Viewing data for Plecotus auritus
| Scientific name | Plecotus auritus |
| Common name | Brown big-eared bat |
| Maximum lifespan | 30.00 years (Plecotus auritus@AnAge) |
| Total mtDNA (size: 16900 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 6507 | 10393 | 4085 | 2422 | 4857 | 5536 |
| Base content per 1 kb (bases) | 385 | 615 | 242 | 143 | 287 | 328 |
| Base content (%) | 38.5% | 61.5% | ||||
| Total protein-coding genes (size: 11338 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 4361 | 6977 | 2866 | 1495 | 3449 | 3528 |
| Base content per 1 kb (bases) | 385 | 615 | 253 | 132 | 304 | 311 |
| Base content (%) | 38.5% | 61.5% | ||||
| D-loop (size: 1464 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 605 | 859 | 390 | 215 | 352 | 507 |
| Base content per 1 kb (bases) | 413 | 587 | 266 | 147 | 240 | 346 |
| Base content (%) | 41.3% | 58.7% | ||||
| Total tRNA-coding genes (size: 1509 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 541 | 968 | 300 | 241 | 432 | 536 |
| Base content per 1 kb (bases) | 359 | 641 | 199 | 160 | 286 | 355 |
| Base content (%) | 35.9% | 64.1% | ||||
| Total rRNA-coding genes (size: 2521 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 970 | 1551 | 512 | 458 | 613 | 938 |
| Base content per 1 kb (bases) | 385 | 615 | 203 | 182 | 243 | 372 |
| Base content (%) | 38.5% | 61.5% | ||||
| 12S rRNA gene (size: 960 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 380 | 580 | 203 | 177 | 226 | 354 |
| Base content per 1 kb (bases) | 396 | 604 | 211 | 184 | 235 | 369 |
| Base content (%) | 39.6% | 60.4% | ||||
| 16S rRNA gene (size: 1561 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 590 | 971 | 309 | 281 | 387 | 584 |
| Base content per 1 kb (bases) | 378 | 622 | 198 | 180 | 248 | 374 |
| Base content (%) | 37.8% | 62.2% | ||||
| ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 248 | 433 | 161 | 87 | 226 | 207 |
| Base content per 1 kb (bases) | 364 | 636 | 236 | 128 | 332 | 304 |
| Base content (%) | 36.4% | 63.6% | ||||
| ATP8 (size: 204 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 67 | 137 | 50 | 17 | 62 | 75 |
| Base content per 1 kb (bases) | 328 | 672 | 245 | 83 | 304 | 368 |
| Base content (%) | 32.8% | 67.2% | ||||
| COX1 (size: 1545 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 653 | 892 | 365 | 288 | 503 | 389 |
| Base content per 1 kb (bases) | 423 | 577 | 236 | 186 | 326 | 252 |
| Base content (%) | 42.3% | 57.7% | ||||
| COX2 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 263 | 421 | 158 | 105 | 212 | 209 |
| Base content per 1 kb (bases) | 385 | 615 | 231 | 154 | 310 | 306 |
| Base content (%) | 38.5% | 61.5% | ||||
| COX3 (size: 784 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 322 | 462 | 193 | 129 | 251 | 211 |
| Base content per 1 kb (bases) | 411 | 589 | 246 | 165 | 320 | 269 |
| Base content (%) | 41.1% | 58.9% | ||||
| CYTB (size: 1140 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 466 | 674 | 310 | 156 | 347 | 327 |
| Base content per 1 kb (bases) | 409 | 591 | 272 | 137 | 304 | 287 |
| Base content (%) | 40.9% | 59.1% | ||||
| ND1 (size: 956 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 379 | 577 | 243 | 136 | 287 | 290 |
| Base content per 1 kb (bases) | 396 | 604 | 254 | 142 | 300 | 303 |
| Base content (%) | 39.6% | 60.4% | ||||
| ND2 (size: 1042 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 361 | 681 | 267 | 94 | 294 | 387 |
| Base content per 1 kb (bases) | 346 | 654 | 256 | 90 | 282 | 371 |
| Base content (%) | 34.6% | 65.4% | ||||
| ND3 (size: 346 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 124 | 222 | 83 | 41 | 114 | 108 |
| Base content per 1 kb (bases) | 358 | 642 | 240 | 118 | 329 | 312 |
| Base content (%) | 35.8% | 64.2% | ||||
| ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 527 | 851 | 362 | 165 | 415 | 436 |
| Base content per 1 kb (bases) | 382 | 618 | 263 | 120 | 301 | 316 |
| Base content (%) | 38.2% | 61.8% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 111 | 186 | 80 | 31 | 96 | 90 |
| Base content per 1 kb (bases) | 374 | 626 | 269 | 104 | 323 | 303 |
| Base content (%) | 37.4% | 62.6% | ||||
| ND5 (size: 1821 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 667 | 1154 | 462 | 205 | 556 | 598 |
| Base content per 1 kb (bases) | 366 | 634 | 254 | 113 | 305 | 328 |
| Base content (%) | 36.6% | 63.4% | ||||
| ND6 (size: 528 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 195 | 333 | 147 | 48 | 109 | 224 |
| Base content per 1 kb (bases) | 369 | 631 | 278 | 91 | 206 | 424 |
| Base content (%) | 36.9% | 63.1% | ||||
| ATP6 (size: 681 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.87%) 
Alanine (Ala, A)
n = 15 (6.64%) 
Serine (Ser, S)
n = 12 (5.31%) 
Threonine (Thr, T)
n = 27 (11.95%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 10 (4.42%) 
Leucine (Leu, L)
n = 42 (18.58%) 
Isoleucine (Ile, I)
n = 27 (11.95%) 
Methionine (Met, M)
n = 13 (5.75%) 
Proline (Pro, P)
n = 12 (5.31%) 
Phenylalanine (Phe, F)
n = 13 (5.75%) 
Tyrosine (Tyr, Y)
n = 3 (1.33%) 
Tryptophan (Trp, W)
n = 3 (1.33%) 
Aspartic acid (Asp, D)
n = 1 (0.44%) 
Glutamic acid (Glu, E)
n = 3 (1.33%) 
Asparagine (Asn, N)
n = 10 (4.42%) 
Glutamine (Gln, Q)
n = 7 (3.1%) 
Histidine (His, H)
n = 6 (2.65%) 
Lysine (Lys, K)
n = 6 (2.65%) 
Arginine (Arg, R)
n = 5 (2.21%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 21 | 6 | 10 | 6 | 5 | 8 | 5 | 16 | 4 | 3 | 3 | 0 | 5 | 2 | 8 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 0 | 3 | 5 | 7 | 0 | 3 | 5 | 2 | 1 | 7 | 1 | 2 | 2 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 5 | 15 | 2 | 4 | 0 | 4 | 0 | 1 | 3 | 1 | 2 | 1 | 2 | 6 | 4 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 2 | 1 | 1 | 0 | 4 | 2 | 3 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 2 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 40 | 54 | 87 | 46 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 23 | 62 | 37 | 105 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 24 | 45 | 83 | 75 | ||||||||||||
| ATP8 (size: 204 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLDTSTWLITIMSMIMTLFIMFQLNISKHLYYSSPGPLTVESHKYTNPWEIKWTKIYLPLSLPLR* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.49%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 7 (10.45%)
Threonine (Thr, T)
n = 7 (10.45%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.49%)
Leucine (Leu, L)
n = 10 (14.93%)
Isoleucine (Ile, I)
n = 7 (10.45%)
Methionine (Met, M)
n = 5 (7.46%)
Proline (Pro, P)
n = 6 (8.96%)
Phenylalanine (Phe, F)
n = 2 (2.99%)
Tyrosine (Tyr, Y)
n = 4 (5.97%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 1 (1.49%)
Glutamic acid (Glu, E)
n = 2 (2.99%)
Asparagine (Asn, N)
n = 2 (2.99%)
Glutamine (Gln, Q)
n = 2 (2.99%)
Histidine (His, H)
n = 2 (2.99%)
Lysine (Lys, K)
n = 4 (5.97%)
Arginine (Arg, R)
n = 1 (1.49%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 4 | 3 | 3 | 1 | 1 | 3 | 0 | 3 | 2 | 0 | 1 | 0 | 0 | 0 | 2 | 0 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 4 | 1 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 4 | 1 | 0 | 2 | 4 | 0 | 0 | 1 | 3 | 1 | 0 | 2 | 1 | 1 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 2 | 0 | 0 | 1 | 3 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 5 | 16 | 26 | 21 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 6 | 19 | 18 | 25 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 6 | 15 | 31 | 16 | ||||||||||||
| COX1 (size: 1545 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.95%)
Alanine (Ala, A)
n = 44 (8.56%)
Serine (Ser, S)
n = 32 (6.23%)
Threonine (Thr, T)
n = 34 (6.61%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 39 (7.59%)
Leucine (Leu, L)
n = 62 (12.06%)
Isoleucine (Ile, I)
n = 37 (7.2%)
Methionine (Met, M)
n = 29 (5.64%)
Proline (Pro, P)
n = 29 (5.64%)
Phenylalanine (Phe, F)
n = 42 (8.17%)
Tyrosine (Tyr, Y)
n = 19 (3.7%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 14 (2.72%)
Glutamic acid (Glu, E)
n = 10 (1.95%)
Asparagine (Asn, N)
n = 17 (3.31%)
Glutamine (Gln, Q)
n = 6 (1.17%)
Histidine (His, H)
n = 18 (3.5%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 9 (1.75%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 29 | 8 | 16 | 9 | 6 | 22 | 6 | 13 | 5 | 1 | 7 | 6 | 18 | 8 | 24 | 18 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 13 | 0 | 1 | 16 | 13 | 13 | 2 | 6 | 14 | 16 | 10 | 15 | 7 | 7 | 0 | 9 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 15 | 1 | 11 | 9 | 7 | 1 | 0 | 4 | 13 | 6 | 2 | 6 | 10 | 7 | 8 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 6 | 4 | 9 | 5 | 7 | 2 | 1 | 2 | 4 | 2 | 0 | 0 | 1 | 0 | 15 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 153 | 105 | 130 | 127 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 77 | 135 | 94 | 209 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 58 | 125 | 165 | 167 | ||||||||||||
| COX2 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 7 (3.08%)
Alanine (Ala, A)
n = 9 (3.96%)
Serine (Ser, S)
n = 22 (9.69%)
Threonine (Thr, T)
n = 18 (7.93%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 14 (6.17%)
Leucine (Leu, L)
n = 34 (14.98%)
Isoleucine (Ile, I)
n = 20 (8.81%)
Methionine (Met, M)
n = 11 (4.85%)
Proline (Pro, P)
n = 13 (5.73%)
Phenylalanine (Phe, F)
n = 6 (2.64%)
Tyrosine (Tyr, Y)
n = 11 (4.85%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 11 (4.85%)
Glutamic acid (Glu, E)
n = 14 (6.17%)
Asparagine (Asn, N)
n = 5 (2.2%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 7 (3.08%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 15 | 5 | 7 | 7 | 4 | 6 | 2 | 14 | 6 | 2 | 4 | 2 | 6 | 2 | 4 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 2 | 0 | 3 | 4 | 2 | 0 | 1 | 1 | 3 | 2 | 5 | 2 | 5 | 1 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 2 | 8 | 3 | 3 | 6 | 6 | 2 | 1 | 4 | 7 | 4 | 1 | 1 | 3 | 2 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 6 | 10 | 4 | 7 | 4 | 4 | 0 | 2 | 0 | 4 | 0 | 0 | 0 | 0 | 1 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 55 | 53 | 63 | 57 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 25 | 57 | 61 | 85 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 25 | 48 | 85 | 70 | ||||||||||||
| COX3 (size: 784 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 15 (5.77%)
Serine (Ser, S)
n = 21 (8.08%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 35 (13.46%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 11 (4.23%)
Proline (Pro, P)
n = 11 (4.23%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 7 (2.69%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 12 | 2 | 6 | 7 | 5 | 14 | 5 | 3 | 5 | 2 | 1 | 6 | 8 | 1 | 14 | 9 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 0 | 1 | 3 | 7 | 5 | 0 | 2 | 5 | 10 | 3 | 2 | 3 | 6 | 0 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 12 | 1 | 8 | 1 | 6 | 1 | 3 | 2 | 10 | 2 | 1 | 1 | 4 | 3 | 7 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 9 | 5 | 3 | 2 | 1 | 1 | 1 | 0 | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 62 | 70 | 61 | 68 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 43 | 64 | 55 | 99 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 24 | 59 | 95 | 83 | ||||||||||||
| CYTB (size: 1140 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.33%)
Alanine (Ala, A)
n = 23 (6.07%)
Serine (Ser, S)
n = 27 (7.12%)
Threonine (Thr, T)
n = 26 (6.86%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 18 (4.75%)
Leucine (Leu, L)
n = 59 (15.57%)
Isoleucine (Ile, I)
n = 36 (9.5%)
Methionine (Met, M)
n = 17 (4.49%)
Proline (Pro, P)
n = 23 (6.07%)
Phenylalanine (Phe, F)
n = 24 (6.33%)
Tyrosine (Tyr, Y)
n = 17 (4.49%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 12 (3.17%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 16 (4.22%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 13 (3.43%)
Lysine (Lys, K)
n = 8 (2.11%)
Arginine (Arg, R)
n = 8 (2.11%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 22 | 14 | 15 | 9 | 12 | 20 | 4 | 13 | 5 | 1 | 2 | 6 | 8 | 2 | 11 | 13 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 4 | 4 | 9 | 10 | 0 | 0 | 9 | 12 | 3 | 5 | 8 | 10 | 0 | 9 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 5 | 12 | 0 | 8 | 6 | 8 | 0 | 1 | 4 | 11 | 6 | 1 | 1 | 4 | 12 | 8 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 5 | 4 | 2 | 5 | 7 | 6 | 2 | 1 | 1 | 5 | 1 | 1 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 83 | 95 | 109 | 93 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 54 | 94 | 78 | 154 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 19 | 121 | 140 | 100 | ||||||||||||
| ND1 (size: 956 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 13 (4.1%)
Alanine (Ala, A)
n = 30 (9.46%)
Serine (Ser, S)
n = 19 (5.99%)
Threonine (Thr, T)
n = 26 (8.2%)
Cysteine (Cys, C)
n = 1 (0.32%)
Valine (Val, V)
n = 15 (4.73%)
Leucine (Leu, L)
n = 61 (19.24%)
Isoleucine (Ile, I)
n = 23 (7.26%)
Methionine (Met, M)
n = 19 (5.99%)
Proline (Pro, P)
n = 21 (6.62%)
Phenylalanine (Phe, F)
n = 18 (5.68%)
Tyrosine (Tyr, Y)
n = 13 (4.1%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.95%)
Glutamic acid (Glu, E)
n = 11 (3.47%)
Asparagine (Asn, N)
n = 13 (4.1%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 2 (0.63%)
Lysine (Lys, K)
n = 8 (2.52%)
Arginine (Arg, R)
n = 7 (2.21%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 15 | 8 | 15 | 5 | 5 | 25 | 12 | 12 | 5 | 1 | 4 | 3 | 6 | 2 | 11 | 7 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 1 | 0 | 7 | 9 | 14 | 0 | 3 | 3 | 3 | 4 | 3 | 6 | 11 | 1 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 13 | 0 | 4 | 4 | 9 | 0 | 1 | 1 | 9 | 4 | 2 | 2 | 7 | 6 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 9 | 2 | 1 | 2 | 7 | 1 | 0 | 0 | 6 | 1 | 0 | 0 | 0 | 0 | 7 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 72 | 83 | 91 | 72 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 32 | 94 | 56 | 136 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 32 | 66 | 142 | 78 | ||||||||||||
| ND2 (size: 1042 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 20 (5.78%)
Serine (Ser, S)
n = 23 (6.65%)
Threonine (Thr, T)
n = 46 (13.29%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 6 (1.73%)
Leucine (Leu, L)
n = 57 (16.47%)
Isoleucine (Ile, I)
n = 36 (10.4%)
Methionine (Met, M)
n = 42 (12.14%)
Proline (Pro, P)
n = 19 (5.49%)
Phenylalanine (Phe, F)
n = 9 (2.6%)
Tyrosine (Tyr, Y)
n = 9 (2.6%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 20 (5.78%)
Glutamine (Gln, Q)
n = 9 (2.6%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 11 (3.18%)
Arginine (Arg, R)
n = 4 (1.16%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 20 | 16 | 40 | 7 | 8 | 20 | 5 | 14 | 6 | 3 | 1 | 1 | 2 | 2 | 5 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 1 | 4 | 6 | 10 | 0 | 1 | 4 | 7 | 2 | 3 | 6 | 9 | 1 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 12 | 25 | 1 | 3 | 8 | 11 | 0 | 1 | 0 | 8 | 1 | 0 | 3 | 10 | 10 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 4 | 0 | 0 | 1 | 11 | 0 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 45 | 78 | 156 | 68 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 30 | 107 | 60 | 150 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 19 | 82 | 171 | 75 | ||||||||||||
| ND3 (size: 1042 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 20 (5.78%)
Serine (Ser, S)
n = 23 (6.65%)
Threonine (Thr, T)
n = 46 (13.29%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 6 (1.73%)
Leucine (Leu, L)
n = 57 (16.47%)
Isoleucine (Ile, I)
n = 36 (10.4%)
Methionine (Met, M)
n = 42 (12.14%)
Proline (Pro, P)
n = 19 (5.49%)
Phenylalanine (Phe, F)
n = 9 (2.6%)
Tyrosine (Tyr, Y)
n = 9 (2.6%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 20 (5.78%)
Glutamine (Gln, Q)
n = 9 (2.6%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 11 (3.18%)
Arginine (Arg, R)
n = 4 (1.16%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 20 | 16 | 40 | 7 | 8 | 20 | 5 | 14 | 6 | 3 | 1 | 1 | 2 | 2 | 5 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 1 | 4 | 6 | 10 | 0 | 1 | 4 | 7 | 2 | 3 | 6 | 9 | 1 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 12 | 25 | 1 | 3 | 8 | 11 | 0 | 1 | 0 | 8 | 1 | 0 | 3 | 10 | 10 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 4 | 0 | 0 | 1 | 11 | 0 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 45 | 78 | 156 | 68 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 30 | 107 | 60 | 150 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 19 | 82 | 171 | 75 | ||||||||||||
| ND4 (size: 1378 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.93%)
Alanine (Ala, A)
n = 31 (6.77%)
Serine (Ser, S)
n = 40 (8.73%)
Threonine (Thr, T)
n = 40 (8.73%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 9 (1.97%)
Leucine (Leu, L)
n = 93 (20.31%)
Isoleucine (Ile, I)
n = 38 (8.3%)
Methionine (Met, M)
n = 41 (8.95%)
Proline (Pro, P)
n = 23 (5.02%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 19 (4.15%)
Tryptophan (Trp, W)
n = 13 (2.84%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 7 (1.53%)
Asparagine (Asn, N)
n = 20 (4.37%)
Glutamine (Gln, Q)
n = 12 (2.62%)
Histidine (His, H)
n = 10 (2.18%)
Lysine (Lys, K)
n = 12 (2.62%)
Arginine (Arg, R)
n = 9 (1.97%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 27 | 11 | 33 | 10 | 10 | 40 | 11 | 20 | 8 | 4 | 2 | 2 | 5 | 0 | 7 | 9 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 8 | 1 | 3 | 2 | 14 | 10 | 5 | 3 | 5 | 5 | 5 | 2 | 13 | 8 | 0 | 14 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 12 | 14 | 0 | 9 | 8 | 11 | 0 | 6 | 6 | 15 | 4 | 2 | 2 | 11 | 9 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 6 | 6 | 1 | 2 | 2 | 11 | 1 | 0 | 1 | 7 | 1 | 0 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 69 | 125 | 163 | 102 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 56 | 122 | 84 | 197 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 40 | 115 | 189 | 115 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 7 (7.14%)
Serine (Ser, S)
n = 8 (8.16%)
Threonine (Thr, T)
n = 10 (10.2%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 5 (5.1%)
Leucine (Leu, L)
n = 25 (25.51%)
Isoleucine (Ile, I)
n = 7 (7.14%)
Methionine (Met, M)
n = 8 (8.16%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 3 (3.06%)
Tyrosine (Tyr, Y)
n = 3 (3.06%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 5 (5.1%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 3 (3.06%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 4 | 3 | 7 | 5 | 3 | 14 | 1 | 2 | 2 | 0 | 1 | 0 | 3 | 1 | 2 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 3 | 2 | 1 | 4 | 0 | 0 | 2 | 1 | 1 | 1 | 0 | 0 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 2 | 3 | 0 | 4 | 1 | 3 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 3 | 2 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 19 | 30 | 30 | 20 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 8 | 26 | 17 | 48 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 4 | 24 | 43 | 28 | ||||||||||||
| ND5 (size: 1821 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 29 (4.79%)
Alanine (Ala, A)
n = 36 (5.94%)
Serine (Ser, S)
n = 53 (8.75%)
Threonine (Thr, T)
n = 62 (10.23%)
Cysteine (Cys, C)
n = 4 (0.66%)
Valine (Val, V)
n = 13 (2.15%)
Leucine (Leu, L)
n = 84 (13.86%)
Isoleucine (Ile, I)
n = 60 (9.9%)
Methionine (Met, M)
n = 49 (8.09%)
Proline (Pro, P)
n = 25 (4.13%)
Phenylalanine (Phe, F)
n = 44 (7.26%)
Tyrosine (Tyr, Y)
n = 17 (2.81%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 10 (1.65%)
Glutamic acid (Glu, E)
n = 14 (2.31%)
Asparagine (Asn, N)
n = 32 (5.28%)
Glutamine (Gln, Q)
n = 19 (3.14%)
Histidine (His, H)
n = 11 (1.82%)
Lysine (Lys, K)
n = 22 (3.63%)
Arginine (Arg, R)
n = 10 (1.65%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 40 | 20 | 44 | 10 | 9 | 35 | 10 | 15 | 16 | 3 | 2 | 4 | 6 | 1 | 28 | 16 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 1 | 3 | 13 | 13 | 9 | 1 | 4 | 10 | 14 | 1 | 8 | 11 | 6 | 0 | 20 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 19 | 20 | 3 | 11 | 10 | 19 | 0 | 3 | 10 | 5 | 12 | 0 | 5 | 15 | 17 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 9 | 10 | 4 | 6 | 4 | 20 | 2 | 0 | 3 | 7 | 0 | 0 | 0 | 1 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 102 | 129 | 238 | 138 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 68 | 163 | 126 | 250 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 35 | 170 | 234 | 168 | ||||||||||||
| ND6 (size: 528 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 26 (14.86%)
Alanine (Ala, A)
n = 5 (2.86%)
Serine (Ser, S)
n = 16 (9.14%)
Threonine (Thr, T)
n = 6 (3.43%)
Cysteine (Cys, C)
n = 2 (1.14%)
Valine (Val, V)
n = 27 (15.43%)
Leucine (Leu, L)
n = 20 (11.43%)
Isoleucine (Ile, I)
n = 19 (10.86%)
Methionine (Met, M)
n = 9 (5.14%)
Proline (Pro, P)
n = 3 (1.71%)
Phenylalanine (Phe, F)
n = 11 (6.29%)
Tyrosine (Tyr, Y)
n = 9 (5.14%)
Tryptophan (Trp, W)
n = 4 (2.29%)
Aspartic acid (Asp, D)
n = 4 (2.29%)
Glutamic acid (Glu, E)
n = 7 (4.0%)
Asparagine (Asn, N)
n = 3 (1.71%)
Glutamine (Gln, Q)
n = 1 (0.57%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (1.14%)
Arginine (Arg, R)
n = 1 (0.57%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 18 | 1 | 1 | 3 | 0 | 1 | 1 | 11 | 1 | 0 | 10 | 5 | 5 | 7 | 10 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 8 | 1 | 1 | 3 | 0 | 1 | 1 | 13 | 2 | 5 | 6 | 1 | 0 | 2 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 1 | 1 | 5 | 1 | 3 | 0 | 6 | 1 | 8 | 1 | 3 | 4 | 3 | 0 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 1 | 6 | 3 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 69 | 10 | 46 | 51 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 40 | 23 | 27 | 86 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 38 | 15 | 36 | 87 | ||||||||||||
| Total protein-coding genes (size: 11406 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 216 (5.69%)
Alanine (Ala, A)
n = 243 (6.4%)
Serine (Ser, S)
n = 290 (7.63%)
Threonine (Thr, T)
n = 331 (8.71%)
Cysteine (Cys, C)
n = 24 (0.63%)
Valine (Val, V)
n = 175 (4.61%)
Leucine (Leu, L)
n = 608 (16.0%)
Isoleucine (Ile, I)
n = 332 (8.74%)
Methionine (Met, M)
n = 262 (6.9%)
Proline (Pro, P)
n = 192 (5.05%)
Phenylalanine (Phe, F)
n = 220 (5.79%)
Tyrosine (Tyr, Y)
n = 139 (3.66%)
Tryptophan (Trp, W)
n = 104 (2.74%)
Aspartic acid (Asp, D)
n = 67 (1.76%)
Glutamic acid (Glu, E)
n = 94 (2.47%)
Asparagine (Asn, N)
n = 154 (4.05%)
Glutamine (Gln, Q)
n = 88 (2.32%)
Histidine (His, H)
n = 94 (2.47%)
Lysine (Lys, K)
n = 92 (2.42%)
Arginine (Arg, R)
n = 67 (1.76%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 232 | 100 | 205 | 83 | 69 | 219 | 64 | 143 | 68 | 20 | 38 | 35 | 74 | 28 | 132 | 88 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 57 | 7 | 17 | 60 | 86 | 87 | 10 | 36 | 61 | 80 | 39 | 55 | 63 | 68 | 6 | 96 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 76 | 146 | 13 | 72 | 59 | 93 | 5 | 24 | 37 | 91 | 48 | 14 | 30 | 79 | 75 | 39 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 55 | 67 | 27 | 36 | 31 | 78 | 14 | 9 | 11 | 42 | 5 | 1 | 0 | 6 | 1 | 90 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 795 | 876 | 1233 | 896 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 473 | 995 | 735 | 1597 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 333 | 911 | 1467 | 1089 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​l​e​c​o​t​u​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ a​u​r​i​t​u​s​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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