Viewing data for Hylobates agilis


Scientific name Hylobates agilis
Common name Agile gibbon
Maximum lifespan 49.00 years (Hylobates agilis@AnAge)

Total mtDNA (size: 16500 bases) GC AT G C A T
Base content (bases) 7538 8962 5255 2283 3947 5015
Base content per 1 kb (bases) 457 543 318 138 239 304
Base content (%) 45.7% 54.3%
Total protein-coding genes (size: 11342 bases) GC AT G C A T
Base content (bases) 5251 6091 3827 1424 2775 3316
Base content per 1 kb (bases) 463 537 337 126 245 292
Base content (%) 46.3% 53.7%
D-loop (size: 1050 bases) GC AT G C A T
Base content (bases) 506 544 358 148 247 297
Base content per 1 kb (bases) 482 518 341 141 235 283
Base content (%) 48.2% 51.8%
Total tRNA-coding genes (size: 1513 bases) GC AT G C A T
Base content (bases) 605 908 368 237 388 520
Base content per 1 kb (bases) 400 600 243 157 256 344
Base content (%) 40.0% 60.0%
Total rRNA-coding genes (size: 2511 bases) GC AT G C A T
Base content (bases) 1123 1388 665 458 528 860
Base content per 1 kb (bases) 447 553 265 182 210 342
Base content (%) 44.7% 55.3%
12S rRNA gene (size: 951 bases) GC AT G C A T
Base content (bases) 446 505 263 183 194 311
Base content per 1 kb (bases) 469 531 277 192 204 327
Base content (%) 46.9% 53.1%
16S rRNA gene (size: 1560 bases) GC AT G C A T
Base content (bases) 677 883 402 275 334 549
Base content per 1 kb (bases) 434 566 258 176 214 352
Base content (%) 43.4% 56.6%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 313 368 237 76 164 204
Base content per 1 kb (bases) 460 540 348 112 241 300
Base content (%) 46.0% 54.0%
ATP8 (size: 207 bases) GC AT G C A T
Base content (bases) 94 113 78 16 40 73
Base content per 1 kb (bases) 454 546 377 77 193 353
Base content (%) 45.4% 54.6%
COX1 (size: 1542 bases) GC AT G C A T
Base content (bases) 732 810 467 265 420 390
Base content per 1 kb (bases) 475 525 303 172 272 253
Base content (%) 47.5% 52.5%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 314 370 212 102 170 200
Base content per 1 kb (bases) 459 541 310 149 249 292
Base content (%) 45.9% 54.1%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 381 403 258 123 202 201
Base content per 1 kb (bases) 486 514 329 157 258 256
Base content (%) 48.6% 51.4%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 542 599 381 161 282 317
Base content per 1 kb (bases) 475 525 334 141 247 278
Base content (%) 47.5% 52.5%
ND1 (size: 956 bases) GC AT G C A T
Base content (bases) 447 509 333 114 234 275
Base content per 1 kb (bases) 468 532 348 119 245 288
Base content (%) 46.8% 53.2%
ND2 (size: 1043 bases) GC AT G C A T
Base content (bases) 466 577 364 102 243 334
Base content per 1 kb (bases) 447 553 349 98 233 320
Base content (%) 44.7% 55.3%
ND3 (size: 346 bases) GC AT G C A T
Base content (bases) 149 197 109 40 88 109
Base content per 1 kb (bases) 431 569 315 116 254 315
Base content (%) 43.1% 56.9%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 619 759 469 150 357 402
Base content per 1 kb (bases) 449 551 340 109 259 292
Base content (%) 44.9% 55.1%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 136 161 101 35 77 84
Base content per 1 kb (bases) 458 542 340 118 259 283
Base content (%) 45.8% 54.2%
ND5 (size: 1812 bases) GC AT G C A T
Base content (bases) 836 976 637 199 423 553
Base content per 1 kb (bases) 461 539 352 110 233 305
Base content (%) 46.1% 53.9%
ND6 (size: 525 bases) GC AT G C A T
Base content (bases) 244 281 197 47 89 192
Base content per 1 kb (bases) 465 535 375 90 170 366
Base content (%) 46.5% 53.5%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.54%)
Alanine (Ala, A)
n = 23 (10.18%)
Serine (Ser, S)
n = 11 (4.87%)
Threonine (Thr, T)
n = 29 (12.83%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (3.54%)
Leucine (Leu, L)
n = 44 (19.47%)
Isoleucine (Ile, I)
n = 25 (11.06%)
Methionine (Met, M)
n = 11 (4.87%)
Proline (Pro, P)
n = 16 (7.08%)
Phenylalanine (Phe, F)
n = 8 (3.54%)
Tyrosine (Tyr, Y)
n = 3 (1.33%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 10 (4.42%)
Glutamine (Gln, Q)
n = 8 (3.54%)
Histidine (His, H)
n = 6 (2.65%)
Lysine (Lys, K)
n = 5 (2.21%)
Arginine (Arg, R)
n = 4 (1.77%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 11 10 6 8 20 6 3 7 1 0 2 5 1 2 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 6 9 8 0 0 6 2 0 2 10 4 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 10 2 0 5 2 1 0 3 0 3 2 1 5 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 3 0 0 1 5 0 0 1 3 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
43 74 83 27
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
18 76 37 96
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 87 84 41
ATP8 (size: 207 bases)
Amino acid sequence: MPQLNTTVWPTVIMSMLLALFLLMQLKTLNTRYHPPASPKLTNTKPHNNPWEHKWTKIYSLHSLPPQS*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 2 (2.94%)
Serine (Ser, S)
n = 5 (7.35%)
Threonine (Thr, T)
n = 8 (11.76%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (2.94%)
Leucine (Leu, L)
n = 11 (16.18%)
Isoleucine (Ile, I)
n = 2 (2.94%)
Methionine (Met, M)
n = 4 (5.88%)
Proline (Pro, P)
n = 9 (13.24%)
Phenylalanine (Phe, F)
n = 1 (1.47%)
Tyrosine (Tyr, Y)
n = 2 (2.94%)
Tryptophan (Trp, W)
n = 3 (4.41%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 1 (1.47%)
Asparagine (Asn, N)
n = 5 (7.35%)
Glutamine (Gln, Q)
n = 3 (4.41%)
Histidine (His, H)
n = 4 (5.88%)
Lysine (Lys, K)
n = 5 (7.35%)
Arginine (Arg, R)
n = 1 (1.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 2 3 2 4 3 1 1 3 0 0 1 1 0 1 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 1 1 0 0 0 0 0 0 6 3 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 3 2 0 2 1 2 0 0 1 1 0 0 0 5 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 1 0 0 0 5 0 0 1 0 0 0 0 0 1 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
5 27 24 13
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
4 24 21 20
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 27 28 7
COX1 (size: 1542 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.97%)
Alanine (Ala, A)
n = 40 (7.8%)
Serine (Ser, S)
n = 33 (6.43%)
Threonine (Thr, T)
n = 34 (6.63%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 38 (7.41%)
Leucine (Leu, L)
n = 61 (11.89%)
Isoleucine (Ile, I)
n = 36 (7.02%)
Methionine (Met, M)
n = 30 (5.85%)
Proline (Pro, P)
n = 30 (5.85%)
Phenylalanine (Phe, F)
n = 42 (8.19%)
Tyrosine (Tyr, Y)
n = 20 (3.9%)
Tryptophan (Trp, W)
n = 16 (3.12%)
Aspartic acid (Asp, D)
n = 16 (3.12%)
Glutamic acid (Glu, E)
n = 9 (1.75%)
Asparagine (Asn, N)
n = 16 (3.12%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 20 (3.9%)
Lysine (Lys, K)
n = 10 (1.95%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 15 26 5 15 25 9 6 6 1 5 16 14 3 13 29
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 4 28 7 1 6 18 16 6 6 14 8 2 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 15 3 6 15 7 1 1 3 9 11 5 1 2 14 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 6 3 6 10 9 1 2 2 4 0 1 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
149 119 131 115
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 133 98 207
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
40 215 161 98
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 14 (6.17%)
Serine (Ser, S)
n = 11 (4.85%)
Threonine (Thr, T)
n = 21 (9.25%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 12 (5.29%)
Leucine (Leu, L)
n = 33 (14.54%)
Isoleucine (Ile, I)
n = 23 (10.13%)
Methionine (Met, M)
n = 9 (3.96%)
Proline (Pro, P)
n = 15 (6.61%)
Phenylalanine (Phe, F)
n = 11 (4.85%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 10 (4.41%)
Glutamic acid (Glu, E)
n = 12 (5.29%)
Asparagine (Asn, N)
n = 7 (3.08%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 6 (2.64%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 14 6 2 10 17 2 2 6 1 3 5 3 1 5 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 1 5 6 3 0 0 5 2 4 3 4 7 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 10 2 1 5 3 0 0 2 4 5 0 0 3 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 9 3 2 8 4 0 1 3 2 0 0 0 0 1 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
59 65 66 38
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 59 56 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 88 78 44
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 16 (6.15%)
Serine (Ser, S)
n = 20 (7.69%)
Threonine (Thr, T)
n = 24 (9.23%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 35 (13.46%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 10 (3.85%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 6 (2.31%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 11 7 2 9 14 8 1 8 1 3 6 7 0 7 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 5 7 3 1 0 9 7 3 4 6 2 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 9 2 2 7 6 1 0 4 5 5 1 1 3 3 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 7 0 1 2 2 1 0 3 2 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
61 76 60 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 68 55 97
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 114 86 40
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.33%)
Alanine (Ala, A)
n = 27 (7.12%)
Serine (Ser, S)
n = 23 (6.07%)
Threonine (Thr, T)
n = 29 (7.65%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 18 (4.75%)
Leucine (Leu, L)
n = 66 (17.41%)
Isoleucine (Ile, I)
n = 31 (8.18%)
Methionine (Met, M)
n = 16 (4.22%)
Proline (Pro, P)
n = 23 (6.07%)
Phenylalanine (Phe, F)
n = 23 (6.07%)
Tyrosine (Tyr, Y)
n = 17 (4.49%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 9 (2.37%)
Glutamic acid (Glu, E)
n = 4 (1.06%)
Asparagine (Asn, N)
n = 18 (4.75%)
Glutamine (Gln, Q)
n = 10 (2.64%)
Histidine (His, H)
n = 11 (2.9%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 7 (1.85%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 25 11 4 19 28 6 8 8 2 1 6 9 2 9 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 2 2 17 7 1 3 12 6 3 2 10 9 2 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 15 1 1 8 9 2 0 3 5 12 3 1 3 15 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 3 1 1 8 9 0 0 4 2 1 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
82 108 106 84
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
49 99 78 154
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
30 174 133 43
ND1 (size: 956 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.79%)
Alanine (Ala, A)
n = 25 (7.89%)
Serine (Ser, S)
n = 19 (5.99%)
Threonine (Thr, T)
n = 38 (11.99%)
Cysteine (Cys, C)
n = 1 (0.32%)
Valine (Val, V)
n = 7 (2.21%)
Leucine (Leu, L)
n = 63 (19.87%)
Isoleucine (Ile, I)
n = 25 (7.89%)
Methionine (Met, M)
n = 16 (5.05%)
Proline (Pro, P)
n = 21 (6.62%)
Phenylalanine (Phe, F)
n = 16 (5.05%)
Tyrosine (Tyr, Y)
n = 14 (4.42%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.95%)
Glutamic acid (Glu, E)
n = 11 (3.47%)
Asparagine (Asn, N)
n = 15 (4.73%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 3 (0.95%)
Lysine (Lys, K)
n = 7 (2.21%)
Arginine (Arg, R)
n = 7 (2.21%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 15 11 4 16 27 8 6 4 2 0 3 3 1 6 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 1 3 15 6 1 0 9 3 0 4 10 6 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
23 11 1 4 6 5 2 0 2 5 9 1 2 2 13 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 11 0 0 3 6 1 0 2 5 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
58 92 103 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 101 59 127
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 140 112 41
ND2 (size: 1043 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 21 (6.07%)
Serine (Ser, S)
n = 26 (7.51%)
Threonine (Thr, T)
n = 43 (12.43%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (4.05%)
Leucine (Leu, L)
n = 62 (17.92%)
Isoleucine (Ile, I)
n = 34 (9.83%)
Methionine (Met, M)
n = 19 (5.49%)
Proline (Pro, P)
n = 23 (6.65%)
Phenylalanine (Phe, F)
n = 14 (4.05%)
Tyrosine (Tyr, Y)
n = 10 (2.89%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 6 (1.73%)
Asparagine (Asn, N)
n = 21 (6.07%)
Glutamine (Gln, Q)
n = 10 (2.89%)
Histidine (His, H)
n = 3 (0.87%)
Lysine (Lys, K)
n = 12 (3.47%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 23 17 8 17 28 3 5 9 1 1 2 10 1 5 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 3 10 8 0 1 7 6 0 1 11 11 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
28 11 3 1 13 9 0 0 3 1 9 2 1 2 19 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 5 1 0 0 11 1 0 4 0 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
55 96 132 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 110 62 143
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 158 139 35
ND3 (size: 1043 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 21 (6.07%)
Serine (Ser, S)
n = 26 (7.51%)
Threonine (Thr, T)
n = 43 (12.43%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (4.05%)
Leucine (Leu, L)
n = 62 (17.92%)
Isoleucine (Ile, I)
n = 34 (9.83%)
Methionine (Met, M)
n = 19 (5.49%)
Proline (Pro, P)
n = 23 (6.65%)
Phenylalanine (Phe, F)
n = 14 (4.05%)
Tyrosine (Tyr, Y)
n = 10 (2.89%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 6 (1.73%)
Asparagine (Asn, N)
n = 21 (6.07%)
Glutamine (Gln, Q)
n = 10 (2.89%)
Histidine (His, H)
n = 3 (0.87%)
Lysine (Lys, K)
n = 12 (3.47%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 23 17 8 17 28 3 5 9 1 1 2 10 1 5 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 3 10 8 0 1 7 6 0 1 11 11 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
28 11 3 1 13 9 0 0 3 1 9 2 1 2 19 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 5 1 0 0 11 1 0 4 0 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
55 96 132 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 110 62 143
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 158 139 35
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 28 (6.11%)
Serine (Ser, S)
n = 38 (8.3%)
Threonine (Thr, T)
n = 45 (9.83%)
Cysteine (Cys, C)
n = 2 (0.44%)
Valine (Val, V)
n = 15 (3.28%)
Leucine (Leu, L)
n = 98 (21.4%)
Isoleucine (Ile, I)
n = 35 (7.64%)
Methionine (Met, M)
n = 33 (7.21%)
Proline (Pro, P)
n = 25 (5.46%)
Phenylalanine (Phe, F)
n = 18 (3.93%)
Tyrosine (Tyr, Y)
n = 13 (2.84%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 8 (1.75%)
Asparagine (Asn, N)
n = 23 (5.02%)
Glutamine (Gln, Q)
n = 9 (1.97%)
Histidine (His, H)
n = 15 (3.28%)
Lysine (Lys, K)
n = 12 (2.62%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 21 29 16 29 38 7 7 7 2 2 4 7 2 7 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 2 0 4 13 11 0 1 10 4 2 2 18 5 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 15 3 5 17 7 0 3 6 2 11 4 1 4 19 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 6 2 2 1 11 1 0 2 7 1 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 149 157 82
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
50 127 83 199
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 193 162 75
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 6 (6.12%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 6 (6.12%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 4 (4.08%)
Leucine (Leu, L)
n = 24 (24.49%)
Isoleucine (Ile, I)
n = 10 (10.2%)
Methionine (Met, M)
n = 9 (9.18%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 3 (3.06%)
Tyrosine (Tyr, Y)
n = 3 (3.06%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 6 (6.12%)
Glutamine (Gln, Q)
n = 1 (1.02%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 9 4 1 5 12 3 3 1 0 0 3 1 0 2 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 3 0 4 1 1 0 3 1 0 0 2 0 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 4 0 0 4 4 0 0 1 0 3 0 0 1 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 2 0 0 1 0 0 0 1 0 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
17 29 32 21
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
9 22 18 50
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 50 34 6
ND5 (size: 1812 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (4.15%)
Alanine (Ala, A)
n = 46 (7.63%)
Serine (Ser, S)
n = 53 (8.79%)
Threonine (Thr, T)
n = 61 (10.12%)
Cysteine (Cys, C)
n = 5 (0.83%)
Valine (Val, V)
n = 14 (2.32%)
Leucine (Leu, L)
n = 104 (17.25%)
Isoleucine (Ile, I)
n = 53 (8.79%)
Methionine (Met, M)
n = 33 (5.47%)
Proline (Pro, P)
n = 31 (5.14%)
Phenylalanine (Phe, F)
n = 32 (5.31%)
Tyrosine (Tyr, Y)
n = 17 (2.82%)
Tryptophan (Trp, W)
n = 12 (1.99%)
Aspartic acid (Asp, D)
n = 8 (1.33%)
Glutamic acid (Glu, E)
n = 13 (2.16%)
Asparagine (Asn, N)
n = 33 (5.47%)
Glutamine (Gln, Q)
n = 19 (3.15%)
Histidine (His, H)
n = 15 (2.49%)
Lysine (Lys, K)
n = 21 (3.48%)
Arginine (Arg, R)
n = 8 (1.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 37 27 12 31 48 7 5 18 1 2 8 3 1 8 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 4 2 26 16 2 2 14 7 2 4 17 10 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
32 19 3 8 17 12 2 1 13 4 13 3 1 3 30 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 12 1 2 6 21 0 0 5 3 0 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
106 171 215 112
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
64 177 127 236
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 289 211 75
ND6 (size: 525 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 29 (16.67%)
Alanine (Ala, A)
n = 10 (5.75%)
Serine (Ser, S)
n = 9 (5.17%)
Threonine (Thr, T)
n = 6 (3.45%)
Cysteine (Cys, C)
n = 2 (1.15%)
Valine (Val, V)
n = 26 (14.94%)
Leucine (Leu, L)
n = 23 (13.22%)
Isoleucine (Ile, I)
n = 12 (6.9%)
Methionine (Met, M)
n = 9 (5.17%)
Proline (Pro, P)
n = 3 (1.72%)
Phenylalanine (Phe, F)
n = 6 (3.45%)
Tyrosine (Tyr, Y)
n = 11 (6.32%)
Tryptophan (Trp, W)
n = 5 (2.87%)
Aspartic acid (Asp, D)
n = 3 (1.72%)
Glutamic acid (Glu, E)
n = 10 (5.75%)
Asparagine (Asn, N)
n = 5 (2.87%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (1.15%)
Arginine (Arg, R)
n = 3 (1.72%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 0 2 1 0 0 2 4 0 0 10 1 5 10 6 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 1 1 4 1 1 4 8 2 3 16 2 1 0 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 2 0 3 0 2 1 1 2 9 2 5 16 4 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 10 2 1 0 2 0 0 1 2 0 1 0 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
78 9 38 50
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 25 31 76
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
76 13 20 66
Total protein-coding genes (size: 11396 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 211 (5.56%)
Alanine (Ala, A)
n = 265 (6.98%)
Serine (Ser, S)
n = 265 (6.98%)
Threonine (Thr, T)
n = 357 (9.41%)
Cysteine (Cys, C)
n = 21 (0.55%)
Valine (Val, V)
n = 177 (4.66%)
Leucine (Leu, L)
n = 651 (17.15%)
Isoleucine (Ile, I)
n = 309 (8.14%)
Methionine (Met, M)
n = 202 (5.32%)
Proline (Pro, P)
n = 218 (5.74%)
Phenylalanine (Phe, F)
n = 204 (5.38%)
Tyrosine (Tyr, Y)
n = 132 (3.48%)
Tryptophan (Trp, W)
n = 103 (2.71%)
Aspartic acid (Asp, D)
n = 60 (1.58%)
Glutamic acid (Glu, E)
n = 91 (2.4%)
Asparagine (Asn, N)
n = 169 (4.45%)
Glutamine (Gln, Q)
n = 92 (2.42%)
Histidine (His, H)
n = 104 (2.74%)
Lysine (Lys, K)
n = 93 (2.45%)
Arginine (Arg, R)
n = 65 (1.71%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
121 188 156 63 166 276 65 54 79 13 29 58 68 22 72 132
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
46 6 15 39 141 74 11 21 95 58 37 30 113 69 6 44
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
159 132 22 31 101 71 12 6 44 45 87 28 27 33 136 23
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
81 70 21 16 44 86 7 3 29 29 4 1 1 3 2 75
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
804 1049 1182 761
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
452 1055 746 1543
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
324 1589 1301 582 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​H​y​l​o​b​a​t​e​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ a​g​i​l​i​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.