Viewing data for Galaxiella nigrostriata


Scientific name Galaxiella nigrostriata
Common name Black-stripe minnow
Maximum lifespan 1.00 years (Galaxiella nigrostriata@AnAge)

Total mtDNA (size: 19017 bases) GC AT G C A T
Base content (bases) 7623 11394 4590 3033 5915 5479
Base content per 1 kb (bases) 401 599 241 159 311 288
Base content (%) 40.1% 59.9%
Total protein-coding genes (size: 11480 bases) GC AT G C A T
Base content (bases) 4523 6957 2841 1682 3785 3172
Base content per 1 kb (bases) 394 606 247 147 330 276
Base content (%) 39.4% 60.6%
D-loop (size: 881 bases) GC AT G C A T
Base content (bases) 335 546 189 146 273 273
Base content per 1 kb (bases) 380 620 215 166 310 310
Base content (%) 38.0% 62.0%
Total tRNA-coding genes (size: 1552 bases) GC AT G C A T
Base content (bases) 658 894 369 289 408 486
Base content per 1 kb (bases) 424 576 238 186 263 313
Base content (%) 42.4% 57.6%
Total rRNA-coding genes (size: 2613 bases) GC AT G C A T
Base content (bases) 1119 1494 585 534 626 868
Base content per 1 kb (bases) 428 572 224 204 240 332
Base content (%) 42.8% 57.2%
12S rRNA gene (size: 943 bases) GC AT G C A T
Base content (bases) 424 519 221 203 216 303
Base content per 1 kb (bases) 450 550 234 215 229 321
Base content (%) 45.0% 55.0%
16S rRNA gene (size: 1670 bases) GC AT G C A T
Base content (bases) 695 975 364 331 410 565
Base content per 1 kb (bases) 416 584 218 198 246 338
Base content (%) 41.6% 58.4%

ATP6 (size: 683 bases) GC AT G C A T
Base content (bases) 256 427 168 88 232 195
Base content per 1 kb (bases) 375 625 246 129 340 286
Base content (%) 37.5% 62.5%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 66 102 48 18 52 50
Base content per 1 kb (bases) 393 607 286 107 310 298
Base content (%) 39.3% 60.7%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 638 913 355 283 520 393
Base content per 1 kb (bases) 411 589 229 182 335 253
Base content (%) 41.1% 58.9%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 279 412 163 116 216 196
Base content per 1 kb (bases) 404 596 236 168 313 284
Base content (%) 40.4% 59.6%
COX3 (size: 786 bases) GC AT G C A T
Base content (bases) 331 455 204 127 259 196
Base content per 1 kb (bases) 421 579 260 162 330 249
Base content (%) 42.1% 57.9%
CYTB (size: 1137 bases) GC AT G C A T
Base content (bases) 437 700 259 178 395 305
Base content per 1 kb (bases) 384 616 228 157 347 268
Base content (%) 38.4% 61.6%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 377 598 238 139 345 253
Base content per 1 kb (bases) 387 613 244 143 354 259
Base content (%) 38.7% 61.3%
ND2 (size: 1048 bases) GC AT G C A T
Base content (bases) 411 637 281 130 346 291
Base content per 1 kb (bases) 392 608 268 124 330 278
Base content (%) 39.2% 60.8%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 131 218 81 50 127 91
Base content per 1 kb (bases) 375 625 232 143 364 261
Base content (%) 37.5% 62.5%
ND4 (size: 1458 bases) GC AT G C A T
Base content (bases) 566 892 356 210 488 404
Base content per 1 kb (bases) 388 612 244 144 335 277
Base content (%) 38.8% 61.2%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 130 167 86 44 101 66
Base content per 1 kb (bases) 438 562 290 148 340 222
Base content (%) 43.8% 56.2%
ND5 (size: 1836 bases) GC AT G C A T
Base content (bases) 694 1142 450 244 603 539
Base content per 1 kb (bases) 378 622 245 133 328 294
Base content (%) 37.8% 62.2%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 212 310 154 58 108 202
Base content per 1 kb (bases) 406 594 295 111 207 387
Base content (%) 40.6% 59.4%

ATP6 (size: 683 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.98%)
Alanine (Ala, A)
n = 21 (9.29%)
Serine (Ser, S)
n = 10 (4.42%)
Threonine (Thr, T)
n = 22 (9.73%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 12 (5.31%)
Leucine (Leu, L)
n = 48 (21.24%)
Isoleucine (Ile, I)
n = 21 (9.29%)
Methionine (Met, M)
n = 15 (6.64%)
Proline (Pro, P)
n = 16 (7.08%)
Phenylalanine (Phe, F)
n = 13 (5.75%)
Tyrosine (Tyr, Y)
n = 4 (1.77%)
Tryptophan (Trp, W)
n = 5 (2.21%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.77%)
Asparagine (Asn, N)
n = 7 (3.1%)
Glutamine (Gln, Q)
n = 8 (3.54%)
Histidine (His, H)
n = 3 (1.33%)
Lysine (Lys, K)
n = 2 (0.88%)
Arginine (Arg, R)
n = 6 (2.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 4 12 15 2 11 4 16 7 1 2 0 8 2 12 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 6 8 6 1 2 5 2 0 5 5 5 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 10 2 0 3 1 0 3 3 4 0 0 0 5 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 4 0 0 1 1 1 1 1 4 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
47 65 73 42
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 63 29 109
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 40 92 80
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPSPWFIILTFSWLVLLTVIPPKVLGHTFPNEPTTQNTHKPKPGSWYWPWY*
Amino acid frequencies:
Glycine (Gly, G)
n = 2 (3.64%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 6 (10.91%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 3 (5.45%)
Leucine (Leu, L)
n = 6 (10.91%)
Isoleucine (Ile, I)
n = 3 (5.45%)
Methionine (Met, M)
n = 1 (1.82%)
Proline (Pro, P)
n = 10 (18.18%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 2 (3.64%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 1 (1.82%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 0 0 3 1 1 0 1 2 0 1 0 1 1 1 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 0 0 0 0 1 0 1 5 1 3 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 3 0 1 2 0 0 0 0 1 1 0 0 2 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 0 0 0 2 1 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
6 19 16 15
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
7 19 14 16
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 10 20 21
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 45 (8.72%)
Serine (Ser, S)
n = 31 (6.01%)
Threonine (Thr, T)
n = 37 (7.17%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 40 (7.75%)
Leucine (Leu, L)
n = 65 (12.6%)
Isoleucine (Ile, I)
n = 39 (7.56%)
Methionine (Met, M)
n = 23 (4.46%)
Proline (Pro, P)
n = 29 (5.62%)
Phenylalanine (Phe, F)
n = 41 (7.95%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 14 (2.71%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 14 (2.71%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 20 (3.88%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
34 5 18 18 7 7 4 25 5 3 14 6 15 5 31 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 1 16 11 15 3 14 13 13 7 4 9 12 4 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 19 1 10 3 11 2 0 5 11 7 5 4 5 9 9
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 7 4 6 8 8 0 0 2 5 1 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
157 101 126 133
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 137 94 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
48 117 173 179
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 17 (7.42%)
Serine (Ser, S)
n = 16 (6.99%)
Threonine (Thr, T)
n = 12 (5.24%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 19 (8.3%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 17 (7.42%)
Methionine (Met, M)
n = 13 (5.68%)
Proline (Pro, P)
n = 13 (5.68%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 13 (5.68%)
Asparagine (Asn, N)
n = 5 (2.18%)
Glutamine (Gln, Q)
n = 9 (3.93%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 5 (2.18%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 4 10 12 3 2 1 9 8 1 10 4 4 1 6 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 2 4 4 8 1 2 0 4 3 3 5 4 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 5 1 3 7 3 0 2 1 6 3 0 1 4 1 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 8 5 6 7 4 1 0 2 3 1 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 56 55 48
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 55 64 86
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 52 77 81
COX3 (size: 786 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.05%)
Alanine (Ala, A)
n = 22 (8.43%)
Serine (Ser, S)
n = 17 (6.51%)
Threonine (Thr, T)
n = 21 (8.05%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 15 (5.75%)
Leucine (Leu, L)
n = 32 (12.26%)
Isoleucine (Ile, I)
n = 14 (5.36%)
Methionine (Met, M)
n = 10 (3.83%)
Proline (Pro, P)
n = 12 (4.6%)
Phenylalanine (Phe, F)
n = 24 (9.2%)
Tyrosine (Tyr, Y)
n = 12 (4.6%)
Tryptophan (Trp, W)
n = 12 (4.6%)
Aspartic acid (Asp, D)
n = 4 (1.53%)
Glutamic acid (Glu, E)
n = 9 (3.45%)
Asparagine (Asn, N)
n = 2 (0.77%)
Glutamine (Gln, Q)
n = 8 (3.07%)
Histidine (His, H)
n = 16 (6.13%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 3 6 8 3 5 0 16 6 2 2 5 6 2 14 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 5 12 5 0 3 13 4 1 5 7 0 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 8 0 6 0 8 0 1 2 10 2 0 0 1 1 8
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 7 2 2 2 2 1 1 1 3 0 0 0 0 1 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 57 53 81
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 69 55 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 78 88 83
CYTB (size: 1137 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.88%)
Alanine (Ala, A)
n = 29 (7.67%)
Serine (Ser, S)
n = 28 (7.41%)
Threonine (Thr, T)
n = 20 (5.29%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 28 (7.41%)
Leucine (Leu, L)
n = 58 (15.34%)
Isoleucine (Ile, I)
n = 34 (8.99%)
Methionine (Met, M)
n = 7 (1.85%)
Proline (Pro, P)
n = 20 (5.29%)
Phenylalanine (Phe, F)
n = 29 (7.67%)
Tyrosine (Tyr, Y)
n = 16 (4.23%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 9 (2.38%)
Glutamic acid (Glu, E)
n = 6 (1.59%)
Asparagine (Asn, N)
n = 19 (5.03%)
Glutamine (Gln, Q)
n = 7 (1.85%)
Histidine (His, H)
n = 11 (2.91%)
Lysine (Lys, K)
n = 8 (2.12%)
Arginine (Arg, R)
n = 8 (2.12%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 10 4 14 3 18 2 18 5 2 6 5 14 3 25 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 2 6 9 13 1 7 6 11 2 7 7 4 2 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 6 2 7 2 14 0 2 3 9 7 1 3 11 8 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 4 2 3 6 7 1 1 0 5 2 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
98 83 93 105
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 92 77 156
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
26 84 135 134
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 35 (10.8%)
Serine (Ser, S)
n = 23 (7.1%)
Threonine (Thr, T)
n = 17 (5.25%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (4.32%)
Leucine (Leu, L)
n = 59 (18.21%)
Isoleucine (Ile, I)
n = 28 (8.64%)
Methionine (Met, M)
n = 12 (3.7%)
Proline (Pro, P)
n = 23 (7.1%)
Phenylalanine (Phe, F)
n = 24 (7.41%)
Tyrosine (Tyr, Y)
n = 12 (3.7%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 3 (0.93%)
Glutamic acid (Glu, E)
n = 12 (3.7%)
Asparagine (Asn, N)
n = 11 (3.4%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 3 (0.93%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 4 10 16 6 7 3 24 7 0 5 4 3 2 19 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 12 15 8 0 4 5 6 3 5 5 11 2 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 8 0 8 5 7 0 2 1 6 6 2 3 5 6 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 10 2 2 1 7 0 1 2 4 1 0 0 1 0 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
82 73 78 92
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 95 56 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 70 119 116
ND2 (size: 1048 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.89%)
Alanine (Ala, A)
n = 32 (9.2%)
Serine (Ser, S)
n = 29 (8.33%)
Threonine (Thr, T)
n = 43 (12.36%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 10 (2.87%)
Leucine (Leu, L)
n = 66 (18.97%)
Isoleucine (Ile, I)
n = 29 (8.33%)
Methionine (Met, M)
n = 22 (6.32%)
Proline (Pro, P)
n = 20 (5.75%)
Phenylalanine (Phe, F)
n = 18 (5.17%)
Tyrosine (Tyr, Y)
n = 7 (2.01%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 7 (2.01%)
Glutamine (Gln, Q)
n = 14 (4.02%)
Histidine (His, H)
n = 5 (1.44%)
Lysine (Lys, K)
n = 8 (2.3%)
Arginine (Arg, R)
n = 5 (1.44%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 5 18 17 6 15 2 23 12 2 5 3 1 1 12 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 10 14 8 0 3 6 4 4 4 10 6 0 19
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 9 0 6 4 8 1 6 4 5 2 2 3 3 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 5 0 0 0 6 2 2 0 2 1 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 84 119 82
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 114 46 145
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 83 126 118
ND3 (size: 1048 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.89%)
Alanine (Ala, A)
n = 32 (9.2%)
Serine (Ser, S)
n = 29 (8.33%)
Threonine (Thr, T)
n = 43 (12.36%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 10 (2.87%)
Leucine (Leu, L)
n = 66 (18.97%)
Isoleucine (Ile, I)
n = 29 (8.33%)
Methionine (Met, M)
n = 22 (6.32%)
Proline (Pro, P)
n = 20 (5.75%)
Phenylalanine (Phe, F)
n = 18 (5.17%)
Tyrosine (Tyr, Y)
n = 7 (2.01%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 7 (2.01%)
Glutamine (Gln, Q)
n = 14 (4.02%)
Histidine (His, H)
n = 5 (1.44%)
Lysine (Lys, K)
n = 8 (2.3%)
Arginine (Arg, R)
n = 5 (1.44%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 5 18 17 6 15 2 23 12 2 5 3 1 1 12 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 10 14 8 0 3 6 4 4 4 10 6 0 19
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 9 0 6 4 8 1 6 4 5 2 2 3 3 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 5 0 0 0 6 2 2 0 2 1 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 84 119 82
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 114 46 145
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 83 126 118
ND4 (size: 1458 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (4.95%)
Alanine (Ala, A)
n = 35 (7.22%)
Serine (Ser, S)
n = 33 (6.8%)
Threonine (Thr, T)
n = 39 (8.04%)
Cysteine (Cys, C)
n = 5 (1.03%)
Valine (Val, V)
n = 24 (4.95%)
Leucine (Leu, L)
n = 98 (20.21%)
Isoleucine (Ile, I)
n = 35 (7.22%)
Methionine (Met, M)
n = 28 (5.77%)
Proline (Pro, P)
n = 27 (5.57%)
Phenylalanine (Phe, F)
n = 21 (4.33%)
Tyrosine (Tyr, Y)
n = 14 (2.89%)
Tryptophan (Trp, W)
n = 18 (3.71%)
Aspartic acid (Asp, D)
n = 6 (1.24%)
Glutamic acid (Glu, E)
n = 14 (2.89%)
Asparagine (Asn, N)
n = 16 (3.3%)
Glutamine (Gln, Q)
n = 13 (2.68%)
Histidine (His, H)
n = 10 (2.06%)
Lysine (Lys, K)
n = 14 (2.89%)
Arginine (Arg, R)
n = 11 (2.27%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 11 21 22 16 20 5 34 11 2 10 2 9 3 15 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 3 2 12 13 9 1 7 9 5 3 12 7 7 1 14
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 13 0 12 3 9 0 3 6 10 4 4 1 8 8 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 8 6 4 2 10 4 3 2 5 1 0 1 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
103 124 142 117
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
68 125 87 206
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
39 107 175 165
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 6 (6.12%)
Alanine (Ala, A)
n = 11 (11.22%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 11 (11.22%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 6 (6.12%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 2 (2.04%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 4 (4.08%)
Histidine (His, H)
n = 3 (3.06%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 4 6 1 7 3 6 3 1 1 0 0 0 4 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 1 4 3 4 0 2 1 2 1 1 2 0 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 1 1 7 1 1 0 0 0 0 0 0 0 1 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 1 1 2 0 0 0 1 2 0 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
22 30 21 26
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
13 34 14 38
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 22 31 37
ND5 (size: 1836 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 33 (5.4%)
Alanine (Ala, A)
n = 52 (8.51%)
Serine (Ser, S)
n = 44 (7.2%)
Threonine (Thr, T)
n = 53 (8.67%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 26 (4.26%)
Leucine (Leu, L)
n = 97 (15.88%)
Isoleucine (Ile, I)
n = 58 (9.49%)
Methionine (Met, M)
n = 34 (5.56%)
Proline (Pro, P)
n = 32 (5.24%)
Phenylalanine (Phe, F)
n = 37 (6.06%)
Tyrosine (Tyr, Y)
n = 16 (2.62%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 11 (1.8%)
Glutamic acid (Glu, E)
n = 11 (1.8%)
Asparagine (Asn, N)
n = 25 (4.09%)
Glutamine (Gln, Q)
n = 18 (2.95%)
Histidine (His, H)
n = 15 (2.45%)
Lysine (Lys, K)
n = 19 (3.11%)
Arginine (Arg, R)
n = 10 (1.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
47 11 29 28 13 25 6 22 15 3 8 2 10 6 31 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 5 15 18 18 1 6 11 13 3 8 11 13 0 19
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 22 2 13 7 13 1 2 8 13 3 1 3 14 11 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 8 3 6 5 15 4 0 3 7 0 0 0 1 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
133 147 199 133
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
73 171 116 252
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
38 132 224 218
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 23 (13.29%)
Alanine (Ala, A)
n = 16 (9.25%)
Serine (Ser, S)
n = 16 (9.25%)
Threonine (Thr, T)
n = 2 (1.16%)
Cysteine (Cys, C)
n = 4 (2.31%)
Valine (Val, V)
n = 23 (13.29%)
Leucine (Leu, L)
n = 30 (17.34%)
Isoleucine (Ile, I)
n = 7 (4.05%)
Methionine (Met, M)
n = 9 (5.2%)
Proline (Pro, P)
n = 4 (2.31%)
Phenylalanine (Phe, F)
n = 10 (5.78%)
Tyrosine (Tyr, Y)
n = 8 (4.62%)
Tryptophan (Trp, W)
n = 4 (2.31%)
Aspartic acid (Asp, D)
n = 3 (1.73%)
Glutamic acid (Glu, E)
n = 6 (3.47%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 2 (1.16%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 4 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 0 6 3 0 3 1 15 2 0 8 1 8 6 9 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 2 5 1 7 3 5 1 6 11 1 1 1 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 3 1 5 1 6 0 8 0 0 8 0 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 5 3 0 1 0 2 0 0 2 0 0 0 1 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 17 26 60
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 32 22 79
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
42 9 60 63
Total protein-coding genes (size: 11501 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 241 (6.29%)
Alanine (Ala, A)
n = 322 (8.41%)
Serine (Ser, S)
n = 266 (6.94%)
Threonine (Thr, T)
n = 288 (7.52%)
Cysteine (Cys, C)
n = 28 (0.73%)
Valine (Val, V)
n = 219 (5.72%)
Leucine (Leu, L)
n = 637 (16.63%)
Isoleucine (Ile, I)
n = 298 (7.78%)
Methionine (Met, M)
n = 185 (4.83%)
Proline (Pro, P)
n = 217 (5.66%)
Phenylalanine (Phe, F)
n = 244 (6.37%)
Tyrosine (Tyr, Y)
n = 120 (3.13%)
Tryptophan (Trp, W)
n = 117 (3.05%)
Aspartic acid (Asp, D)
n = 71 (1.85%)
Glutamic acid (Glu, E)
n = 100 (2.61%)
Asparagine (Asn, N)
n = 114 (2.98%)
Glutamine (Gln, Q)
n = 103 (2.69%)
Histidine (His, H)
n = 98 (2.56%)
Lysine (Lys, K)
n = 79 (2.06%)
Arginine (Arg, R)
n = 76 (1.98%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
238 60 141 164 66 129 33 218 85 18 73 32 82 32 187 57
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
44 10 18 98 111 102 11 56 74 72 39 63 72 69 13 95
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
78 106 9 79 38 83 5 28 33 85 35 15 27 61 53 47
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
51 69 31 36 35 64 15 12 16 39 9 0 1 6 2 102
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
953 886 1026 967
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
524 1032 693 1583
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
304 829 1367 1332 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​G​a​l​a​x​i​e​l​l​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ n​i​g​r​o​s​t​r​i​a​t​a​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.