Viewing data for Hynobius leechii


Scientific name Hynobius leechii
Common name Chinese salamander
Maximum lifespan 7.10 years (Hynobius leechii@AnAge)

Total mtDNA (size: 16428 bases) GC AT G C A T
Base content (bases) 5577 10851 3330 2247 5342 5509
Base content per 1 kb (bases) 339 661 203 137 325 335
Base content (%) 33.9% 66.1%
Total protein-coding genes (size: 11369 bases) GC AT G C A T
Base content (bases) 3830 7539 2366 1464 3857 3682
Base content per 1 kb (bases) 337 663 208 129 339 324
Base content (%) 33.7% 66.3%
D-loop (size: 802 bases) GC AT G C A T
Base content (bases) 282 520 154 128 283 237
Base content per 1 kb (bases) 352 648 192 160 353 296
Base content (%) 35.2% 64.8%
Total tRNA-coding genes (size: 1536 bases) GC AT G C A T
Base content (bases) 538 998 305 233 460 538
Base content per 1 kb (bases) 350 650 199 152 299 350
Base content (%) 35.0% 65.0%
Total rRNA-coding genes (size: 2535 bases) GC AT G C A T
Base content (bases) 868 1667 463 405 670 997
Base content per 1 kb (bases) 342 658 183 160 264 393
Base content (%) 34.2% 65.8%
12S rRNA gene (size: 934 bases) GC AT G C A T
Base content (bases) 340 594 184 156 238 356
Base content per 1 kb (bases) 364 636 197 167 255 381
Base content (%) 36.4% 63.6%
16S rRNA gene (size: 1601 bases) GC AT G C A T
Base content (bases) 528 1073 279 249 432 641
Base content per 1 kb (bases) 330 670 174 156 270 400
Base content (%) 33.0% 67.0%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 202 482 135 67 252 230
Base content per 1 kb (bases) 295 705 197 98 368 336
Base content (%) 29.5% 70.5%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 42 126 26 16 60 66
Base content per 1 kb (bases) 250 750 155 95 357 393
Base content (%) 25.0% 75.0%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 584 967 311 273 532 435
Base content per 1 kb (bases) 377 623 201 176 343 280
Base content (%) 37.7% 62.3%
COX2 (size: 687 bases) GC AT G C A T
Base content (bases) 230 457 137 93 223 234
Base content per 1 kb (bases) 335 665 199 135 325 341
Base content (%) 33.5% 66.5%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 292 493 165 127 259 234
Base content per 1 kb (bases) 372 628 210 162 330 298
Base content (%) 37.2% 62.8%
CYTB (size: 1142 bases) GC AT G C A T
Base content (bases) 423 719 267 156 378 341
Base content per 1 kb (bases) 370 630 234 137 331 299
Base content (%) 37.0% 63.0%
ND1 (size: 972 bases) GC AT G C A T
Base content (bases) 319 653 199 120 347 306
Base content per 1 kb (bases) 328 672 205 123 357 315
Base content (%) 32.8% 67.2%
ND2 (size: 1044 bases) GC AT G C A T
Base content (bases) 301 743 205 96 379 364
Base content per 1 kb (bases) 288 712 196 92 363 349
Base content (%) 28.8% 71.2%
ND3 (size: 351 bases) GC AT G C A T
Base content (bases) 124 227 76 48 123 104
Base content per 1 kb (bases) 353 647 217 137 350 296
Base content (%) 35.3% 64.7%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 449 929 295 154 464 465
Base content per 1 kb (bases) 326 674 214 112 337 337
Base content (%) 32.6% 67.4%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 97 200 61 36 109 91
Base content per 1 kb (bases) 327 673 205 121 367 306
Base content (%) 32.7% 67.3%
ND5 (size: 1814 bases) GC AT G C A T
Base content (bases) 591 1223 370 221 626 597
Base content per 1 kb (bases) 326 674 204 122 345 329
Base content (%) 32.6% 67.4%
ND6 (size: 519 bases) GC AT G C A T
Base content (bases) 180 339 121 59 114 225
Base content per 1 kb (bases) 347 653 233 114 220 434
Base content (%) 34.7% 65.3%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.41%)
Alanine (Ala, A)
n = 15 (6.61%)
Serine (Ser, S)
n = 9 (3.96%)
Threonine (Thr, T)
n = 19 (8.37%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (4.41%)
Leucine (Leu, L)
n = 53 (23.35%)
Isoleucine (Ile, I)
n = 19 (8.37%)
Methionine (Met, M)
n = 18 (7.93%)
Proline (Pro, P)
n = 16 (7.05%)
Phenylalanine (Phe, F)
n = 14 (6.17%)
Tyrosine (Tyr, Y)
n = 4 (1.76%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 11 (4.85%)
Glutamine (Gln, Q)
n = 9 (3.96%)
Histidine (His, H)
n = 2 (0.88%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 4 (1.76%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 2 16 10 2 11 0 30 9 0 4 1 5 0 12 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 7 3 5 0 2 3 5 0 5 0 11 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 9 1 2 1 2 0 1 3 2 2 0 0 9 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 4 0 0 1 3 1 0 1 3 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
40 54 75 59
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
23 55 36 114
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 26 119 79
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPGPWFAIFLMSWIVFLLILTFKISNFNNLNEPTMQNKNVKKPESWIWPWI*
Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.82%)
Alanine (Ala, A)
n = 1 (1.82%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 2 (3.64%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (3.64%)
Leucine (Leu, L)
n = 6 (10.91%)
Isoleucine (Ile, I)
n = 6 (10.91%)
Methionine (Met, M)
n = 3 (5.45%)
Proline (Pro, P)
n = 6 (10.91%)
Phenylalanine (Phe, F)
n = 5 (9.09%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 2 (3.64%)
Asparagine (Asn, N)
n = 7 (12.73%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 4 (7.27%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 1 2 0 0 2 0 4 2 0 0 1 1 0 5 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 1 0 0 0 0 0 0 1 2 1 3 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 1 0 1 0 1 0 0 0 0 0 5 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 1 0 0 4 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
6 10 23 17
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
7 11 16 22
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 5 27 21
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 40 (7.75%)
Serine (Ser, S)
n = 39 (7.56%)
Threonine (Thr, T)
n = 36 (6.98%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 39 (7.56%)
Leucine (Leu, L)
n = 61 (11.82%)
Isoleucine (Ile, I)
n = 39 (7.56%)
Methionine (Met, M)
n = 30 (5.81%)
Proline (Pro, P)
n = 26 (5.04%)
Phenylalanine (Phe, F)
n = 39 (7.56%)
Tyrosine (Tyr, Y)
n = 20 (3.88%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
31 8 27 12 2 15 0 31 5 2 14 4 18 3 31 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 10 12 16 2 9 8 18 12 6 7 9 4 15
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 17 0 5 4 19 6 2 3 17 3 4 1 9 6 10
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 7 3 8 7 6 2 1 0 6 1 0 0 0 1 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
151 89 133 144
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 136 95 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
44 86 207 180
COX2 (size: 687 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.51%)
Alanine (Ala, A)
n = 16 (7.02%)
Serine (Ser, S)
n = 16 (7.02%)
Threonine (Thr, T)
n = 14 (6.14%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 12 (5.26%)
Leucine (Leu, L)
n = 24 (10.53%)
Isoleucine (Ile, I)
n = 22 (9.65%)
Methionine (Met, M)
n = 17 (7.46%)
Proline (Pro, P)
n = 14 (6.14%)
Phenylalanine (Phe, F)
n = 10 (4.39%)
Tyrosine (Tyr, Y)
n = 9 (3.95%)
Tryptophan (Trp, W)
n = 5 (2.19%)
Aspartic acid (Asp, D)
n = 11 (4.82%)
Glutamic acid (Glu, E)
n = 13 (5.7%)
Asparagine (Asn, N)
n = 9 (3.95%)
Glutamine (Gln, Q)
n = 9 (3.95%)
Histidine (His, H)
n = 8 (3.51%)
Lysine (Lys, K)
n = 3 (1.32%)
Arginine (Arg, R)
n = 6 (2.63%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 2 16 3 2 5 0 14 8 1 3 0 9 0 9 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 2 4 3 8 1 3 1 4 0 4 3 6 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 8 0 4 3 6 0 1 2 6 3 1 0 6 3 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 9 4 8 3 3 0 4 0 2 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
60 47 68 54
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
24 57 63 85
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 33 103 84
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 19 (7.31%)
Serine (Ser, S)
n = 15 (5.77%)
Threonine (Thr, T)
n = 18 (6.92%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 17 (6.54%)
Leucine (Leu, L)
n = 28 (10.77%)
Isoleucine (Ile, I)
n = 18 (6.92%)
Methionine (Met, M)
n = 15 (5.77%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 26 (10.0%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 6 (2.31%)
Glutamic acid (Glu, E)
n = 9 (3.46%)
Asparagine (Asn, N)
n = 3 (1.15%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 14 (5.38%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 6 14 5 4 7 0 11 7 1 6 1 10 0 21 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 2 3 6 10 0 3 3 12 3 4 2 6 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 12 1 2 1 9 0 1 2 7 4 3 1 2 1 9
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 7 2 2 4 2 0 0 0 5 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 55 59 75
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 61 53 104
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 49 121 79
CYTB (size: 1142 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (7.12%)
Alanine (Ala, A)
n = 25 (6.6%)
Serine (Ser, S)
n = 28 (7.39%)
Threonine (Thr, T)
n = 22 (5.8%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 16 (4.22%)
Leucine (Leu, L)
n = 49 (12.93%)
Isoleucine (Ile, I)
n = 40 (10.55%)
Methionine (Met, M)
n = 18 (4.75%)
Proline (Pro, P)
n = 23 (6.07%)
Phenylalanine (Phe, F)
n = 31 (8.18%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 9 (2.37%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 17 (4.49%)
Glutamine (Gln, Q)
n = 9 (2.37%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 9 (2.37%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 10 15 12 5 12 3 16 6 3 2 4 10 0 20 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 2 3 10 11 1 3 5 16 3 4 5 13 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 10 1 8 4 14 0 1 1 8 6 2 1 10 7 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 5 1 5 4 10 0 2 0 6 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
83 85 109 103
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 96 77 154
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 86 154 120
ND1 (size: 972 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (5.26%)
Alanine (Ala, A)
n = 22 (6.81%)
Serine (Ser, S)
n = 27 (8.36%)
Threonine (Thr, T)
n = 19 (5.88%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 14 (4.33%)
Leucine (Leu, L)
n = 57 (17.65%)
Isoleucine (Ile, I)
n = 34 (10.53%)
Methionine (Met, M)
n = 19 (5.88%)
Proline (Pro, P)
n = 21 (6.5%)
Phenylalanine (Phe, F)
n = 19 (5.88%)
Tyrosine (Tyr, Y)
n = 11 (3.41%)
Tryptophan (Trp, W)
n = 7 (2.17%)
Aspartic acid (Asp, D)
n = 3 (0.93%)
Glutamic acid (Glu, E)
n = 11 (3.41%)
Asparagine (Asn, N)
n = 16 (4.95%)
Glutamine (Gln, Q)
n = 7 (2.17%)
Histidine (His, H)
n = 3 (0.93%)
Lysine (Lys, K)
n = 7 (2.17%)
Arginine (Arg, R)
n = 8 (2.48%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
29 5 15 11 8 9 1 24 7 0 4 1 6 3 17 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 6 5 11 0 5 2 8 2 3 4 13 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 9 0 5 3 16 0 2 1 8 3 0 4 11 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 11 0 3 0 7 0 1 0 6 1 0 0 0 1 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 68 98 91
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
36 86 59 143
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 45 149 113
ND2 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.32%)
Alanine (Ala, A)
n = 20 (5.76%)
Serine (Ser, S)
n = 33 (9.51%)
Threonine (Thr, T)
n = 28 (8.07%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 4 (1.15%)
Leucine (Leu, L)
n = 67 (19.31%)
Isoleucine (Ile, I)
n = 33 (9.51%)
Methionine (Met, M)
n = 34 (9.8%)
Proline (Pro, P)
n = 17 (4.9%)
Phenylalanine (Phe, F)
n = 19 (5.48%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 17 (4.9%)
Glutamine (Gln, Q)
n = 8 (2.31%)
Histidine (His, H)
n = 10 (2.88%)
Lysine (Lys, K)
n = 11 (3.17%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 3 31 12 5 12 2 34 7 1 1 0 2 1 17 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 0 7 2 11 0 2 2 9 2 4 0 13 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 12 1 7 5 16 1 2 2 5 3 1 2 13 4 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 4 0 0 2 11 0 0 0 3 1 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
45 70 127 106
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
36 94 61 157
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 41 176 116
ND3 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.32%)
Alanine (Ala, A)
n = 20 (5.76%)
Serine (Ser, S)
n = 33 (9.51%)
Threonine (Thr, T)
n = 28 (8.07%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 4 (1.15%)
Leucine (Leu, L)
n = 67 (19.31%)
Isoleucine (Ile, I)
n = 33 (9.51%)
Methionine (Met, M)
n = 34 (9.8%)
Proline (Pro, P)
n = 17 (4.9%)
Phenylalanine (Phe, F)
n = 19 (5.48%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 17 (4.9%)
Glutamine (Gln, Q)
n = 8 (2.31%)
Histidine (His, H)
n = 10 (2.88%)
Lysine (Lys, K)
n = 11 (3.17%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
30 3 31 12 5 12 2 34 7 1 1 0 2 1 17 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 0 7 2 11 0 2 2 9 2 4 0 13 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 12 1 7 5 16 1 2 2 5 3 1 2 13 4 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 4 0 0 2 11 0 0 0 3 1 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
45 70 127 106
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
36 94 61 157
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 41 176 116
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (4.59%)
Alanine (Ala, A)
n = 33 (7.21%)
Serine (Ser, S)
n = 38 (8.3%)
Threonine (Thr, T)
n = 32 (6.99%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 12 (2.62%)
Leucine (Leu, L)
n = 87 (19.0%)
Isoleucine (Ile, I)
n = 47 (10.26%)
Methionine (Met, M)
n = 37 (8.08%)
Proline (Pro, P)
n = 24 (5.24%)
Phenylalanine (Phe, F)
n = 19 (4.15%)
Tyrosine (Tyr, Y)
n = 16 (3.49%)
Tryptophan (Trp, W)
n = 14 (3.06%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 11 (2.4%)
Asparagine (Asn, N)
n = 20 (4.37%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 9 (1.97%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
40 7 33 14 9 17 1 46 9 1 3 1 8 0 14 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 2 2 5 5 22 1 2 5 8 6 6 6 12 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 16 0 6 8 15 1 4 4 10 6 1 0 11 9 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 11 0 1 2 11 0 0 1 9 1 0 0 0 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
80 95 155 129
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
58 119 80 202
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 81 230 132
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 8 (8.16%)
Serine (Ser, S)
n = 11 (11.22%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 19 (19.39%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 10 (10.2%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 9 (9.18%)
Tyrosine (Tyr, Y)
n = 2 (2.04%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 1 (1.02%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 9 3 0 6 0 9 2 0 1 0 2 0 8 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 2 1 1 2 5 0 2 1 2 0 1 0 1 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 3 0 2 3 4 0 2 0 2 0 0 1 1 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 2 1 1 0 1 0 0 0 2 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
20 19 25 35
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
13 27 16 43
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 15 50 31
ND5 (size: 1814 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (4.64%)
Alanine (Ala, A)
n = 43 (7.13%)
Serine (Ser, S)
n = 52 (8.62%)
Threonine (Thr, T)
n = 44 (7.3%)
Cysteine (Cys, C)
n = 6 (1.0%)
Valine (Val, V)
n = 25 (4.15%)
Leucine (Leu, L)
n = 91 (15.09%)
Isoleucine (Ile, I)
n = 61 (10.12%)
Methionine (Met, M)
n = 37 (6.14%)
Proline (Pro, P)
n = 23 (3.81%)
Phenylalanine (Phe, F)
n = 47 (7.79%)
Tyrosine (Tyr, Y)
n = 13 (2.16%)
Tryptophan (Trp, W)
n = 13 (2.16%)
Aspartic acid (Asp, D)
n = 12 (1.99%)
Glutamic acid (Glu, E)
n = 13 (2.16%)
Asparagine (Asn, N)
n = 33 (5.47%)
Glutamine (Gln, Q)
n = 19 (3.15%)
Histidine (His, H)
n = 11 (1.82%)
Lysine (Lys, K)
n = 23 (3.81%)
Arginine (Arg, R)
n = 10 (1.66%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
44 17 30 18 6 22 1 41 18 1 5 5 14 1 36 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 4 2 4 11 27 1 3 4 14 7 8 2 13 0 16
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 15 1 11 6 23 1 5 6 9 4 4 3 21 12 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 11 2 8 4 21 2 3 1 5 1 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
121 110 209 164
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
68 151 124 261
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
32 109 263 200
ND6 (size: 519 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (11.05%)
Alanine (Ala, A)
n = 13 (7.56%)
Serine (Ser, S)
n = 15 (8.72%)
Threonine (Thr, T)
n = 5 (2.91%)
Cysteine (Cys, C)
n = 3 (1.74%)
Valine (Val, V)
n = 18 (10.47%)
Leucine (Leu, L)
n = 32 (18.6%)
Isoleucine (Ile, I)
n = 10 (5.81%)
Methionine (Met, M)
n = 5 (2.91%)
Proline (Pro, P)
n = 4 (2.33%)
Phenylalanine (Phe, F)
n = 14 (8.14%)
Tyrosine (Tyr, Y)
n = 12 (6.98%)
Tryptophan (Trp, W)
n = 5 (2.91%)
Aspartic acid (Asp, D)
n = 1 (0.58%)
Glutamic acid (Glu, E)
n = 6 (3.49%)
Asparagine (Asn, N)
n = 6 (3.49%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 4 (2.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 0 3 5 0 3 2 17 0 0 7 0 9 2 13 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 3 0 6 0 4 3 4 1 6 8 0 1 2 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 0 4 0 5 3 3 0 12 0 1 5 4 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 4 2 0 1 0 0 2 1 1 0 1 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
57 18 30 68
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 34 25 79
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 7 59 78
Total protein-coding genes (size: 11392 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 224 (5.9%)
Alanine (Ala, A)
n = 260 (6.85%)
Serine (Ser, S)
n = 296 (7.8%)
Threonine (Thr, T)
n = 253 (6.67%)
Cysteine (Cys, C)
n = 28 (0.74%)
Valine (Val, V)
n = 174 (4.59%)
Leucine (Leu, L)
n = 602 (15.87%)
Isoleucine (Ile, I)
n = 344 (9.07%)
Methionine (Met, M)
n = 248 (6.54%)
Proline (Pro, P)
n = 196 (5.17%)
Phenylalanine (Phe, F)
n = 259 (6.83%)
Tyrosine (Tyr, Y)
n = 123 (3.24%)
Tryptophan (Trp, W)
n = 112 (2.95%)
Aspartic acid (Asp, D)
n = 67 (1.77%)
Glutamic acid (Glu, E)
n = 99 (2.61%)
Asparagine (Asn, N)
n = 159 (4.19%)
Glutamine (Gln, Q)
n = 92 (2.42%)
Histidine (His, H)
n = 92 (2.42%)
Lysine (Lys, K)
n = 85 (2.24%)
Arginine (Arg, R)
n = 73 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
276 68 215 110 47 126 11 287 81 11 50 18 96 10 208 51
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
33 15 13 58 60 133 9 39 35 103 47 47 33 106 10 85
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
48 115 5 59 38 137 12 25 25 89 34 17 21 104 55 48
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
44 82 17 36 31 80 5 13 4 50 6 1 0 6 2 95
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
824 747 1140 1084
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
488 955 725 1627
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
216 604 1713 1262 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​H​y​n​o​b​i​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ l​e​e​c​h​i​i​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.