Viewing data for Lama pacos


Scientific name Lama pacos
Common name Alpaca
Maximum lifespan 25.80 years (Lama pacos@AnAge)

Total mtDNA (size: 16652 bases) GC AT G C A T
Base content (bases) 6802 9850 4375 2427 4552 5298
Base content per 1 kb (bases) 408 592 263 146 273 318
Base content (%) 40.8% 59.2%
Total protein-coding genes (size: 11347 bases) GC AT G C A T
Base content (bases) 4641 6706 3144 1497 3219 3487
Base content per 1 kb (bases) 409 591 277 132 284 307
Base content (%) 40.9% 59.1%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1497 bases) GC AT G C A T
Base content (bases) 576 921 318 258 410 511
Base content per 1 kb (bases) 385 615 212 172 274 341
Base content (%) 38.5% 61.5%
Total rRNA-coding genes (size: 2529 bases) GC AT G C A T
Base content (bases) 1023 1506 549 474 607 899
Base content per 1 kb (bases) 405 595 217 187 240 355
Base content (%) 40.5% 59.5%
12S rRNA gene (size: 968 bases) GC AT G C A T
Base content (bases) 418 550 231 187 212 338
Base content per 1 kb (bases) 432 568 239 193 219 349
Base content (%) 43.2% 56.8%
16S rRNA gene (size: 1561 bases) GC AT G C A T
Base content (bases) 605 956 318 287 395 561
Base content per 1 kb (bases) 388 612 204 184 253 359
Base content (%) 38.8% 61.2%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 266 415 184 82 205 210
Base content per 1 kb (bases) 391 609 270 120 301 308
Base content (%) 39.1% 60.9%
ATP8 (size: 204 bases) GC AT G C A T
Base content (bases) 70 134 54 16 54 80
Base content per 1 kb (bases) 343 657 265 78 265 392
Base content (%) 34.3% 65.7%
COX1 (size: 1545 bases) GC AT G C A T
Base content (bases) 673 872 400 273 451 421
Base content per 1 kb (bases) 436 564 259 177 292 272
Base content (%) 43.6% 56.4%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 277 407 166 111 193 214
Base content per 1 kb (bases) 405 595 243 162 282 313
Base content (%) 40.5% 59.5%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 356 428 231 125 228 200
Base content per 1 kb (bases) 454 546 295 159 291 255
Base content (%) 45.4% 54.6%
CYTB (size: 1140 bases) GC AT G C A T
Base content (bases) 492 648 331 161 307 341
Base content per 1 kb (bases) 432 568 290 141 269 299
Base content (%) 43.2% 56.8%
ND1 (size: 960 bases) GC AT G C A T
Base content (bases) 400 560 278 122 281 279
Base content per 1 kb (bases) 417 583 290 127 293 291
Base content (%) 41.7% 58.3%
ND2 (size: 1044 bases) GC AT G C A T
Base content (bases) 387 657 280 107 292 365
Base content per 1 kb (bases) 371 629 268 102 280 350
Base content (%) 37.1% 62.9%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 136 213 96 40 110 103
Base content per 1 kb (bases) 390 610 275 115 315 295
Base content (%) 39.0% 61.0%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 570 808 399 171 383 425
Base content per 1 kb (bases) 414 586 290 124 278 308
Base content (%) 41.4% 58.6%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 114 183 75 39 96 87
Base content per 1 kb (bases) 384 616 253 131 323 293
Base content (%) 38.4% 61.6%
ND5 (size: 1821 bases) GC AT G C A T
Base content (bases) 730 1091 518 212 515 576
Base content per 1 kb (bases) 401 599 284 116 283 316
Base content (%) 40.1% 59.9%
ND6 (size: 528 bases) GC AT G C A T
Base content (bases) 189 339 145 44 127 212
Base content per 1 kb (bases) 358 642 275 83 241 402
Base content (%) 35.8% 64.2%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.87%)
Alanine (Ala, A)
n = 16 (7.08%)
Serine (Ser, S)
n = 12 (5.31%)
Threonine (Thr, T)
n = 27 (11.95%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (6.19%)
Leucine (Leu, L)
n = 40 (17.7%)
Isoleucine (Ile, I)
n = 20 (8.85%)
Methionine (Met, M)
n = 16 (7.08%)
Proline (Pro, P)
n = 13 (5.75%)
Phenylalanine (Phe, F)
n = 13 (5.75%)
Tyrosine (Tyr, Y)
n = 3 (1.33%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 10 (4.42%)
Glutamine (Gln, Q)
n = 7 (3.1%)
Histidine (His, H)
n = 7 (3.1%)
Lysine (Lys, K)
n = 5 (2.21%)
Arginine (Arg, R)
n = 5 (2.21%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 6 13 5 5 20 2 8 6 1 6 2 6 0 7 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 5 7 4 0 0 3 6 2 4 4 4 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 9 2 4 1 3 0 2 2 1 2 2 0 7 3 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 3 0 0 1 4 1 0 2 3 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
45 64 82 36
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
23 64 37 103
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 56 91 66
ATP8 (size: 204 bases)
Amino acid sequence: MPQLDTSTWFITILSMLMTLFILFQLKLSKHIYYPTPEPKFSKTHKQNTPWETKWKKIYLPLLLPQQ*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 4 (5.97%)
Threonine (Thr, T)
n = 8 (11.94%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 11 (16.42%)
Isoleucine (Ile, I)
n = 5 (7.46%)
Methionine (Met, M)
n = 3 (4.48%)
Proline (Pro, P)
n = 7 (10.45%)
Phenylalanine (Phe, F)
n = 4 (5.97%)
Tyrosine (Tyr, Y)
n = 3 (4.48%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 1 (1.49%)
Glutamic acid (Glu, E)
n = 2 (2.99%)
Asparagine (Asn, N)
n = 1 (1.49%)
Glutamine (Gln, Q)
n = 5 (7.46%)
Histidine (His, H)
n = 2 (2.99%)
Lysine (Lys, K)
n = 8 (11.94%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 3 2 1 2 3 1 3 5 0 0 0 0 0 2 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 0 0 0 0 0 0 0 1 3 2 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 2 3 1 0 2 0 1 0 3 0 0 1 0 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 1 0 1 7 1 0 0 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
3 21 26 18
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
4 18 23 23
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 15 31 13
COX1 (size: 1545 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 48 (9.34%)
Alanine (Ala, A)
n = 40 (7.78%)
Serine (Ser, S)
n = 30 (5.84%)
Threonine (Thr, T)
n = 38 (7.39%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 38 (7.39%)
Leucine (Leu, L)
n = 61 (11.87%)
Isoleucine (Ile, I)
n = 39 (7.59%)
Methionine (Met, M)
n = 30 (5.84%)
Proline (Pro, P)
n = 28 (5.45%)
Phenylalanine (Phe, F)
n = 41 (7.98%)
Tyrosine (Tyr, Y)
n = 18 (3.5%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 16 (3.11%)
Glutamic acid (Glu, E)
n = 10 (1.95%)
Asparagine (Asn, N)
n = 17 (3.31%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 18 (3.5%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 19 21 2 6 30 8 14 4 3 13 7 16 2 16 25
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 1 0 8 15 16 1 7 13 22 6 5 11 11 1 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 15 3 7 10 9 1 2 1 8 10 3 1 6 11 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 6 4 9 7 8 1 2 3 3 0 0 0 0 1 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
152 107 136 120
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 133 96 209
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
44 160 189 122
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.96%)
Alanine (Ala, A)
n = 8 (3.52%)
Serine (Ser, S)
n = 18 (7.93%)
Threonine (Thr, T)
n = 20 (8.81%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 16 (7.05%)
Leucine (Leu, L)
n = 31 (13.66%)
Isoleucine (Ile, I)
n = 18 (7.93%)
Methionine (Met, M)
n = 14 (6.17%)
Proline (Pro, P)
n = 13 (5.73%)
Phenylalanine (Phe, F)
n = 8 (3.52%)
Tyrosine (Tyr, Y)
n = 11 (4.85%)
Tryptophan (Trp, W)
n = 6 (2.64%)
Aspartic acid (Asp, D)
n = 11 (4.85%)
Glutamic acid (Glu, E)
n = 14 (6.17%)
Asparagine (Asn, N)
n = 5 (2.2%)
Glutamine (Gln, Q)
n = 6 (2.64%)
Histidine (His, H)
n = 6 (2.64%)
Lysine (Lys, K)
n = 5 (2.2%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 10 7 4 2 14 4 7 5 1 4 6 6 0 5 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 1 1 2 3 2 1 2 2 5 0 4 1 8 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 9 1 4 3 5 1 1 4 7 4 2 0 3 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 7 7 7 4 5 0 0 2 3 1 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
58 55 67 48
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
28 54 59 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 57 88 58
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 16 (6.15%)
Serine (Ser, S)
n = 24 (9.23%)
Threonine (Thr, T)
n = 20 (7.69%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 35 (13.46%)
Isoleucine (Ile, I)
n = 13 (5.0%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 22 (8.46%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 6 (2.31%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 3 5 4 5 17 1 8 5 2 4 7 3 2 9 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 4 10 2 0 1 7 10 1 5 5 1 2 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 9 0 2 8 5 1 2 6 4 8 1 0 5 1 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 5 3 2 1 2 0 0 1 4 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
62 69 58 72
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
46 65 55 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 97 87 60
CYTB (size: 1140 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 27 (7.12%)
Serine (Ser, S)
n = 23 (6.07%)
Threonine (Thr, T)
n = 27 (7.12%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 17 (4.49%)
Leucine (Leu, L)
n = 60 (15.83%)
Isoleucine (Ile, I)
n = 40 (10.55%)
Methionine (Met, M)
n = 13 (3.43%)
Proline (Pro, P)
n = 23 (6.07%)
Phenylalanine (Phe, F)
n = 24 (6.33%)
Tyrosine (Tyr, Y)
n = 15 (3.96%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 15 (3.96%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 23 8 5 11 32 3 6 6 0 1 8 8 0 11 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 4 3 12 11 1 4 7 12 3 2 9 11 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 22 0 3 7 8 2 0 3 8 7 0 3 8 7 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 6 0 2 9 8 2 2 0 6 0 1 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
87 100 109 84
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 97 75 154
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 134 157 69
ND1 (size: 960 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (4.08%)
Alanine (Ala, A)
n = 31 (9.72%)
Serine (Ser, S)
n = 19 (5.96%)
Threonine (Thr, T)
n = 25 (7.84%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 17 (5.33%)
Leucine (Leu, L)
n = 52 (16.3%)
Isoleucine (Ile, I)
n = 25 (7.84%)
Methionine (Met, M)
n = 21 (6.58%)
Proline (Pro, P)
n = 22 (6.9%)
Phenylalanine (Phe, F)
n = 20 (6.27%)
Tyrosine (Tyr, Y)
n = 11 (3.45%)
Tryptophan (Trp, W)
n = 9 (2.82%)
Aspartic acid (Asp, D)
n = 4 (1.25%)
Glutamic acid (Glu, E)
n = 11 (3.45%)
Asparagine (Asn, N)
n = 12 (3.76%)
Glutamine (Gln, Q)
n = 7 (2.19%)
Histidine (His, H)
n = 4 (1.25%)
Lysine (Lys, K)
n = 7 (2.19%)
Arginine (Arg, R)
n = 8 (2.51%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 15 17 7 9 28 0 8 6 1 3 6 7 1 15 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 11 12 7 1 4 5 4 0 4 11 6 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 10 1 4 6 7 1 0 1 5 6 1 0 7 5 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 9 2 1 3 7 0 0 1 6 1 0 0 1 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 85 91 68
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 96 57 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 97 131 78
ND2 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.61%)
Alanine (Ala, A)
n = 16 (4.61%)
Serine (Ser, S)
n = 30 (8.65%)
Threonine (Thr, T)
n = 39 (11.24%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 15 (4.32%)
Leucine (Leu, L)
n = 52 (14.99%)
Isoleucine (Ile, I)
n = 31 (8.93%)
Methionine (Met, M)
n = 42 (12.1%)
Proline (Pro, P)
n = 19 (5.48%)
Phenylalanine (Phe, F)
n = 14 (4.03%)
Tyrosine (Tyr, Y)
n = 11 (3.17%)
Tryptophan (Trp, W)
n = 10 (2.88%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 16 (4.61%)
Glutamine (Gln, Q)
n = 11 (3.17%)
Histidine (His, H)
n = 3 (0.86%)
Lysine (Lys, K)
n = 12 (3.46%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 12 37 6 9 23 5 8 10 1 2 6 6 1 7 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 0 2 7 7 0 1 5 7 3 3 9 7 0 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 15 1 6 8 11 1 0 4 4 7 0 1 6 10 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 5 0 0 1 11 1 0 0 4 0 0 0 0 1 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
53 80 144 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 100 60 154
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 100 161 67
ND3 (size: 1044 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.61%)
Alanine (Ala, A)
n = 16 (4.61%)
Serine (Ser, S)
n = 30 (8.65%)
Threonine (Thr, T)
n = 39 (11.24%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 15 (4.32%)
Leucine (Leu, L)
n = 52 (14.99%)
Isoleucine (Ile, I)
n = 31 (8.93%)
Methionine (Met, M)
n = 42 (12.1%)
Proline (Pro, P)
n = 19 (5.48%)
Phenylalanine (Phe, F)
n = 14 (4.03%)
Tyrosine (Tyr, Y)
n = 11 (3.17%)
Tryptophan (Trp, W)
n = 10 (2.88%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 16 (4.61%)
Glutamine (Gln, Q)
n = 11 (3.17%)
Histidine (His, H)
n = 3 (0.86%)
Lysine (Lys, K)
n = 12 (3.46%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 12 37 6 9 23 5 8 10 1 2 6 6 1 7 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 0 2 7 7 0 1 5 7 3 3 9 7 0 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 15 1 6 8 11 1 0 4 4 7 0 1 6 10 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 5 0 0 1 11 1 0 0 4 0 0 0 0 1 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
53 80 144 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 100 60 154
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 100 161 67
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 31 (6.77%)
Serine (Ser, S)
n = 41 (8.95%)
Threonine (Thr, T)
n = 37 (8.08%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 16 (3.49%)
Leucine (Leu, L)
n = 93 (20.31%)
Isoleucine (Ile, I)
n = 37 (8.08%)
Methionine (Met, M)
n = 38 (8.3%)
Proline (Pro, P)
n = 21 (4.59%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 20 (4.37%)
Tryptophan (Trp, W)
n = 13 (2.84%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 22 (4.8%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 9 (1.97%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 22 27 10 14 49 12 7 9 2 4 7 4 1 6 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
11 1 2 6 10 14 1 2 8 5 2 5 13 3 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 19 1 5 12 11 0 5 8 9 11 2 1 13 9 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 7 2 1 3 8 3 1 2 7 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
77 136 158 88
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
56 117 86 200
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
38 146 181 94
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 8 (8.16%)
Serine (Ser, S)
n = 10 (10.2%)
Threonine (Thr, T)
n = 5 (5.1%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 5 (5.1%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 6 (6.12%)
Methionine (Met, M)
n = 14 (14.29%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 4 (4.08%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 4 (4.08%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 2 (2.04%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 3 12 3 3 12 3 1 2 0 0 0 5 0 3 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 1 1 2 4 1 1 3 0 0 1 0 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 1 1 4 3 1 0 1 1 1 3 0 0 2 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 1 1 1 0 0 0 0 0 0 1 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
20 27 31 21
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
10 22 16 51
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 26 40 24
ND5 (size: 1821 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (4.29%)
Alanine (Ala, A)
n = 43 (7.1%)
Serine (Ser, S)
n = 43 (7.1%)
Threonine (Thr, T)
n = 54 (8.91%)
Cysteine (Cys, C)
n = 6 (0.99%)
Valine (Val, V)
n = 24 (3.96%)
Leucine (Leu, L)
n = 96 (15.84%)
Isoleucine (Ile, I)
n = 59 (9.74%)
Methionine (Met, M)
n = 35 (5.78%)
Proline (Pro, P)
n = 28 (4.62%)
Phenylalanine (Phe, F)
n = 43 (7.1%)
Tyrosine (Tyr, Y)
n = 19 (3.14%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 13 (2.15%)
Glutamic acid (Glu, E)
n = 11 (1.82%)
Asparagine (Asn, N)
n = 29 (4.79%)
Glutamine (Gln, Q)
n = 19 (3.14%)
Histidine (His, H)
n = 12 (1.98%)
Lysine (Lys, K)
n = 26 (4.29%)
Arginine (Arg, R)
n = 8 (1.32%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
26 33 31 16 20 39 5 14 16 3 0 8 14 2 23 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 2 4 4 21 16 2 2 9 12 3 7 14 7 0 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 24 3 7 10 16 0 3 7 9 10 0 2 10 19 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 8 3 4 9 20 6 1 4 3 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
117 147 213 130
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
62 158 130 257
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
33 213 233 128
ND6 (size: 528 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.29%)
Alanine (Ala, A)
n = 5 (2.86%)
Serine (Ser, S)
n = 13 (7.43%)
Threonine (Thr, T)
n = 10 (5.71%)
Cysteine (Cys, C)
n = 1 (0.57%)
Valine (Val, V)
n = 22 (12.57%)
Leucine (Leu, L)
n = 16 (9.14%)
Isoleucine (Ile, I)
n = 17 (9.71%)
Methionine (Met, M)
n = 13 (7.43%)
Proline (Pro, P)
n = 4 (2.29%)
Phenylalanine (Phe, F)
n = 14 (8.0%)
Tyrosine (Tyr, Y)
n = 10 (5.71%)
Tryptophan (Trp, W)
n = 4 (2.29%)
Aspartic acid (Asp, D)
n = 5 (2.86%)
Glutamic acid (Glu, E)
n = 7 (4.0%)
Asparagine (Asn, N)
n = 3 (1.71%)
Glutamine (Gln, Q)
n = 1 (0.57%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 4 (2.29%)
Arginine (Arg, R)
n = 1 (0.57%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 1 10 1 0 1 0 8 0 1 5 3 8 6 13 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 0 4 0 0 1 9 0 6 10 0 1 0 3 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 3 3 6 0 0 1 6 0 7 3 3 6 3 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 4 3 4 1 1 3 0 0 0 1 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 8 53 51
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 26 31 82
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
44 10 43 79
Total protein-coding genes (size: 11415 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 217 (5.71%)
Alanine (Ala, A)
n = 252 (6.63%)
Serine (Ser, S)
n = 273 (7.18%)
Threonine (Thr, T)
n = 320 (8.41%)
Cysteine (Cys, C)
n = 24 (0.63%)
Valine (Val, V)
n = 202 (5.31%)
Leucine (Leu, L)
n = 598 (15.72%)
Isoleucine (Ile, I)
n = 318 (8.36%)
Methionine (Met, M)
n = 253 (6.65%)
Proline (Pro, P)
n = 198 (5.21%)
Phenylalanine (Phe, F)
n = 230 (6.05%)
Tyrosine (Tyr, Y)
n = 141 (3.71%)
Tryptophan (Trp, W)
n = 105 (2.76%)
Aspartic acid (Asp, D)
n = 73 (1.92%)
Glutamic acid (Glu, E)
n = 94 (2.47%)
Asparagine (Asn, N)
n = 144 (3.79%)
Glutamine (Gln, Q)
n = 93 (2.45%)
Histidine (His, H)
n = 93 (2.45%)
Lysine (Lys, K)
n = 101 (2.66%)
Arginine (Arg, R)
n = 65 (1.71%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
167 151 195 68 93 279 46 97 78 15 43 60 84 15 122 108
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
58 9 15 52 103 88 9 33 63 91 30 43 84 61 10 70
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
89 142 19 54 69 80 8 24 38 68 73 15 15 73 71 28
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
65 66 28 31 42 83 18 6 16 39 4 1 0 7 2 90
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
838 935 1199 832
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
474 981 748 1601
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
292 1140 1481 891 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​L​a​m​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ p​a​c​o​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.