Viewing data for Orcinus orca
| Scientific name | Orcinus orca |
| Common name | Killer whale |
| Maximum lifespan | 90.00 years (Orcinus orca@AnAge) |
| Total mtDNA (size: 16386 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 6505 | 9880 | 4399 | 2106 | 4496 | 5384 |
| Base content per 1 kb (bases) | 397 | 603 | 268 | 129 | 274 | 329 |
| Base content (%) | 39.7% | 60.3% | ||||
| Total protein-coding genes (size: 11346 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 4547 | 6798 | 3270 | 1277 | 3165 | 3633 |
| Base content per 1 kb (bases) | 401 | 599 | 288 | 113 | 279 | 320 |
| Base content (%) | 40.1% | 59.9% | ||||
| D-loop (size: 914 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 346 | 568 | 223 | 123 | 299 | 269 |
| Base content per 1 kb (bases) | 379 | 621 | 244 | 135 | 327 | 294 |
| Base content (%) | 37.9% | 62.1% | ||||
| Total tRNA-coding genes (size: 1518 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 568 | 950 | 330 | 238 | 413 | 537 |
| Base content per 1 kb (bases) | 374 | 626 | 217 | 157 | 272 | 354 |
| Base content (%) | 37.4% | 62.6% | ||||
| Total rRNA-coding genes (size: 2549 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1015 | 1534 | 557 | 458 | 607 | 927 |
| Base content per 1 kb (bases) | 398 | 602 | 219 | 180 | 238 | 364 |
| Base content (%) | 39.8% | 60.2% | ||||
| 12S rRNA gene (size: 974 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 410 | 564 | 227 | 183 | 217 | 347 |
| Base content per 1 kb (bases) | 421 | 579 | 233 | 188 | 223 | 356 |
| Base content (%) | 42.1% | 57.9% | ||||
| 16S rRNA gene (size: 1575 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 605 | 970 | 330 | 275 | 390 | 580 |
| Base content per 1 kb (bases) | 384 | 616 | 210 | 175 | 248 | 368 |
| Base content (%) | 38.4% | 61.6% | ||||
| ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 265 | 416 | 198 | 67 | 201 | 215 |
| Base content per 1 kb (bases) | 389 | 611 | 291 | 98 | 295 | 316 |
| Base content (%) | 38.9% | 61.1% | ||||
| ATP8 (size: 192 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 72 | 120 | 61 | 11 | 50 | 70 |
| Base content per 1 kb (bases) | 375 | 625 | 318 | 57 | 260 | 365 |
| Base content (%) | 37.5% | 62.5% | ||||
| COX1 (size: 1551 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 616 | 934 | 366 | 250 | 486 | 448 |
| Base content per 1 kb (bases) | 397 | 602 | 236 | 161 | 313 | 289 |
| Base content (%) | 39.7% | 60.2% | ||||
| COX2 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 276 | 408 | 184 | 92 | 178 | 230 |
| Base content per 1 kb (bases) | 404 | 596 | 269 | 135 | 260 | 336 |
| Base content (%) | 40.4% | 59.6% | ||||
| COX3 (size: 785 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 338 | 447 | 231 | 107 | 230 | 217 |
| Base content per 1 kb (bases) | 431 | 569 | 294 | 136 | 293 | 276 |
| Base content (%) | 43.1% | 56.9% | ||||
| CYTB (size: 1140 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 489 | 651 | 345 | 144 | 304 | 347 |
| Base content per 1 kb (bases) | 429 | 571 | 303 | 126 | 267 | 304 |
| Base content (%) | 42.9% | 57.1% | ||||
| ND1 (size: 957 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 392 | 565 | 284 | 108 | 256 | 309 |
| Base content per 1 kb (bases) | 410 | 590 | 297 | 113 | 268 | 323 |
| Base content (%) | 41.0% | 59.0% | ||||
| ND2 (size: 1042 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 400 | 642 | 327 | 73 | 270 | 372 |
| Base content per 1 kb (bases) | 384 | 616 | 314 | 70 | 259 | 357 |
| Base content (%) | 38.4% | 61.6% | ||||
| ND3 (size: 346 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 139 | 207 | 103 | 36 | 98 | 109 |
| Base content per 1 kb (bases) | 402 | 598 | 298 | 104 | 283 | 315 |
| Base content (%) | 40.2% | 59.8% | ||||
| ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 538 | 840 | 397 | 141 | 406 | 434 |
| Base content per 1 kb (bases) | 390 | 610 | 288 | 102 | 295 | 315 |
| Base content (%) | 39.0% | 61.0% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 121 | 176 | 87 | 34 | 86 | 90 |
| Base content per 1 kb (bases) | 407 | 593 | 293 | 114 | 290 | 303 |
| Base content (%) | 40.7% | 59.3% | ||||
| ND5 (size: 1821 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 720 | 1101 | 540 | 180 | 509 | 592 |
| Base content per 1 kb (bases) | 395 | 605 | 297 | 99 | 280 | 325 |
| Base content (%) | 39.5% | 60.5% | ||||
| ND6 (size: 528 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 196 | 332 | 158 | 38 | 109 | 223 |
| Base content per 1 kb (bases) | 371 | 629 | 299 | 72 | 206 | 422 |
| Base content (%) | 37.1% | 62.9% | ||||
| ATP6 (size: 681 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.42%) 
Alanine (Ala, A)
n = 15 (6.64%) 
Serine (Ser, S)
n = 12 (5.31%) 
Threonine (Thr, T)
n = 28 (12.39%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 9 (3.98%) 
Leucine (Leu, L)
n = 46 (20.35%) 
Isoleucine (Ile, I)
n = 24 (10.62%) 
Methionine (Met, M)
n = 13 (5.75%) 
Proline (Pro, P)
n = 13 (5.75%) 
Phenylalanine (Phe, F)
n = 14 (6.19%) 
Tyrosine (Tyr, Y)
n = 2 (0.88%) 
Tryptophan (Trp, W)
n = 3 (1.33%) 
Aspartic acid (Asp, D)
n = 1 (0.44%) 
Glutamic acid (Glu, E)
n = 2 (0.88%) 
Asparagine (Asn, N)
n = 11 (4.87%) 
Glutamine (Gln, Q)
n = 8 (3.54%) 
Histidine (His, H)
n = 5 (2.21%) 
Lysine (Lys, K)
n = 6 (2.65%) 
Arginine (Arg, R)
n = 4 (1.77%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 14 | 9 | 7 | 7 | 18 | 2 | 11 | 8 | 0 | 1 | 1 | 7 | 0 | 6 | 8 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 0 | 6 | 4 | 5 | 0 | 1 | 6 | 3 | 0 | 3 | 6 | 3 | 1 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 8 | 13 | 0 | 3 | 2 | 3 | 0 | 2 | 2 | 0 | 2 | 0 | 1 | 6 | 5 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 2 | 0 | 0 | 1 | 5 | 1 | 2 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 37 | 64 | 86 | 40 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 21 | 64 | 36 | 106 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 9 | 70 | 93 | 55 | ||||||||||||
| ATP8 (size: 192 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLDTSTWPLTILSMIFTLFALLQLKISKHFYSPSPKPADTKLQKQQTPWNCMWTKIYLPLS* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 2 (3.17%)
Serine (Ser, S)
n = 6 (9.52%)
Threonine (Thr, T)
n = 7 (11.11%)
Cysteine (Cys, C)
n = 1 (1.59%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 10 (15.87%)
Isoleucine (Ile, I)
n = 4 (6.35%)
Methionine (Met, M)
n = 3 (4.76%)
Proline (Pro, P)
n = 7 (11.11%)
Phenylalanine (Phe, F)
n = 3 (4.76%)
Tyrosine (Tyr, Y)
n = 2 (3.17%)
Tryptophan (Trp, W)
n = 3 (4.76%)
Aspartic acid (Asp, D)
n = 2 (3.17%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 1 (1.59%)
Glutamine (Gln, Q)
n = 5 (7.94%)
Histidine (His, H)
n = 1 (1.59%)
Lysine (Lys, K)
n = 6 (9.52%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 2 | 2 | 2 | 3 | 1 | 4 | 0 | 2 | 5 | 0 | 0 | 0 | 0 | 0 | 1 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 1 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 2 | 3 | 2 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 3 | 3 | 0 | 1 | 2 | 3 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 0 | 0 | 1 | 1 | 5 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 2 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 4 | 21 | 21 | 18 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 4 | 22 | 18 | 20 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 3 | 18 | 31 | 12 | ||||||||||||
| COX1 (size: 1551 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 48 (9.3%)
Alanine (Ala, A)
n = 38 (7.36%)
Serine (Ser, S)
n = 30 (5.81%)
Threonine (Thr, T)
n = 38 (7.36%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 35 (6.78%)
Leucine (Leu, L)
n = 61 (11.82%)
Isoleucine (Ile, I)
n = 40 (7.75%)
Methionine (Met, M)
n = 32 (6.2%)
Proline (Pro, P)
n = 29 (5.62%)
Phenylalanine (Phe, F)
n = 43 (8.33%)
Tyrosine (Tyr, Y)
n = 19 (3.68%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 8 (1.55%)
Asparagine (Asn, N)
n = 19 (3.68%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 17 (3.29%)
Lysine (Lys, K)
n = 10 (1.94%)
Arginine (Arg, R)
n = 8 (1.55%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 24 | 16 | 27 | 10 | 4 | 25 | 3 | 16 | 6 | 1 | 9 | 7 | 17 | 2 | 16 | 27 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 1 | 0 | 14 | 8 | 13 | 3 | 12 | 10 | 18 | 8 | 12 | 6 | 10 | 1 | 9 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 22 | 0 | 7 | 4 | 15 | 1 | 1 | 2 | 14 | 5 | 0 | 3 | 8 | 11 | 7 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 7 | 1 | 3 | 12 | 10 | 0 | 2 | 1 | 5 | 0 | 1 | 0 | 0 | 0 | 17 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 144 | 103 | 143 | 126 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 78 | 132 | 95 | 211 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 28 | 130 | 209 | 149 | ||||||||||||
| COX2 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 11 (4.85%)
Serine (Ser, S)
n = 19 (8.37%)
Threonine (Thr, T)
n = 18 (7.93%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 11 (4.85%)
Leucine (Leu, L)
n = 35 (15.42%)
Isoleucine (Ile, I)
n = 17 (7.49%)
Methionine (Met, M)
n = 15 (6.61%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 7 (3.08%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 10 (4.41%)
Glutamic acid (Glu, E)
n = 14 (6.17%)
Asparagine (Asn, N)
n = 7 (3.08%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 6 (2.64%)
Lysine (Lys, K)
n = 5 (2.2%)
Arginine (Arg, R)
n = 6 (2.64%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 8 | 9 | 10 | 4 | 3 | 18 | 2 | 7 | 8 | 0 | 4 | 2 | 5 | 0 | 4 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 2 | 0 | 2 | 3 | 6 | 0 | 1 | 5 | 2 | 0 | 5 | 4 | 5 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 8 | 1 | 1 | 6 | 7 | 0 | 1 | 4 | 5 | 4 | 0 | 1 | 4 | 3 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 6 | 11 | 3 | 3 | 7 | 5 | 0 | 0 | 1 | 5 | 0 | 0 | 0 | 1 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 54 | 61 | 67 | 46 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 26 | 57 | 60 | 85 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 12 | 66 | 103 | 47 | ||||||||||||
| COX3 (size: 785 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 11 (4.23%)
Serine (Ser, S)
n = 22 (8.46%)
Threonine (Thr, T)
n = 24 (9.23%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 14 (5.38%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 16 (6.15%)
Methionine (Met, M)
n = 12 (4.62%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 24 (9.23%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 3 | 13 | 10 | 6 | 11 | 8 | 1 | 8 | 6 | 1 | 1 | 4 | 9 | 0 | 9 | 15 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 1 | 6 | 4 | 1 | 0 | 5 | 9 | 5 | 1 | 3 | 3 | 6 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 8 | 10 | 1 | 2 | 4 | 10 | 1 | 2 | 3 | 7 | 4 | 0 | 0 | 1 | 4 | 5 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 12 | 8 | 0 | 0 | 4 | 2 | 0 | 1 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 57 | 67 | 64 | 73 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 43 | 64 | 54 | 100 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 7 | 100 | 98 | 56 | ||||||||||||
| CYTB (size: 1140 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.33%)
Alanine (Ala, A)
n = 26 (6.86%)
Serine (Ser, S)
n = 22 (5.8%)
Threonine (Thr, T)
n = 31 (8.18%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 16 (4.22%)
Leucine (Leu, L)
n = 65 (17.15%)
Isoleucine (Ile, I)
n = 34 (8.97%)
Methionine (Met, M)
n = 14 (3.69%)
Proline (Pro, P)
n = 23 (6.07%)
Phenylalanine (Phe, F)
n = 25 (6.6%)
Tyrosine (Tyr, Y)
n = 15 (3.96%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 10 (2.64%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 16 (4.22%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 6 | 28 | 11 | 5 | 12 | 33 | 4 | 11 | 7 | 1 | 4 | 4 | 7 | 1 | 9 | 16 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 2 | 2 | 6 | 18 | 0 | 4 | 10 | 10 | 0 | 6 | 5 | 12 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 13 | 15 | 0 | 6 | 6 | 6 | 0 | 0 | 4 | 8 | 7 | 0 | 0 | 6 | 10 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 11 | 5 | 1 | 3 | 7 | 9 | 0 | 2 | 1 | 5 | 0 | 1 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 82 | 105 | 109 | 84 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 52 | 98 | 76 | 154 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 10 | 142 | 162 | 66 | ||||||||||||
| ND1 (size: 957 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.77%)
Alanine (Ala, A)
n = 27 (8.49%)
Serine (Ser, S)
n = 21 (6.6%)
Threonine (Thr, T)
n = 30 (9.43%)
Cysteine (Cys, C)
n = 2 (0.63%)
Valine (Val, V)
n = 11 (3.46%)
Leucine (Leu, L)
n = 57 (17.92%)
Isoleucine (Ile, I)
n = 22 (6.92%)
Methionine (Met, M)
n = 20 (6.29%)
Proline (Pro, P)
n = 22 (6.92%)
Phenylalanine (Phe, F)
n = 21 (6.6%)
Tyrosine (Tyr, Y)
n = 11 (3.46%)
Tryptophan (Trp, W)
n = 9 (2.83%)
Aspartic acid (Asp, D)
n = 3 (0.94%)
Glutamic acid (Glu, E)
n = 11 (3.46%)
Asparagine (Asn, N)
n = 14 (4.4%)
Glutamine (Gln, Q)
n = 7 (2.2%)
Histidine (His, H)
n = 2 (0.63%)
Lysine (Lys, K)
n = 8 (2.52%)
Arginine (Arg, R)
n = 8 (2.52%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 7 | 15 | 19 | 5 | 10 | 30 | 3 | 9 | 6 | 1 | 1 | 0 | 9 | 1 | 8 | 13 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 2 | 6 | 9 | 12 | 0 | 3 | 3 | 6 | 0 | 1 | 12 | 9 | 0 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 5 | 16 | 1 | 4 | 7 | 6 | 2 | 1 | 1 | 6 | 5 | 0 | 0 | 2 | 12 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 9 | 2 | 1 | 2 | 8 | 0 | 0 | 1 | 7 | 0 | 0 | 0 | 1 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 64 | 87 | 96 | 72 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 33 | 98 | 57 | 131 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 11 | 99 | 156 | 53 | ||||||||||||
| ND2 (size: 1042 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.47%)
Alanine (Ala, A)
n = 17 (4.91%)
Serine (Ser, S)
n = 26 (7.51%)
Threonine (Thr, T)
n = 51 (14.74%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 6 (1.73%)
Leucine (Leu, L)
n = 60 (17.34%)
Isoleucine (Ile, I)
n = 36 (10.4%)
Methionine (Met, M)
n = 30 (8.67%)
Proline (Pro, P)
n = 22 (6.36%)
Phenylalanine (Phe, F)
n = 16 (4.62%)
Tyrosine (Tyr, Y)
n = 9 (2.6%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 14 (4.05%)
Glutamine (Gln, Q)
n = 12 (3.47%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 12 (3.47%)
Arginine (Arg, R)
n = 3 (0.87%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 19 | 17 | 30 | 7 | 14 | 32 | 2 | 5 | 12 | 0 | 1 | 2 | 2 | 1 | 3 | 13 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 0 | 0 | 0 | 2 | 9 | 6 | 0 | 2 | 2 | 8 | 0 | 5 | 7 | 9 | 1 | 10 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 15 | 26 | 0 | 3 | 10 | 9 | 0 | 0 | 4 | 2 | 7 | 0 | 0 | 2 | 12 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 4 | 0 | 0 | 1 | 12 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 40 | 98 | 147 | 62 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 29 | 112 | 58 | 148 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 4 | 117 | 167 | 59 | ||||||||||||
| ND3 (size: 1042 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.47%)
Alanine (Ala, A)
n = 17 (4.91%)
Serine (Ser, S)
n = 26 (7.51%)
Threonine (Thr, T)
n = 51 (14.74%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 6 (1.73%)
Leucine (Leu, L)
n = 60 (17.34%)
Isoleucine (Ile, I)
n = 36 (10.4%)
Methionine (Met, M)
n = 30 (8.67%)
Proline (Pro, P)
n = 22 (6.36%)
Phenylalanine (Phe, F)
n = 16 (4.62%)
Tyrosine (Tyr, Y)
n = 9 (2.6%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 14 (4.05%)
Glutamine (Gln, Q)
n = 12 (3.47%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 12 (3.47%)
Arginine (Arg, R)
n = 3 (0.87%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 19 | 17 | 30 | 7 | 14 | 32 | 2 | 5 | 12 | 0 | 1 | 2 | 2 | 1 | 3 | 13 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 0 | 0 | 0 | 2 | 9 | 6 | 0 | 2 | 2 | 8 | 0 | 5 | 7 | 9 | 1 | 10 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 15 | 26 | 0 | 3 | 10 | 9 | 0 | 0 | 4 | 2 | 7 | 0 | 0 | 2 | 12 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 4 | 0 | 0 | 1 | 12 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 40 | 98 | 147 | 62 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 29 | 112 | 58 | 148 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 4 | 117 | 167 | 59 | ||||||||||||
| ND4 (size: 1378 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 30 (6.55%)
Serine (Ser, S)
n = 35 (7.64%)
Threonine (Thr, T)
n = 44 (9.61%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 13 (2.84%)
Leucine (Leu, L)
n = 97 (21.18%)
Isoleucine (Ile, I)
n = 38 (8.3%)
Methionine (Met, M)
n = 32 (6.99%)
Proline (Pro, P)
n = 22 (4.8%)
Phenylalanine (Phe, F)
n = 20 (4.37%)
Tyrosine (Tyr, Y)
n = 15 (3.28%)
Tryptophan (Trp, W)
n = 13 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 21 (4.59%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 14 (3.06%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 10 (2.18%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 16 | 22 | 25 | 17 | 19 | 38 | 3 | 18 | 11 | 0 | 0 | 4 | 9 | 0 | 10 | 10 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 7 | 2 | 2 | 5 | 12 | 13 | 0 | 1 | 6 | 9 | 1 | 9 | 9 | 4 | 0 | 13 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 12 | 19 | 0 | 6 | 8 | 11 | 0 | 6 | 4 | 6 | 9 | 0 | 2 | 7 | 14 | 7 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 7 | 8 | 1 | 1 | 2 | 10 | 1 | 2 | 2 | 6 | 0 | 0 | 0 | 0 | 0 | 13 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 72 | 134 | 156 | 97 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 54 | 121 | 84 | 200 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 15 | 142 | 194 | 108 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 10 (10.2%)
Serine (Ser, S)
n = 7 (7.14%)
Threonine (Thr, T)
n = 7 (7.14%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 6 (6.12%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 8 (8.16%)
Methionine (Met, M)
n = 8 (8.16%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 2 (2.04%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 5 (5.1%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 5 | 3 | 7 | 2 | 4 | 11 | 0 | 6 | 2 | 0 | 0 | 3 | 3 | 0 | 1 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 3 | 1 | 4 | 4 | 1 | 1 | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 2 | 4 | 0 | 0 | 5 | 1 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 2 | 3 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 23 | 25 | 29 | 22 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 9 | 24 | 17 | 49 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 2 | 38 | 44 | 15 | ||||||||||||
| ND5 (size: 1821 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 25 (4.13%)
Alanine (Ala, A)
n = 35 (5.78%)
Serine (Ser, S)
n = 47 (7.76%)
Threonine (Thr, T)
n = 69 (11.39%)
Cysteine (Cys, C)
n = 4 (0.66%)
Valine (Val, V)
n = 13 (2.15%)
Leucine (Leu, L)
n = 103 (17.0%)
Isoleucine (Ile, I)
n = 49 (8.09%)
Methionine (Met, M)
n = 38 (6.27%)
Proline (Pro, P)
n = 29 (4.79%)
Phenylalanine (Phe, F)
n = 44 (7.26%)
Tyrosine (Tyr, Y)
n = 17 (2.81%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 11 (1.82%)
Glutamic acid (Glu, E)
n = 12 (1.98%)
Asparagine (Asn, N)
n = 31 (5.12%)
Glutamine (Gln, Q)
n = 18 (2.97%)
Histidine (His, H)
n = 17 (2.81%)
Lysine (Lys, K)
n = 24 (3.96%)
Arginine (Arg, R)
n = 8 (1.32%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 18 | 31 | 34 | 16 | 22 | 45 | 2 | 17 | 16 | 2 | 2 | 4 | 7 | 0 | 17 | 27 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 3 | 1 | 11 | 16 | 8 | 0 | 3 | 6 | 16 | 0 | 5 | 16 | 8 | 0 | 9 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 25 | 32 | 3 | 13 | 8 | 12 | 1 | 2 | 11 | 6 | 11 | 2 | 1 | 14 | 17 | 6 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 11 | 10 | 2 | 5 | 6 | 19 | 5 | 2 | 4 | 2 | 0 | 0 | 0 | 1 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 96 | 157 | 224 | 130 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 62 | 167 | 131 | 247 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 22 | 216 | 237 | 132 | ||||||||||||
| ND6 (size: 528 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 27 (15.43%)
Alanine (Ala, A)
n = 7 (4.0%)
Serine (Ser, S)
n = 12 (6.86%)
Threonine (Thr, T)
n = 8 (4.57%)
Cysteine (Cys, C)
n = 1 (0.57%)
Valine (Val, V)
n = 29 (16.57%)
Leucine (Leu, L)
n = 18 (10.29%)
Isoleucine (Ile, I)
n = 11 (6.29%)
Methionine (Met, M)
n = 10 (5.71%)
Proline (Pro, P)
n = 3 (1.71%)
Phenylalanine (Phe, F)
n = 15 (8.57%)
Tyrosine (Tyr, Y)
n = 9 (5.14%)
Tryptophan (Trp, W)
n = 4 (2.29%)
Aspartic acid (Asp, D)
n = 3 (1.71%)
Glutamic acid (Glu, E)
n = 8 (4.57%)
Asparagine (Asn, N)
n = 4 (2.29%)
Glutamine (Gln, Q)
n = 1 (0.57%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 4 (2.29%)
Arginine (Arg, R)
n = 1 (0.57%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 11 | 0 | 4 | 1 | 0 | 1 | 0 | 10 | 1 | 0 | 15 | 0 | 4 | 10 | 15 | 0 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 1 | 0 | 6 | 0 | 0 | 1 | 10 | 2 | 7 | 8 | 2 | 0 | 1 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 2 | 1 | 4 | 0 | 3 | 0 | 3 | 2 | 9 | 0 | 3 | 6 | 4 | 0 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 0 | 8 | 1 | 2 | 2 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 74 | 7 | 42 | 53 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 38 | 25 | 30 | 83 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 46 | 6 | 37 | 87 | ||||||||||||
| Total protein-coding genes (size: 11402 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 210 (5.53%)
Alanine (Ala, A)
n = 239 (6.29%)
Serine (Ser, S)
n = 265 (6.98%)
Threonine (Thr, T)
n = 367 (9.66%)
Cysteine (Cys, C)
n = 23 (0.61%)
Valine (Val, V)
n = 164 (4.32%)
Leucine (Leu, L)
n = 638 (16.8%)
Isoleucine (Ile, I)
n = 304 (8.0%)
Methionine (Met, M)
n = 233 (6.13%)
Proline (Pro, P)
n = 203 (5.34%)
Phenylalanine (Phe, F)
n = 244 (6.42%)
Tyrosine (Tyr, Y)
n = 124 (3.26%)
Tryptophan (Trp, W)
n = 104 (2.74%)
Aspartic acid (Asp, D)
n = 66 (1.74%)
Glutamic acid (Glu, E)
n = 89 (2.34%)
Asparagine (Asn, N)
n = 154 (4.05%)
Glutamine (Gln, Q)
n = 97 (2.55%)
Histidine (His, H)
n = 101 (2.66%)
Lysine (Lys, K)
n = 101 (2.66%)
Arginine (Arg, R)
n = 63 (1.66%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 132 | 172 | 194 | 85 | 115 | 280 | 23 | 121 | 91 | 6 | 38 | 31 | 79 | 16 | 105 | 139 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 39 | 11 | 12 | 61 | 81 | 92 | 5 | 43 | 63 | 86 | 18 | 54 | 75 | 71 | 3 | 78 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 106 | 175 | 8 | 52 | 63 | 87 | 5 | 19 | 39 | 69 | 55 | 6 | 14 | 59 | 95 | 30 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 71 | 70 | 19 | 19 | 47 | 91 | 10 | 11 | 13 | 38 | 1 | 2 | 0 | 7 | 0 | 98 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 768 | 967 | 1219 | 844 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 460 | 1016 | 739 | 1583 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 173 | 1177 | 1582 | 866 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​O​r​c​i​n​u​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ o​r​c​a​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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