Viewing data for Osmerus mordax


Scientific name Osmerus mordax
Common name Rainbow smelt
Maximum lifespan 7.00 years (Osmerus mordax@AnAge)

Total mtDNA (size: 16620 bases) GC AT G C A T
Base content (bases) 8074 8546 4963 3111 4414 4132
Base content per 1 kb (bases) 486 514 299 187 266 249
Base content (%) 48.6% 51.4%
Total protein-coding genes (size: 11408 bases) GC AT G C A T
Base content (bases) 5608 5800 3620 1988 3185 2615
Base content per 1 kb (bases) 492 508 317 174 279 229
Base content (%) 49.2% 50.8%
D-loop (size: 939 bases) GC AT G C A T
Base content (bases) 402 537 241 161 278 259
Base content per 1 kb (bases) 428 572 257 171 296 276
Base content (%) 42.8% 57.2%
Total tRNA-coding genes (size: 1554 bases) GC AT G C A T
Base content (bases) 725 829 393 332 377 452
Base content per 1 kb (bases) 467 533 253 214 243 291
Base content (%) 46.7% 53.3%
Total rRNA-coding genes (size: 2651 bases) GC AT G C A T
Base content (bases) 1291 1360 679 612 564 796
Base content per 1 kb (bases) 487 513 256 231 213 300
Base content (%) 48.7% 51.3%
12S rRNA gene (size: 945 bases) GC AT G C A T
Base content (bases) 479 466 252 227 199 267
Base content per 1 kb (bases) 507 493 267 240 211 283
Base content (%) 50.7% 49.3%
16S rRNA gene (size: 1706 bases) GC AT G C A T
Base content (bases) 812 894 427 385 365 529
Base content per 1 kb (bases) 476 524 250 226 214 310
Base content (%) 47.6% 52.4%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 323 361 219 104 211 150
Base content per 1 kb (bases) 472 528 320 152 308 219
Base content (%) 47.2% 52.8%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 83 85 55 28 44 41
Base content per 1 kb (bases) 494 506 327 167 262 244
Base content (%) 49.4% 50.6%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 765 786 446 319 460 326
Base content per 1 kb (bases) 493 507 288 206 297 210
Base content (%) 49.3% 50.7%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 321 370 199 122 186 184
Base content per 1 kb (bases) 465 535 288 177 269 266
Base content (%) 46.5% 53.5%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 389 396 251 138 218 178
Base content per 1 kb (bases) 496 504 320 176 278 227
Base content (%) 49.6% 50.4%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 550 591 354 196 341 250
Base content per 1 kb (bases) 482 518 310 172 299 219
Base content (%) 48.2% 51.8%
ND1 (size: 971 bases) GC AT G C A T
Base content (bases) 489 482 314 175 283 199
Base content per 1 kb (bases) 504 496 323 180 291 205
Base content (%) 50.4% 49.6%
ND2 (size: 1051 bases) GC AT G C A T
Base content (bases) 538 513 360 178 281 232
Base content per 1 kb (bases) 512 488 343 169 267 221
Base content (%) 51.2% 48.8%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 179 170 115 64 109 61
Base content per 1 kb (bases) 513 487 330 183 312 175
Base content (%) 51.3% 48.7%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 669 712 432 237 386 326
Base content per 1 kb (bases) 484 516 313 172 280 236
Base content (%) 48.4% 51.6%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 154 143 100 54 85 58
Base content per 1 kb (bases) 519 481 337 182 286 195
Base content (%) 51.9% 48.1%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 872 967 587 285 524 443
Base content per 1 kb (bases) 474 526 319 155 285 241
Base content (%) 47.4% 52.6%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 282 240 192 90 62 178
Base content per 1 kb (bases) 540 460 368 172 119 341
Base content (%) 54.0% 46.0%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 18 (7.93%)
Serine (Ser, S)
n = 7 (3.08%)
Threonine (Thr, T)
n = 23 (10.13%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 16 (7.05%)
Leucine (Leu, L)
n = 53 (23.35%)
Isoleucine (Ile, I)
n = 17 (7.49%)
Methionine (Met, M)
n = 11 (4.85%)
Proline (Pro, P)
n = 17 (7.49%)
Phenylalanine (Phe, F)
n = 13 (5.73%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 9 (3.96%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 9 4 22 11 10 2 8 6 3 3 7 4 2 8 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 0 8 7 2 1 3 2 2 4 5 9 1 2 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 5 5 1 2 0 0 0 4 2 1 2 0 3 6 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 4 0 1 0 1 0 0 3 3 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
50 80 65 33
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 61 31 110
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
28 78 54 68
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFAILVFSWLVFLTCYPPKVLGHVFSNEPTVQSAEKANPESWNWPWH*
Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.82%)
Alanine (Ala, A)
n = 4 (7.27%)
Serine (Ser, S)
n = 4 (7.27%)
Threonine (Thr, T)
n = 2 (3.64%)
Cysteine (Cys, C)
n = 1 (1.82%)
Valine (Val, V)
n = 5 (9.09%)
Leucine (Leu, L)
n = 5 (9.09%)
Isoleucine (Ile, I)
n = 1 (1.82%)
Methionine (Met, M)
n = 1 (1.82%)
Proline (Pro, P)
n = 8 (14.55%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 1 (1.82%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 3 (5.45%)
Asparagine (Asn, N)
n = 4 (7.27%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 1 0 1 2 0 2 0 2 0 3 2 0 0 2 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 0 1 3 0 0 0 0 0 1 1 4 2 1 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 1 0 1 1 0 1 0 1 1 0 0 0 1 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 1 0 0 2 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
13 17 11 15
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
8 17 15 16
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 21 15 13
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 45 (8.72%)
Alanine (Ala, A)
n = 46 (8.91%)
Serine (Ser, S)
n = 30 (5.81%)
Threonine (Thr, T)
n = 36 (6.98%)
Cysteine (Cys, C)
n = 2 (0.39%)
Valine (Val, V)
n = 39 (7.56%)
Leucine (Leu, L)
n = 63 (12.21%)
Isoleucine (Ile, I)
n = 40 (7.75%)
Methionine (Met, M)
n = 26 (5.04%)
Proline (Pro, P)
n = 29 (5.62%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 14 (2.71%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
22 18 9 21 15 13 8 5 4 4 9 13 10 7 20 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
17 0 2 15 19 9 3 4 11 7 23 11 9 6 3 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 10 2 7 13 2 3 0 5 6 12 7 1 8 7 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 3 8 4 10 7 1 0 2 6 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
155 121 130 111
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 136 94 210
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
87 189 102 139
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 18 (7.86%)
Serine (Ser, S)
n = 16 (6.99%)
Threonine (Thr, T)
n = 8 (3.49%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 20 (8.73%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 20 (8.73%)
Methionine (Met, M)
n = 12 (5.24%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 8 (3.49%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 14 (6.11%)
Asparagine (Asn, N)
n = 5 (2.18%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 5 (2.18%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 9 5 8 7 7 3 3 8 0 3 5 8 4 3 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 2 5 7 3 3 1 4 3 1 6 6 2 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 3 0 4 8 1 0 0 3 5 4 0 0 2 3 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 11 3 1 12 4 1 0 1 4 1 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 63 53 40
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 53 64 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 83 67 57
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.46%)
Alanine (Ala, A)
n = 22 (8.46%)
Serine (Ser, S)
n = 13 (5.0%)
Threonine (Thr, T)
n = 23 (8.85%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 17 (6.54%)
Leucine (Leu, L)
n = 31 (11.92%)
Isoleucine (Ile, I)
n = 16 (6.15%)
Methionine (Met, M)
n = 7 (2.69%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 25 (9.62%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.85%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 8 5 12 9 4 5 1 7 1 4 7 6 0 8 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 2 4 7 9 2 2 14 5 1 2 8 2 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 8 0 2 3 4 1 1 2 5 6 1 0 1 0 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 6 4 0 5 1 1 2 1 2 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 72 52 61
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 67 54 96
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 112 71 60
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 33 (8.71%)
Serine (Ser, S)
n = 22 (5.8%)
Threonine (Thr, T)
n = 20 (5.28%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 28 (7.39%)
Leucine (Leu, L)
n = 65 (17.15%)
Isoleucine (Ile, I)
n = 27 (7.12%)
Methionine (Met, M)
n = 10 (2.64%)
Proline (Pro, P)
n = 20 (5.28%)
Phenylalanine (Phe, F)
n = 31 (8.18%)
Tyrosine (Tyr, Y)
n = 12 (3.17%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 17 (4.49%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 9 4 13 25 14 6 3 5 1 10 6 9 3 11 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 2 6 17 8 2 3 9 6 8 6 10 4 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 5 2 4 11 6 0 0 1 4 8 2 4 5 12 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 3 3 3 8 8 2 0 1 5 2 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
104 104 85 87
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
51 94 74 161
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
41 156 91 92
ND1 (size: 971 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (5.28%)
Alanine (Ala, A)
n = 35 (10.87%)
Serine (Ser, S)
n = 22 (6.83%)
Threonine (Thr, T)
n = 19 (5.9%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 21 (6.52%)
Leucine (Leu, L)
n = 62 (19.25%)
Isoleucine (Ile, I)
n = 22 (6.83%)
Methionine (Met, M)
n = 8 (2.48%)
Proline (Pro, P)
n = 24 (7.45%)
Phenylalanine (Phe, F)
n = 19 (5.9%)
Tyrosine (Tyr, Y)
n = 12 (3.73%)
Tryptophan (Trp, W)
n = 8 (2.48%)
Aspartic acid (Asp, D)
n = 4 (1.24%)
Glutamic acid (Glu, E)
n = 11 (3.42%)
Asparagine (Asn, N)
n = 11 (3.42%)
Glutamine (Gln, Q)
n = 7 (2.17%)
Histidine (His, H)
n = 4 (1.24%)
Lysine (Lys, K)
n = 7 (2.17%)
Arginine (Arg, R)
n = 9 (2.8%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 10 6 18 19 10 7 6 5 2 9 4 2 6 7 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 6 20 9 0 0 6 3 8 7 12 3 2 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 4 2 5 7 4 2 1 3 6 6 5 2 5 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 5 6 1 3 7 0 1 0 5 3 0 0 0 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
88 98 71 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 96 56 132
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
47 120 72 84
ND2 (size: 1051 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (6.3%)
Alanine (Ala, A)
n = 47 (13.47%)
Serine (Ser, S)
n = 39 (11.17%)
Threonine (Thr, T)
n = 35 (10.03%)
Cysteine (Cys, C)
n = 2 (0.57%)
Valine (Val, V)
n = 10 (2.87%)
Leucine (Leu, L)
n = 63 (18.05%)
Isoleucine (Ile, I)
n = 26 (7.45%)
Methionine (Met, M)
n = 14 (4.01%)
Proline (Pro, P)
n = 18 (5.16%)
Phenylalanine (Phe, F)
n = 13 (3.72%)
Tyrosine (Tyr, Y)
n = 6 (1.72%)
Tryptophan (Trp, W)
n = 12 (3.44%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 7 (2.01%)
Glutamine (Gln, Q)
n = 11 (3.15%)
Histidine (His, H)
n = 6 (1.72%)
Lysine (Lys, K)
n = 9 (2.58%)
Arginine (Arg, R)
n = 5 (1.43%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 10 7 17 18 13 7 4 9 2 3 3 3 1 6 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 2 11 19 14 3 3 9 4 6 6 7 2 3 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 7 3 8 16 5 2 1 7 2 4 3 4 0 7 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 3 1 0 1 8 1 1 1 1 2 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
84 95 99 72
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
49 131 44 126
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
45 134 89 82
ND3 (size: 1051 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (6.3%)
Alanine (Ala, A)
n = 47 (13.47%)
Serine (Ser, S)
n = 39 (11.17%)
Threonine (Thr, T)
n = 35 (10.03%)
Cysteine (Cys, C)
n = 2 (0.57%)
Valine (Val, V)
n = 10 (2.87%)
Leucine (Leu, L)
n = 63 (18.05%)
Isoleucine (Ile, I)
n = 26 (7.45%)
Methionine (Met, M)
n = 14 (4.01%)
Proline (Pro, P)
n = 18 (5.16%)
Phenylalanine (Phe, F)
n = 13 (3.72%)
Tyrosine (Tyr, Y)
n = 6 (1.72%)
Tryptophan (Trp, W)
n = 12 (3.44%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 7 (2.01%)
Glutamine (Gln, Q)
n = 11 (3.15%)
Histidine (His, H)
n = 6 (1.72%)
Lysine (Lys, K)
n = 9 (2.58%)
Arginine (Arg, R)
n = 5 (1.43%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 10 7 17 18 13 7 4 9 2 3 3 3 1 6 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 2 11 19 14 3 3 9 4 6 6 7 2 3 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 7 3 8 16 5 2 1 7 2 4 3 4 0 7 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 3 1 0 1 8 1 1 1 1 2 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
84 95 99 72
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
49 131 44 126
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
45 134 89 82
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (5.88%)
Alanine (Ala, A)
n = 37 (8.06%)
Serine (Ser, S)
n = 33 (7.19%)
Threonine (Thr, T)
n = 37 (8.06%)
Cysteine (Cys, C)
n = 6 (1.31%)
Valine (Val, V)
n = 18 (3.92%)
Leucine (Leu, L)
n = 93 (20.26%)
Isoleucine (Ile, I)
n = 36 (7.84%)
Methionine (Met, M)
n = 25 (5.45%)
Proline (Pro, P)
n = 27 (5.88%)
Phenylalanine (Phe, F)
n = 14 (3.05%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 20 (4.36%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 13 (2.83%)
Asparagine (Asn, N)
n = 11 (2.4%)
Glutamine (Gln, Q)
n = 13 (2.83%)
Histidine (His, H)
n = 10 (2.18%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 12 (2.61%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 13 11 24 23 24 8 9 10 3 4 5 6 3 3 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
14 4 2 9 16 8 4 2 14 4 7 3 16 5 3 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 7 5 12 9 5 1 1 5 5 9 6 5 3 8 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 8 5 0 4 8 2 1 3 7 1 0 0 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
99 141 125 95
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
71 128 75 186
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
67 163 126 104
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 6 (6.12%)
Alanine (Ala, A)
n = 14 (14.29%)
Serine (Ser, S)
n = 10 (10.2%)
Threonine (Thr, T)
n = 9 (9.18%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 21 (21.43%)
Isoleucine (Ile, I)
n = 4 (4.08%)
Methionine (Met, M)
n = 5 (5.1%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 6 (6.12%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 1 (1.02%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 4 (4.08%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 2 1 6 7 2 2 3 2 0 0 0 1 0 3 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 2 6 5 2 1 0 2 3 1 2 0 0 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 2 0 1 3 3 0 0 3 1 0 1 1 0 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 2 1 0 1 0 0 0 2 1 1 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
25 29 22 23
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
17 32 13 37
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 39 23 25
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 32 (5.23%)
Alanine (Ala, A)
n = 62 (10.13%)
Serine (Ser, S)
n = 51 (8.33%)
Threonine (Thr, T)
n = 54 (8.82%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 28 (4.58%)
Leucine (Leu, L)
n = 99 (16.18%)
Isoleucine (Ile, I)
n = 44 (7.19%)
Methionine (Met, M)
n = 26 (4.25%)
Proline (Pro, P)
n = 29 (4.74%)
Phenylalanine (Phe, F)
n = 43 (7.03%)
Tyrosine (Tyr, Y)
n = 11 (1.8%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 12 (1.96%)
Glutamic acid (Glu, E)
n = 12 (1.96%)
Asparagine (Asn, N)
n = 27 (4.41%)
Glutamine (Gln, Q)
n = 18 (2.94%)
Histidine (His, H)
n = 15 (2.45%)
Lysine (Lys, K)
n = 20 (3.27%)
Arginine (Arg, R)
n = 9 (1.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
27 17 16 32 26 16 9 11 12 6 10 11 5 2 16 27
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 3 3 11 34 14 3 3 13 8 8 8 14 7 0 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
25 11 6 13 18 6 0 3 11 2 9 5 5 6 21 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 7 5 5 7 18 2 2 3 1 3 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
146 154 185 128
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
75 182 116 240
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
64 251 142 156
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (13.87%)
Alanine (Ala, A)
n = 20 (11.56%)
Serine (Ser, S)
n = 15 (8.67%)
Threonine (Thr, T)
n = 5 (2.89%)
Cysteine (Cys, C)
n = 3 (1.73%)
Valine (Val, V)
n = 28 (16.18%)
Leucine (Leu, L)
n = 31 (17.92%)
Isoleucine (Ile, I)
n = 2 (1.16%)
Methionine (Met, M)
n = 4 (2.31%)
Proline (Pro, P)
n = 4 (2.31%)
Phenylalanine (Phe, F)
n = 10 (5.78%)
Tyrosine (Tyr, Y)
n = 7 (4.05%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 3 (1.73%)
Glutamic acid (Glu, E)
n = 6 (3.47%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 4 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 1 3 4 3 4 11 0 0 6 4 4 14 10 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 1 7 1 4 8 1 4 1 18 0 1 1 2 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 1 8 3 1 0 1 2 3 4 5 6 1 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 6 1 2 0 1 0 0 1 3 0 0 0 1 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 22 16 55
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 41 19 75
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
72 27 27 48
Total protein-coding genes (size: 11430 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 248 (6.52%)
Alanine (Ala, A)
n = 368 (9.67%)
Serine (Ser, S)
n = 269 (7.07%)
Threonine (Thr, T)
n = 276 (7.25%)
Cysteine (Cys, C)
n = 32 (0.84%)
Valine (Val, V)
n = 238 (6.25%)
Leucine (Leu, L)
n = 641 (16.84%)
Isoleucine (Ile, I)
n = 264 (6.94%)
Methionine (Met, M)
n = 150 (3.94%)
Proline (Pro, P)
n = 212 (5.57%)
Phenylalanine (Phe, F)
n = 236 (6.2%)
Tyrosine (Tyr, Y)
n = 107 (2.81%)
Tryptophan (Trp, W)
n = 122 (3.21%)
Aspartic acid (Asp, D)
n = 73 (1.92%)
Glutamic acid (Glu, E)
n = 103 (2.71%)
Asparagine (Asn, N)
n = 111 (2.92%)
Glutamine (Gln, Q)
n = 95 (2.5%)
Histidine (His, H)
n = 102 (2.68%)
Lysine (Lys, K)
n = 76 (2.0%)
Arginine (Arg, R)
n = 78 (2.05%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
152 112 69 185 174 117 65 72 72 23 64 70 61 43 99 137
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
81 12 20 92 164 82 30 22 91 46 89 58 102 36 16 64
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
122 64 26 69 96 39 10 8 47 42 65 39 28 36 75 26
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
76 58 45 17 56 64 12 7 17 36 18 0 0 5 1 83
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1030 1028 932 817
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
535 1070 673 1529
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
526 1424 904 953 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​O​s​m​e​r​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​o​r​d​a​x​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.