Viewing data for Gadus ogac


Scientific name Gadus ogac
Common name Greenland cod
Maximum lifespan 12.00 years (Gadus ogac@AnAge)

Total mtDNA (size: 15564 bases) GC AT G C A T
Base content (bases) 6687 8847 4048 2639 4536 4311
Base content per 1 kb (bases) 430 568 260 170 291 277
Base content (%) 43.0% 56.8%
Total protein-coding genes (size: 11444 bases) GC AT G C A T
Base content (bases) 4842 6600 3064 1778 3571 3029
Base content per 1 kb (bases) 423 577 268 155 312 265
Base content (%) 42.3% 57.7%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1466 bases) GC AT G C A T
Base content (bases) 664 782 361 303 353 429
Base content per 1 kb (bases) 453 533 246 207 241 293
Base content (%) 45.3% 53.3%
Total rRNA-coding genes (size: 2624 bases) GC AT G C A T
Base content (bases) 1164 1453 614 550 604 849
Base content per 1 kb (bases) 444 554 234 210 230 324
Base content (%) 44.4% 55.4%
12S rRNA gene (size: 953 bases) GC AT G C A T
Base content (bases) 434 518 225 209 215 303
Base content per 1 kb (bases) 455 544 236 219 226 318
Base content (%) 45.5% 54.4%
16S rRNA gene (size: 1671 bases) GC AT G C A T
Base content (bases) 730 935 389 341 389 546
Base content per 1 kb (bases) 437 560 233 204 233 327
Base content (%) 43.7% 56.0%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 263 421 180 83 241 180
Base content per 1 kb (bases) 385 615 263 121 352 263
Base content (%) 38.5% 61.5%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 70 98 54 16 45 53
Base content per 1 kb (bases) 417 583 321 95 268 315
Base content (%) 41.7% 58.3%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 668 883 393 275 491 392
Base content per 1 kb (bases) 431 569 253 177 317 253
Base content (%) 43.1% 56.9%
COX2 (size: 699 bases) GC AT G C A T
Base content (bases) 281 418 172 109 210 208
Base content per 1 kb (bases) 402 598 246 156 300 298
Base content (%) 40.2% 59.8%
COX3 (size: 786 bases) GC AT G C A T
Base content (bases) 343 443 207 136 249 194
Base content per 1 kb (bases) 436 564 263 173 317 247
Base content (%) 43.6% 56.4%
CYTB (size: 1161 bases) GC AT G C A T
Base content (bases) 488 673 305 183 388 285
Base content per 1 kb (bases) 420 580 263 158 334 245
Base content (%) 42.0% 58.0%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 427 548 267 160 316 232
Base content per 1 kb (bases) 438 562 274 164 324 238
Base content (%) 43.8% 56.2%
ND2 (size: 1047 bases) GC AT G C A T
Base content (bases) 436 610 293 143 322 288
Base content per 1 kb (bases) 416 583 280 137 308 275
Base content (%) 41.6% 58.3%
ND3 (size: 351 bases) GC AT G C A T
Base content (bases) 150 201 94 56 119 82
Base content per 1 kb (bases) 427 573 268 160 339 234
Base content (%) 42.7% 57.3%
ND4 (size: 1386 bases) GC AT G C A T
Base content (bases) 587 799 366 221 446 353
Base content per 1 kb (bases) 424 576 264 159 322 255
Base content (%) 42.4% 57.6%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 141 156 94 47 88 68
Base content per 1 kb (bases) 475 525 316 158 296 229
Base content (%) 47.5% 52.5%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 763 1075 491 272 564 511
Base content per 1 kb (bases) 415 585 267 148 307 278
Base content (%) 41.5% 58.5%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 231 291 152 79 97 194
Base content per 1 kb (bases) 443 557 291 151 186 372
Base content (%) 44.3% 55.7%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 19 (8.37%)
Serine (Ser, S)
n = 13 (5.73%)
Threonine (Thr, T)
n = 17 (7.49%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (6.17%)
Leucine (Leu, L)
n = 54 (23.79%)
Isoleucine (Ile, I)
n = 18 (7.93%)
Methionine (Met, M)
n = 12 (5.29%)
Proline (Pro, P)
n = 17 (7.49%)
Phenylalanine (Phe, F)
n = 12 (5.29%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 5 (2.2%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 6 11 18 5 15 2 14 5 2 7 3 4 0 7 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 6 6 7 0 5 2 4 0 9 4 4 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 9 0 3 2 3 0 1 4 3 0 0 0 7 1 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 3 1 0 1 1 0 0 2 3 1 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
49 75 61 43
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
27 61 30 110
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 44 89 88
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFMIFMFTWAIFLTILPPKVMAHTFPNEPSPQGMTTPKTAPWNWPWH*
Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.82%)
Alanine (Ala, A)
n = 4 (7.27%)
Serine (Ser, S)
n = 1 (1.82%)
Threonine (Thr, T)
n = 6 (10.91%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.82%)
Leucine (Leu, L)
n = 3 (5.45%)
Isoleucine (Ile, I)
n = 3 (5.45%)
Methionine (Met, M)
n = 5 (9.09%)
Proline (Pro, P)
n = 11 (20.0%)
Phenylalanine (Phe, F)
n = 5 (9.09%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 1 (1.82%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 1 3 1 0 1 0 1 1 1 0 0 1 0 2 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 2 2 0 1 0 0 0 3 5 3 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 2 0 1 0 0 0 0 0 0 0 0 0 1 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 0 0 0 2 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
7 17 19 13
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 22 11 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 15 23 15
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.91%)
Alanine (Ala, A)
n = 48 (9.3%)
Serine (Ser, S)
n = 27 (5.23%)
Threonine (Thr, T)
n = 36 (6.98%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 39 (7.56%)
Leucine (Leu, L)
n = 62 (12.02%)
Isoleucine (Ile, I)
n = 40 (7.75%)
Methionine (Met, M)
n = 28 (5.43%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 14 (2.71%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 9 (1.74%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
31 9 20 13 16 19 5 9 7 1 11 7 17 4 20 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 1 0 15 15 17 1 10 15 10 11 9 11 8 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 20 1 13 3 5 2 1 3 5 13 0 0 8 6 11
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 8 3 10 5 8 0 2 2 3 2 0 0 0 1 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
159 117 130 111
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 135 94 211
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
39 141 168 169
COX2 (size: 699 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.88%)
Alanine (Ala, A)
n = 18 (7.76%)
Serine (Ser, S)
n = 18 (7.76%)
Threonine (Thr, T)
n = 9 (3.88%)
Cysteine (Cys, C)
n = 2 (0.86%)
Valine (Val, V)
n = 17 (7.33%)
Leucine (Leu, L)
n = 29 (12.5%)
Isoleucine (Ile, I)
n = 22 (9.48%)
Methionine (Met, M)
n = 11 (4.74%)
Proline (Pro, P)
n = 14 (6.03%)
Phenylalanine (Phe, F)
n = 9 (3.88%)
Tyrosine (Tyr, Y)
n = 9 (3.88%)
Tryptophan (Trp, W)
n = 5 (2.16%)
Aspartic acid (Asp, D)
n = 13 (5.6%)
Glutamic acid (Glu, E)
n = 15 (6.47%)
Asparagine (Asn, N)
n = 4 (1.72%)
Glutamine (Gln, Q)
n = 8 (3.45%)
Histidine (His, H)
n = 10 (4.31%)
Lysine (Lys, K)
n = 4 (1.72%)
Arginine (Arg, R)
n = 6 (2.59%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 5 9 9 2 8 2 8 7 1 6 6 5 0 6 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 0 1 6 10 1 3 2 4 0 4 5 4 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 3 0 4 2 9 0 1 2 4 5 0 0 2 2 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 12 3 5 8 3 1 3 0 3 0 1 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 59 54 48
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 56 63 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 57 91 74
COX3 (size: 786 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.43%)
Alanine (Ala, A)
n = 21 (8.05%)
Serine (Ser, S)
n = 13 (4.98%)
Threonine (Thr, T)
n = 25 (9.58%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 17 (6.51%)
Leucine (Leu, L)
n = 32 (12.26%)
Isoleucine (Ile, I)
n = 14 (5.36%)
Methionine (Met, M)
n = 7 (2.68%)
Proline (Pro, P)
n = 12 (4.6%)
Phenylalanine (Phe, F)
n = 24 (9.2%)
Tyrosine (Tyr, Y)
n = 12 (4.6%)
Tryptophan (Trp, W)
n = 12 (4.6%)
Aspartic acid (Asp, D)
n = 6 (2.3%)
Glutamic acid (Glu, E)
n = 9 (3.45%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 7 (2.68%)
Histidine (His, H)
n = 17 (6.51%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 6 (2.3%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 5 5 11 3 8 0 9 5 2 4 6 6 1 13 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 8 3 10 0 3 12 5 2 5 5 2 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 11 0 2 2 6 0 1 2 9 3 2 1 1 0 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 5 4 4 2 1 1 1 1 3 1 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 64 52 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
45 68 55 94
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 75 87 84
CYTB (size: 1161 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.74%)
Alanine (Ala, A)
n = 28 (7.25%)
Serine (Ser, S)
n = 24 (6.22%)
Threonine (Thr, T)
n = 24 (6.22%)
Cysteine (Cys, C)
n = 4 (1.04%)
Valine (Val, V)
n = 34 (8.81%)
Leucine (Leu, L)
n = 58 (15.03%)
Isoleucine (Ile, I)
n = 22 (5.7%)
Methionine (Met, M)
n = 14 (3.63%)
Proline (Pro, P)
n = 23 (5.96%)
Phenylalanine (Phe, F)
n = 34 (8.81%)
Tyrosine (Tyr, Y)
n = 13 (3.37%)
Tryptophan (Trp, W)
n = 12 (3.11%)
Aspartic acid (Asp, D)
n = 10 (2.59%)
Glutamic acid (Glu, E)
n = 7 (1.81%)
Asparagine (Asn, N)
n = 19 (4.92%)
Glutamine (Gln, Q)
n = 6 (1.55%)
Histidine (His, H)
n = 12 (3.11%)
Lysine (Lys, K)
n = 8 (2.07%)
Arginine (Arg, R)
n = 8 (2.07%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 10 12 19 10 13 3 11 6 0 11 6 13 4 13 21
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 2 7 13 8 0 6 9 8 3 10 8 5 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 9 0 7 3 10 0 1 3 7 6 1 2 15 4 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 6 1 7 3 5 3 1 2 1 4 0 0 0 1 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
105 94 91 97
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 95 76 162
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 116 118 129
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (5.25%)
Alanine (Ala, A)
n = 34 (10.49%)
Serine (Ser, S)
n = 28 (8.64%)
Threonine (Thr, T)
n = 22 (6.79%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 24 (7.41%)
Leucine (Leu, L)
n = 60 (18.52%)
Isoleucine (Ile, I)
n = 17 (5.25%)
Methionine (Met, M)
n = 11 (3.4%)
Proline (Pro, P)
n = 22 (6.79%)
Phenylalanine (Phe, F)
n = 18 (5.56%)
Tyrosine (Tyr, Y)
n = 13 (4.01%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 10 (3.09%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 3 (0.93%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 4 7 18 14 12 2 11 4 2 10 1 10 3 13 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 7 13 13 1 1 10 3 3 6 10 4 2 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 9 1 5 8 7 2 6 0 8 5 1 3 6 4 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 9 2 3 1 5 2 4 0 3 1 0 0 0 1 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
90 85 73 77
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 100 55 130
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
30 82 104 109
ND2 (size: 1047 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.6%)
Alanine (Ala, A)
n = 38 (10.92%)
Serine (Ser, S)
n = 29 (8.33%)
Threonine (Thr, T)
n = 38 (10.92%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 9 (2.59%)
Leucine (Leu, L)
n = 66 (18.97%)
Isoleucine (Ile, I)
n = 28 (8.05%)
Methionine (Met, M)
n = 17 (4.89%)
Proline (Pro, P)
n = 20 (5.75%)
Phenylalanine (Phe, F)
n = 16 (4.6%)
Tyrosine (Tyr, Y)
n = 6 (1.72%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 4 (1.15%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 11 (3.16%)
Glutamine (Gln, Q)
n = 14 (4.02%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 8 (2.3%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 9 12 13 10 13 7 21 9 5 2 1 5 1 12 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 0 12 12 14 0 3 6 6 1 10 6 4 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 15 1 10 3 9 0 2 5 4 2 3 2 6 5 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 2 2 1 3 6 2 1 1 0 2 0 0 0 1 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 88 109 80
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 118 55 136
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
32 86 124 106
ND3 (size: 1047 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.6%)
Alanine (Ala, A)
n = 38 (10.92%)
Serine (Ser, S)
n = 29 (8.33%)
Threonine (Thr, T)
n = 38 (10.92%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 9 (2.59%)
Leucine (Leu, L)
n = 66 (18.97%)
Isoleucine (Ile, I)
n = 28 (8.05%)
Methionine (Met, M)
n = 17 (4.89%)
Proline (Pro, P)
n = 20 (5.75%)
Phenylalanine (Phe, F)
n = 16 (4.6%)
Tyrosine (Tyr, Y)
n = 6 (1.72%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 4 (1.15%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 11 (3.16%)
Glutamine (Gln, Q)
n = 14 (4.02%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 8 (2.3%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 9 12 13 10 13 7 21 9 5 2 1 5 1 12 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 0 12 12 14 0 3 6 6 1 10 6 4 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 15 1 10 3 9 0 2 5 4 2 3 2 6 5 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 2 2 1 3 6 2 1 1 0 2 0 0 0 1 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 88 109 80
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 118 55 136
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
32 86 124 106
ND4 (size: 1386 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (6.07%)
Alanine (Ala, A)
n = 41 (8.89%)
Serine (Ser, S)
n = 30 (6.51%)
Threonine (Thr, T)
n = 38 (8.24%)
Cysteine (Cys, C)
n = 5 (1.08%)
Valine (Val, V)
n = 15 (3.25%)
Leucine (Leu, L)
n = 100 (21.69%)
Isoleucine (Ile, I)
n = 32 (6.94%)
Methionine (Met, M)
n = 29 (6.29%)
Proline (Pro, P)
n = 28 (6.07%)
Phenylalanine (Phe, F)
n = 16 (3.47%)
Tyrosine (Tyr, Y)
n = 14 (3.04%)
Tryptophan (Trp, W)
n = 18 (3.9%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 9 (1.95%)
Asparagine (Asn, N)
n = 13 (2.82%)
Glutamine (Gln, Q)
n = 11 (2.39%)
Histidine (His, H)
n = 9 (1.95%)
Lysine (Lys, K)
n = 10 (2.17%)
Arginine (Arg, R)
n = 11 (2.39%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 8 19 30 17 20 11 17 8 3 8 0 6 1 12 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 5 0 17 14 9 1 3 10 9 6 18 6 3 1 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 12 4 2 7 10 1 6 4 7 7 3 5 7 6 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 7 2 2 2 9 1 1 3 5 2 1 0 0 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
97 137 133 95
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
73 127 70 192
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
51 102 150 159
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 16 (16.33%)
Serine (Ser, S)
n = 8 (8.16%)
Threonine (Thr, T)
n = 9 (9.18%)
Cysteine (Cys, C)
n = 4 (4.08%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 8 (8.16%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 2 (2.04%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 1 (1.02%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 5 (5.1%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 7 6 5 3 3 5 2 1 0 0 1 0 4 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 3 1 3 10 2 1 1 2 1 1 0 2 0 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 5 0 1 4 2 0 1 0 0 0 1 0 1 0 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 2 0 1 1 0 0 0 0 2 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
26 29 21 23
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
13 34 14 38
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 31 33 27
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 32 (5.23%)
Alanine (Ala, A)
n = 57 (9.31%)
Serine (Ser, S)
n = 48 (7.84%)
Threonine (Thr, T)
n = 62 (10.13%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 32 (5.23%)
Leucine (Leu, L)
n = 106 (17.32%)
Isoleucine (Ile, I)
n = 40 (6.54%)
Methionine (Met, M)
n = 27 (4.41%)
Proline (Pro, P)
n = 28 (4.58%)
Phenylalanine (Phe, F)
n = 37 (6.05%)
Tyrosine (Tyr, Y)
n = 9 (1.47%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 14 (2.29%)
Glutamic acid (Glu, E)
n = 11 (1.8%)
Asparagine (Asn, N)
n = 24 (3.92%)
Glutamine (Gln, Q)
n = 19 (3.1%)
Histidine (His, H)
n = 16 (2.61%)
Lysine (Lys, K)
n = 20 (3.27%)
Arginine (Arg, R)
n = 10 (1.63%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
27 13 22 30 11 26 5 28 16 3 10 8 8 6 20 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 2 4 18 15 22 2 7 9 12 3 8 10 7 3 20
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
23 18 1 13 10 8 0 3 14 6 3 2 6 10 14 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 6 5 10 4 16 4 0 3 5 2 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
145 145 190 132
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 178 114 242
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
47 168 207 190
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.45%)
Alanine (Ala, A)
n = 19 (10.98%)
Serine (Ser, S)
n = 12 (6.94%)
Threonine (Thr, T)
n = 3 (1.73%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 26 (15.03%)
Leucine (Leu, L)
n = 34 (19.65%)
Isoleucine (Ile, I)
n = 5 (2.89%)
Methionine (Met, M)
n = 7 (4.05%)
Proline (Pro, P)
n = 5 (2.89%)
Phenylalanine (Phe, F)
n = 6 (3.47%)
Tyrosine (Tyr, Y)
n = 8 (4.62%)
Tryptophan (Trp, W)
n = 7 (4.05%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 7 (4.05%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (1.73%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 0 5 8 1 2 1 18 0 0 7 1 11 7 3 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 0 7 5 4 3 7 3 8 7 3 1 0 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 4 3 2 2 0 1 8 0 1 4 0 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 3 4 2 0 0 0 1 0 0 2 0 0 0 1 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
79 21 17 57
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 38 20 78
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
35 20 60 59
Total protein-coding genes (size: 11466 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 244 (6.39%)
Alanine (Ala, A)
n = 351 (9.19%)
Serine (Ser, S)
n = 261 (6.83%)
Threonine (Thr, T)
n = 294 (7.69%)
Cysteine (Cys, C)
n = 29 (0.76%)
Valine (Val, V)
n = 232 (6.07%)
Leucine (Leu, L)
n = 656 (17.17%)
Isoleucine (Ile, I)
n = 252 (6.6%)
Methionine (Met, M)
n = 178 (4.66%)
Proline (Pro, P)
n = 218 (5.71%)
Phenylalanine (Phe, F)
n = 232 (6.07%)
Tyrosine (Tyr, Y)
n = 108 (2.83%)
Tryptophan (Trp, W)
n = 120 (3.14%)
Aspartic acid (Asp, D)
n = 79 (2.07%)
Glutamic acid (Glu, E)
n = 97 (2.54%)
Asparagine (Asn, N)
n = 111 (2.9%)
Glutamine (Gln, Q)
n = 94 (2.46%)
Histidine (His, H)
n = 106 (2.77%)
Lysine (Lys, K)
n = 71 (1.86%)
Arginine (Arg, R)
n = 75 (1.96%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
177 75 133 184 98 150 42 157 73 21 76 40 88 28 132 100
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
45 19 10 103 118 118 12 51 81 74 37 88 77 44 9 84
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
85 117 8 68 48 74 7 25 39 62 46 15 25 65 46 49
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
57 69 28 46 33 56 15 15 14 29 17 2 0 5 6 105
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1002 967 972 879
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
533 1060 677 1550
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
315 967 1294 1244 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​G​a​d​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ o​g​a​c​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.