |
Total protein-coding genes (size: 11402 bases) | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Amino acid sequence: | |||||||||||||||
Amino acid frequencies: |
|||||||||||||||
Codon statistics: | |||||||||||||||
AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
132 | 172 | 194 | 85 | 115 | 280 | 23 | 121 | 91 | 6 | 38 | 31 | 79 | 16 | 105 | 139 |
AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
39 | 11 | 12 | 61 | 81 | 92 | 5 | 43 | 63 | 86 | 18 | 54 | 75 | 71 | 3 | 78 |
ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
106 | 175 | 8 | 52 | 63 | 87 | 5 | 19 | 39 | 69 | 55 | 6 | 14 | 59 | 95 | 30 |
CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
71 | 70 | 19 | 19 | 47 | 91 | 10 | 11 | 13 | 38 | 1 | 2 | 0 | 7 | 0 | 98 |
Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
768 | 967 | 1219 | 844 | ||||||||||||
Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
460 | 1016 | 739 | 1583 | ||||||||||||
Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
173 | 1177 | 1582 | 866 |
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​O​r​c​i​n​u​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ o​r​c​a​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​