Viewing data for Cynopterus brachyotis


Scientific name Cynopterus brachyotis
Common name Lesser short-nosed fruit bat
Maximum lifespan 10.10 years (Cynopterus brachyotis@AnAge)

Total mtDNA (size: 16701 bases) GC AT G C A T
Base content (bases) 6995 9706 4630 2365 4293 5413
Base content per 1 kb (bases) 419 581 277 142 257 324
Base content (%) 41.9% 58.1%
Total protein-coding genes (size: 11352 bases) GC AT G C A T
Base content (bases) 4791 6561 3346 1445 3020 3541
Base content per 1 kb (bases) 422 578 295 127 266 312
Base content (%) 42.2% 57.8%
D-loop (size: 1239 bases) GC AT G C A T
Base content (bases) 557 682 368 189 286 396
Base content per 1 kb (bases) 450 550 297 153 231 320
Base content (%) 45.0% 55.0%
Total tRNA-coding genes (size: 1514 bases) GC AT G C A T
Base content (bases) 581 933 336 245 411 522
Base content per 1 kb (bases) 384 616 222 162 271 345
Base content (%) 38.4% 61.6%
Total rRNA-coding genes (size: 2539 bases) GC AT G C A T
Base content (bases) 1035 1504 560 475 570 934
Base content per 1 kb (bases) 408 592 221 187 224 368
Base content (%) 40.8% 59.2%
12S rRNA gene (size: 968 bases) GC AT G C A T
Base content (bases) 414 554 223 191 207 347
Base content per 1 kb (bases) 428 572 230 197 214 358
Base content (%) 42.8% 57.2%
16S rRNA gene (size: 1571 bases) GC AT G C A T
Base content (bases) 621 950 337 284 363 587
Base content per 1 kb (bases) 395 605 215 181 231 374
Base content (%) 39.5% 60.5%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 287 394 212 75 184 210
Base content per 1 kb (bases) 421 579 311 110 270 308
Base content (%) 42.1% 57.9%
ATP8 (size: 204 bases) GC AT G C A T
Base content (bases) 71 133 57 14 56 77
Base content per 1 kb (bases) 348 652 279 69 275 377
Base content (%) 34.8% 65.2%
COX1 (size: 1545 bases) GC AT G C A T
Base content (bases) 694 851 423 271 451 400
Base content per 1 kb (bases) 449 551 274 175 292 259
Base content (%) 44.9% 55.1%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 297 387 202 95 168 219
Base content per 1 kb (bases) 434 566 295 139 246 320
Base content (%) 43.4% 56.6%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 350 435 230 120 223 212
Base content per 1 kb (bases) 446 554 293 153 284 270
Base content (%) 44.6% 55.4%
CYTB (size: 1140 bases) GC AT G C A T
Base content (bases) 491 649 332 159 310 339
Base content per 1 kb (bases) 431 569 291 139 272 297
Base content (%) 43.1% 56.9%
ND1 (size: 956 bases) GC AT G C A T
Base content (bases) 419 537 296 123 253 284
Base content per 1 kb (bases) 438 562 310 129 265 297
Base content (%) 43.8% 56.2%
ND2 (size: 1043 bases) GC AT G C A T
Base content (bases) 403 640 302 101 268 372
Base content per 1 kb (bases) 386 614 290 97 257 357
Base content (%) 38.6% 61.4%
ND3 (size: 348 bases) GC AT G C A T
Base content (bases) 147 201 102 45 97 104
Base content per 1 kb (bases) 422 578 293 129 279 299
Base content (%) 42.2% 57.8%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 563 815 407 156 362 453
Base content per 1 kb (bases) 409 591 295 113 263 329
Base content (%) 40.9% 59.1%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 124 173 83 41 90 83
Base content per 1 kb (bases) 418 582 279 138 303 279
Base content (%) 41.8% 58.2%
ND5 (size: 1818 bases) GC AT G C A T
Base content (bases) 751 1067 544 207 471 596
Base content per 1 kb (bases) 413 587 299 114 259 328
Base content (%) 41.3% 58.7%
ND6 (size: 528 bases) GC AT G C A T
Base content (bases) 210 318 169 41 105 213
Base content per 1 kb (bases) 398 602 320 78 199 403
Base content (%) 39.8% 60.2%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.87%)
Alanine (Ala, A)
n = 16 (7.08%)
Serine (Ser, S)
n = 13 (5.75%)
Threonine (Thr, T)
n = 25 (11.06%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 7 (3.1%)
Leucine (Leu, L)
n = 45 (19.91%)
Isoleucine (Ile, I)
n = 28 (12.39%)
Methionine (Met, M)
n = 11 (4.87%)
Proline (Pro, P)
n = 13 (5.75%)
Phenylalanine (Phe, F)
n = 12 (5.31%)
Tyrosine (Tyr, Y)
n = 2 (0.88%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 12 (5.31%)
Glutamine (Gln, Q)
n = 8 (3.54%)
Histidine (His, H)
n = 8 (3.54%)
Lysine (Lys, K)
n = 4 (1.77%)
Arginine (Arg, R)
n = 4 (1.77%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 13 7 7 11 16 6 4 8 0 2 2 2 1 4 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 2 6 8 0 2 3 6 0 2 4 6 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 15 1 3 3 3 0 2 2 0 2 0 1 2 10 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 2 1 1 0 4 0 1 1 2 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
38 73 84 32
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
22 63 39 103
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 76 87 49
ATP8 (size: 204 bases)
Amino acid sequence: MPQLDTSTWFITILSMILTLYIIMQVKISKHSYYQSPEPAITKTTKHKSPWESKWTKIYSPLSLPQH*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.49%)
Serine (Ser, S)
n = 9 (13.43%)
Threonine (Thr, T)
n = 8 (11.94%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.49%)
Leucine (Leu, L)
n = 6 (8.96%)
Isoleucine (Ile, I)
n = 8 (11.94%)
Methionine (Met, M)
n = 3 (4.48%)
Proline (Pro, P)
n = 6 (8.96%)
Phenylalanine (Phe, F)
n = 1 (1.49%)
Tyrosine (Tyr, Y)
n = 4 (5.97%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 1 (1.49%)
Glutamic acid (Glu, E)
n = 2 (2.99%)
Asparagine (Asn, N)
n = 0 (0%)
Glutamine (Gln, Q)
n = 4 (5.97%)
Histidine (His, H)
n = 3 (4.48%)
Lysine (Lys, K)
n = 7 (10.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 3 2 2 2 0 0 2 3 1 0 1 0 0 1 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 0 1 0 0 0 0 0 3 1 2 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 5 1 3 3 2 0 0 1 2 2 0 0 0 0 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 1 1 0 1 6 1 0 0 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
5 17 27 19
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
4 23 22 19
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 17 28 18
COX1 (size: 1545 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.14%)
Alanine (Ala, A)
n = 41 (7.98%)
Serine (Ser, S)
n = 34 (6.61%)
Threonine (Thr, T)
n = 35 (6.81%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 37 (7.2%)
Leucine (Leu, L)
n = 63 (12.26%)
Isoleucine (Ile, I)
n = 37 (7.2%)
Methionine (Met, M)
n = 29 (5.64%)
Proline (Pro, P)
n = 29 (5.64%)
Phenylalanine (Phe, F)
n = 42 (8.17%)
Tyrosine (Tyr, Y)
n = 19 (3.7%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 14 (2.72%)
Glutamic acid (Glu, E)
n = 10 (1.95%)
Asparagine (Asn, N)
n = 18 (3.5%)
Glutamine (Gln, Q)
n = 6 (1.17%)
Histidine (His, H)
n = 18 (3.5%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 16 22 9 13 18 13 7 5 1 13 7 15 2 13 29
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 1 10 19 11 1 4 14 21 8 8 10 10 1 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 16 0 4 12 13 2 2 1 12 7 2 3 6 12 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 4 6 4 10 9 0 1 0 7 0 0 0 1 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
149 114 131 121
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 136 95 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
46 173 174 122
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 8 (3.52%)
Serine (Ser, S)
n = 20 (8.81%)
Threonine (Thr, T)
n = 18 (7.93%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 12 (5.29%)
Leucine (Leu, L)
n = 34 (14.98%)
Isoleucine (Ile, I)
n = 18 (7.93%)
Methionine (Met, M)
n = 15 (6.61%)
Proline (Pro, P)
n = 13 (5.73%)
Phenylalanine (Phe, F)
n = 9 (3.96%)
Tyrosine (Tyr, Y)
n = 10 (4.41%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 11 (4.85%)
Glutamic acid (Glu, E)
n = 14 (6.17%)
Asparagine (Asn, N)
n = 5 (2.2%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 7 (3.08%)
Lysine (Lys, K)
n = 5 (2.2%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 10 12 4 5 16 1 7 5 2 1 4 5 2 1 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 1 1 1 6 0 0 4 3 1 2 6 4 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 7 0 0 12 3 0 1 4 5 5 1 1 2 3 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 12 2 1 10 3 2 0 1 5 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
53 59 66 50
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 54 60 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 89 93 30
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 14 (5.38%)
Serine (Ser, S)
n = 22 (8.46%)
Threonine (Thr, T)
n = 21 (8.08%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 15 (5.77%)
Leucine (Leu, L)
n = 35 (13.46%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 25 (9.62%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 6 (2.31%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 4 (1.54%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 6 6 6 7 15 5 2 6 1 1 4 9 1 9 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 0 3 8 3 0 2 10 6 2 3 4 5 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 10 1 5 1 10 1 3 2 6 5 1 0 3 3 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 7 1 1 2 3 1 1 0 4 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
60 74 58 69
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 64 56 97
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 92 97 56
CYTB (size: 1140 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.33%)
Alanine (Ala, A)
n = 25 (6.6%)
Serine (Ser, S)
n = 23 (6.07%)
Threonine (Thr, T)
n = 21 (5.54%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 20 (5.28%)
Leucine (Leu, L)
n = 67 (17.68%)
Isoleucine (Ile, I)
n = 34 (8.97%)
Methionine (Met, M)
n = 16 (4.22%)
Proline (Pro, P)
n = 23 (6.07%)
Phenylalanine (Phe, F)
n = 25 (6.6%)
Tyrosine (Tyr, Y)
n = 15 (3.96%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 12 (3.17%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 16 (4.22%)
Glutamine (Gln, Q)
n = 7 (1.85%)
Histidine (His, H)
n = 13 (3.43%)
Lysine (Lys, K)
n = 8 (2.11%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 23 13 10 14 33 4 5 7 0 0 7 9 4 13 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 2 2 11 12 0 1 6 14 3 2 4 16 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 13 1 3 8 9 0 1 2 6 9 0 1 5 11 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 6 0 3 9 7 1 0 0 7 1 0 1 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
87 112 99 82
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
52 89 77 162
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 131 163 66
ND1 (size: 956 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.79%)
Alanine (Ala, A)
n = 30 (9.46%)
Serine (Ser, S)
n = 23 (7.26%)
Threonine (Thr, T)
n = 21 (6.62%)
Cysteine (Cys, C)
n = 1 (0.32%)
Valine (Val, V)
n = 14 (4.42%)
Leucine (Leu, L)
n = 60 (18.93%)
Isoleucine (Ile, I)
n = 27 (8.52%)
Methionine (Met, M)
n = 20 (6.31%)
Proline (Pro, P)
n = 22 (6.94%)
Phenylalanine (Phe, F)
n = 17 (5.36%)
Tyrosine (Tyr, Y)
n = 11 (3.47%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.95%)
Glutamic acid (Glu, E)
n = 11 (3.47%)
Asparagine (Asn, N)
n = 12 (3.79%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 4 (1.26%)
Lysine (Lys, K)
n = 7 (2.21%)
Arginine (Arg, R)
n = 8 (2.52%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 15 16 3 14 29 4 9 5 1 1 2 9 2 3 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 7 11 12 0 0 5 3 4 1 13 8 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 8 3 2 11 7 0 0 3 6 5 1 1 8 4 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 11 0 0 3 7 0 0 1 7 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 90 90 68
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 93 54 138
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 113 139 46
ND2 (size: 1043 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 21 (6.07%)
Serine (Ser, S)
n = 27 (7.8%)
Threonine (Thr, T)
n = 41 (11.85%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 10 (2.89%)
Leucine (Leu, L)
n = 64 (18.5%)
Isoleucine (Ile, I)
n = 37 (10.69%)
Methionine (Met, M)
n = 28 (8.09%)
Proline (Pro, P)
n = 22 (6.36%)
Phenylalanine (Phe, F)
n = 12 (3.47%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 15 (4.34%)
Glutamine (Gln, Q)
n = 10 (2.89%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 20 24 6 9 30 5 12 10 0 1 1 8 0 6 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 3 11 7 0 1 4 7 2 2 8 12 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 26 1 3 5 14 2 1 2 1 6 0 2 4 11 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 4 1 0 1 11 2 0 1 2 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
51 91 137 68
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 108 57 151
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 103 177 48
ND3 (size: 1043 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 21 (6.07%)
Serine (Ser, S)
n = 27 (7.8%)
Threonine (Thr, T)
n = 41 (11.85%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 10 (2.89%)
Leucine (Leu, L)
n = 64 (18.5%)
Isoleucine (Ile, I)
n = 37 (10.69%)
Methionine (Met, M)
n = 28 (8.09%)
Proline (Pro, P)
n = 22 (6.36%)
Phenylalanine (Phe, F)
n = 12 (3.47%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 15 (4.34%)
Glutamine (Gln, Q)
n = 10 (2.89%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 20 24 6 9 30 5 12 10 0 1 1 8 0 6 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 3 11 7 0 1 4 7 2 2 8 12 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 26 1 3 5 14 2 1 2 1 6 0 2 4 11 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 4 1 0 1 11 2 0 1 2 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
51 91 137 68
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 108 57 151
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 103 177 48
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (4.15%)
Alanine (Ala, A)
n = 29 (6.33%)
Serine (Ser, S)
n = 40 (8.73%)
Threonine (Thr, T)
n = 41 (8.95%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 15 (3.28%)
Leucine (Leu, L)
n = 88 (19.21%)
Isoleucine (Ile, I)
n = 42 (9.17%)
Methionine (Met, M)
n = 38 (8.3%)
Proline (Pro, P)
n = 22 (4.8%)
Phenylalanine (Phe, F)
n = 15 (3.28%)
Tyrosine (Tyr, Y)
n = 18 (3.93%)
Tryptophan (Trp, W)
n = 13 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 22 (4.8%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 9 (1.97%)
Lysine (Lys, K)
n = 12 (2.62%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 18 32 7 17 43 6 9 9 2 4 1 10 0 5 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 2 1 0 17 11 1 2 7 10 0 2 7 12 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
20 18 0 4 14 11 1 1 9 7 11 0 6 6 16 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 7 2 0 3 11 1 1 1 8 0 0 0 0 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 125 165 94
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
55 122 84 198
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
26 160 204 69
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 8 (8.16%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 5 (5.1%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 7 (7.14%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 7 (7.14%)
Methionine (Met, M)
n = 11 (11.22%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 3 (3.06%)
Tyrosine (Tyr, Y)
n = 3 (3.06%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 5 (5.1%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 3 (3.06%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 2 8 2 2 14 3 1 2 0 2 2 2 1 1 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 2 2 3 3 0 1 3 0 0 0 0 1 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 2 2 1 7 0 0 1 0 2 1 0 1 1 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 2 0 0 1 0 0 0 0 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
22 28 29 20
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
9 22 17 51
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 33 37 19
ND5 (size: 1818 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (4.63%)
Alanine (Ala, A)
n = 41 (6.78%)
Serine (Ser, S)
n = 48 (7.93%)
Threonine (Thr, T)
n = 60 (9.92%)
Cysteine (Cys, C)
n = 4 (0.66%)
Valine (Val, V)
n = 21 (3.47%)
Leucine (Leu, L)
n = 96 (15.87%)
Isoleucine (Ile, I)
n = 52 (8.6%)
Methionine (Met, M)
n = 43 (7.11%)
Proline (Pro, P)
n = 26 (4.3%)
Phenylalanine (Phe, F)
n = 42 (6.94%)
Tyrosine (Tyr, Y)
n = 16 (2.64%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 10 (1.65%)
Glutamic acid (Glu, E)
n = 11 (1.82%)
Asparagine (Asn, N)
n = 33 (5.45%)
Glutamine (Gln, Q)
n = 21 (3.47%)
Histidine (His, H)
n = 10 (1.65%)
Lysine (Lys, K)
n = 22 (3.64%)
Arginine (Arg, R)
n = 9 (1.49%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 31 35 11 21 47 5 9 19 2 2 4 13 2 14 28
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 1 3 6 18 17 0 1 11 13 3 4 10 11 1 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
28 22 1 5 13 16 2 1 11 5 11 2 3 7 26 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 10 1 5 5 21 1 0 3 6 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
111 150 222 123
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
65 163 124 254
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
31 231 250 94
ND6 (size: 528 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (14.86%)
Alanine (Ala, A)
n = 5 (2.86%)
Serine (Ser, S)
n = 13 (7.43%)
Threonine (Thr, T)
n = 7 (4.0%)
Cysteine (Cys, C)
n = 1 (0.57%)
Valine (Val, V)
n = 28 (16.0%)
Leucine (Leu, L)
n = 18 (10.29%)
Isoleucine (Ile, I)
n = 13 (7.43%)
Methionine (Met, M)
n = 14 (8.0%)
Proline (Pro, P)
n = 3 (1.71%)
Phenylalanine (Phe, F)
n = 11 (6.29%)
Tyrosine (Tyr, Y)
n = 11 (6.29%)
Tryptophan (Trp, W)
n = 4 (2.29%)
Aspartic acid (Asp, D)
n = 6 (3.43%)
Glutamic acid (Glu, E)
n = 8 (4.57%)
Asparagine (Asn, N)
n = 3 (1.71%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.57%)
Lysine (Lys, K)
n = 2 (1.14%)
Arginine (Arg, R)
n = 1 (0.57%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 1 6 0 0 1 1 5 0 0 14 0 4 10 11 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 1 0 1 0 2 2 8 1 2 15 2 0 0 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 2 1 3 3 1 1 4 1 7 4 2 11 3 0 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 6 5 1 1 1 1 0 0 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 7 44 52
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 23 32 84
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
59 11 29 77
Total protein-coding genes (size: 11407 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 217 (5.71%)
Alanine (Ala, A)
n = 249 (6.55%)
Serine (Ser, S)
n = 292 (7.69%)
Threonine (Thr, T)
n = 307 (8.08%)
Cysteine (Cys, C)
n = 23 (0.61%)
Valine (Val, V)
n = 189 (4.97%)
Leucine (Leu, L)
n = 623 (16.4%)
Isoleucine (Ile, I)
n = 325 (8.55%)
Methionine (Met, M)
n = 246 (6.48%)
Proline (Pro, P)
n = 198 (5.21%)
Phenylalanine (Phe, F)
n = 221 (5.82%)
Tyrosine (Tyr, Y)
n = 130 (3.42%)
Tryptophan (Trp, W)
n = 104 (2.74%)
Aspartic acid (Asp, D)
n = 69 (1.82%)
Glutamic acid (Glu, E)
n = 95 (2.5%)
Asparagine (Asn, N)
n = 151 (3.97%)
Glutamine (Gln, Q)
n = 91 (2.4%)
Histidine (His, H)
n = 100 (2.63%)
Lysine (Lys, K)
n = 97 (2.55%)
Arginine (Arg, R)
n = 64 (1.68%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
161 164 192 75 119 268 57 74 81 10 41 35 87 26 83 138
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
54 10 13 39 110 96 4 22 70 87 38 32 70 89 7 39
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
109 147 12 36 97 91 10 17 41 59 71 9 30 50 101 24
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
76 74 21 21 48 87 10 5 9 49 1 0 1 8 0 95
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
819 972 1185 824
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
467 988 741 1604
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
290 1271 1525 714 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​C​y​n​o​p​t​e​r​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ b​r​a​c​h​y​o​t​i​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.