Viewing data for Platysternon megacephalum


Scientific name Platysternon megacephalum
Common name Big-headed turtle
Maximum lifespan 27.00 years (Platysternon megacephalum@AnAge)

Total mtDNA (size: 19043 bases) GC AT G C A T
Base content (bases) 7351 11692 4884 2467 5218 6474
Base content per 1 kb (bases) 386 614 256 130 274 340
Base content (%) 38.6% 61.4%
Total protein-coding genes (size: 11388 bases) GC AT G C A T
Base content (bases) 4578 6810 3123 1455 3127 3683
Base content per 1 kb (bases) 402 598 274 128 275 323
Base content (%) 40.2% 59.8%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1551 bases) GC AT G C A T
Base content (bases) 582 969 346 236 411 558
Base content per 1 kb (bases) 375 625 223 152 265 360
Base content (%) 37.5% 62.5%
Total rRNA-coding genes (size: 2565 bases) GC AT G C A T
Base content (bases) 1018 1547 585 433 591 956
Base content per 1 kb (bases) 397 603 228 169 230 373
Base content (%) 39.7% 60.3%
12S rRNA gene (size: 957 bases) GC AT G C A T
Base content (bases) 399 558 233 166 215 343
Base content per 1 kb (bases) 417 583 243 173 225 358
Base content (%) 41.7% 58.3%
16S rRNA gene (size: 1608 bases) GC AT G C A T
Base content (bases) 619 989 352 267 376 613
Base content per 1 kb (bases) 385 615 219 166 234 381
Base content (%) 38.5% 61.5%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 255 429 189 66 196 233
Base content per 1 kb (bases) 373 627 276 96 287 341
Base content (%) 37.3% 62.7%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 61 107 49 12 40 67
Base content per 1 kb (bases) 363 637 292 71 238 399
Base content (%) 36.3% 63.7%
COX1 (size: 1548 bases) GC AT G C A T
Base content (bases) 646 902 370 276 469 433
Base content per 1 kb (bases) 417 583 239 178 303 280
Base content (%) 41.7% 58.3%
COX2 (size: 687 bases) GC AT G C A T
Base content (bases) 273 414 173 100 180 234
Base content per 1 kb (bases) 397 603 252 146 262 341
Base content (%) 39.7% 60.3%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 341 443 211 130 219 224
Base content per 1 kb (bases) 435 565 269 166 279 286
Base content (%) 43.5% 56.5%
CYTB (size: 1144 bases) GC AT G C A T
Base content (bases) 471 673 326 145 324 349
Base content per 1 kb (bases) 412 588 285 127 283 305
Base content (%) 41.2% 58.8%
ND1 (size: 972 bases) GC AT G C A T
Base content (bases) 397 575 268 129 283 292
Base content per 1 kb (bases) 408 592 276 133 291 300
Base content (%) 40.8% 59.2%
ND2 (size: 1041 bases) GC AT G C A T
Base content (bases) 415 626 318 97 261 365
Base content per 1 kb (bases) 399 601 305 93 251 351
Base content (%) 39.9% 60.1%
ND3 (size: 350 bases) GC AT G C A T
Base content (bases) 130 220 86 44 109 111
Base content per 1 kb (bases) 371 629 246 126 311 317
Base content (%) 37.1% 62.9%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 552 829 383 169 368 461
Base content per 1 kb (bases) 400 600 277 122 266 334
Base content (%) 40.0% 60.0%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 116 181 87 29 94 87
Base content per 1 kb (bases) 391 609 293 98 316 293
Base content (%) 39.1% 60.9%
ND5 (size: 1815 bases) GC AT G C A T
Base content (bases) 715 1100 500 215 505 595
Base content per 1 kb (bases) 394 606 275 118 278 328
Base content (%) 39.4% 60.6%
ND6 (size: 525 bases) GC AT G C A T
Base content (bases) 208 317 164 44 81 236
Base content per 1 kb (bases) 396 604 312 84 154 450
Base content (%) 39.6% 60.4%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.96%)
Alanine (Ala, A)
n = 14 (6.17%)
Serine (Ser, S)
n = 14 (6.17%)
Threonine (Thr, T)
n = 26 (11.45%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (3.96%)
Leucine (Leu, L)
n = 54 (23.79%)
Isoleucine (Ile, I)
n = 17 (7.49%)
Methionine (Met, M)
n = 16 (7.05%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 9 (3.96%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 12 (5.29%)
Glutamine (Gln, Q)
n = 12 (5.29%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 2 (0.88%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 7 14 9 7 19 1 18 11 1 3 2 4 0 4 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 3 6 5 0 1 2 5 1 1 1 11 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 14 0 3 2 4 1 1 3 1 2 1 0 4 8 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 4 0 0 0 2 0 1 0 4 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
36 70 77 45
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
22 64 37 105
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 55 119 46
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPDPWFLILSLAWLTYILVLQPKILSNKSMNHPTNKNNEIIKTNPWTWPWP*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.82%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 4 (7.27%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.82%)
Leucine (Leu, L)
n = 8 (14.55%)
Isoleucine (Ile, I)
n = 5 (9.09%)
Methionine (Met, M)
n = 2 (3.64%)
Proline (Pro, P)
n = 8 (14.55%)
Phenylalanine (Phe, F)
n = 1 (1.82%)
Tyrosine (Tyr, Y)
n = 1 (1.82%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 1 (1.82%)
Glutamic acid (Glu, E)
n = 1 (1.82%)
Asparagine (Asn, N)
n = 7 (12.73%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 1 (1.82%)
Lysine (Lys, K)
n = 4 (7.27%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 0 1 0 2 3 1 2 2 0 0 1 0 0 0 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 0 1 0 0 0 0 0 1 1 6 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 2 0 2 1 0 0 0 0 0 1 0 0 2 5 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 0 0 1 3 1 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
4 17 22 13
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
5 16 18 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 16 27 10
COX1 (size: 1548 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 48 (9.32%)
Alanine (Ala, A)
n = 39 (7.57%)
Serine (Ser, S)
n = 32 (6.21%)
Threonine (Thr, T)
n = 41 (7.96%)
Cysteine (Cys, C)
n = 3 (0.58%)
Valine (Val, V)
n = 33 (6.41%)
Leucine (Leu, L)
n = 60 (11.65%)
Isoleucine (Ile, I)
n = 41 (7.96%)
Methionine (Met, M)
n = 35 (6.8%)
Proline (Pro, P)
n = 24 (4.66%)
Phenylalanine (Phe, F)
n = 39 (7.57%)
Tyrosine (Tyr, Y)
n = 18 (3.5%)
Tryptophan (Trp, W)
n = 17 (3.3%)
Aspartic acid (Asp, D)
n = 14 (2.72%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 14 (2.72%)
Glutamine (Gln, Q)
n = 10 (1.94%)
Histidine (His, H)
n = 20 (3.88%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 18 30 8 7 18 7 16 5 5 9 1 20 3 19 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 2 8 14 16 1 9 8 14 17 8 4 12 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 17 1 11 4 10 3 1 3 6 12 2 4 9 5 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 9 1 5 9 8 1 4 1 3 0 0 1 0 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
144 102 145 125
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
81 132 95 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
51 136 193 136
COX2 (size: 687 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.51%)
Alanine (Ala, A)
n = 10 (4.39%)
Serine (Ser, S)
n = 14 (6.14%)
Threonine (Thr, T)
n = 18 (7.89%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 14 (6.14%)
Leucine (Leu, L)
n = 28 (12.28%)
Isoleucine (Ile, I)
n = 20 (8.77%)
Methionine (Met, M)
n = 17 (7.46%)
Proline (Pro, P)
n = 13 (5.7%)
Phenylalanine (Phe, F)
n = 9 (3.95%)
Tyrosine (Tyr, Y)
n = 11 (4.82%)
Tryptophan (Trp, W)
n = 5 (2.19%)
Aspartic acid (Asp, D)
n = 9 (3.95%)
Glutamic acid (Glu, E)
n = 14 (6.14%)
Asparagine (Asn, N)
n = 9 (3.95%)
Glutamine (Gln, Q)
n = 8 (3.51%)
Histidine (His, H)
n = 10 (4.39%)
Lysine (Lys, K)
n = 3 (1.32%)
Arginine (Arg, R)
n = 6 (2.63%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 8 13 2 4 12 1 7 7 1 1 4 4 5 4 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 1 3 2 5 0 1 0 5 2 0 3 8 2 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 8 1 3 2 5 2 0 2 1 10 0 2 2 7 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 12 2 2 7 3 0 0 1 5 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
55 56 69 49
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
23 53 65 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 64 100 43
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 17 (6.54%)
Serine (Ser, S)
n = 18 (6.92%)
Threonine (Thr, T)
n = 25 (9.62%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 18 (6.92%)
Leucine (Leu, L)
n = 33 (12.69%)
Isoleucine (Ile, I)
n = 11 (4.23%)
Methionine (Met, M)
n = 13 (5.0%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 10 (3.85%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 4 (1.54%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 4 11 2 2 12 7 8 5 3 4 3 10 1 10 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 3 8 6 0 4 5 7 3 1 1 9 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 11 1 3 3 8 0 0 4 1 9 0 2 2 2 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 7 1 1 3 2 0 0 0 4 1 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
66 65 59 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 68 53 98
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 78 112 49
CYTB (size: 1144 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (6.58%)
Alanine (Ala, A)
n = 22 (5.79%)
Serine (Ser, S)
n = 27 (7.11%)
Threonine (Thr, T)
n = 32 (8.42%)
Cysteine (Cys, C)
n = 1 (0.26%)
Valine (Val, V)
n = 13 (3.42%)
Leucine (Leu, L)
n = 62 (16.32%)
Isoleucine (Ile, I)
n = 36 (9.47%)
Methionine (Met, M)
n = 15 (3.95%)
Proline (Pro, P)
n = 24 (6.32%)
Phenylalanine (Phe, F)
n = 27 (7.11%)
Tyrosine (Tyr, Y)
n = 15 (3.95%)
Tryptophan (Trp, W)
n = 11 (2.89%)
Aspartic acid (Asp, D)
n = 9 (2.37%)
Glutamic acid (Glu, E)
n = 5 (1.32%)
Asparagine (Asn, N)
n = 20 (5.26%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 11 (2.89%)
Lysine (Lys, K)
n = 10 (2.63%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 22 11 7 7 29 2 16 6 2 3 1 8 1 7 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 7 8 6 1 4 7 10 4 7 2 12 3 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 13 1 4 5 15 0 0 3 5 10 2 1 4 16 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 3 2 2 7 10 0 0 1 7 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 96 116 95
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
48 102 78 153
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 128 155 75
ND1 (size: 972 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.95%)
Alanine (Ala, A)
n = 22 (6.81%)
Serine (Ser, S)
n = 32 (9.91%)
Threonine (Thr, T)
n = 17 (5.26%)
Cysteine (Cys, C)
n = 2 (0.62%)
Valine (Val, V)
n = 15 (4.64%)
Leucine (Leu, L)
n = 60 (18.58%)
Isoleucine (Ile, I)
n = 18 (5.57%)
Methionine (Met, M)
n = 23 (7.12%)
Proline (Pro, P)
n = 23 (7.12%)
Phenylalanine (Phe, F)
n = 22 (6.81%)
Tyrosine (Tyr, Y)
n = 12 (3.72%)
Tryptophan (Trp, W)
n = 8 (2.48%)
Aspartic acid (Asp, D)
n = 4 (1.24%)
Glutamic acid (Glu, E)
n = 11 (3.41%)
Asparagine (Asn, N)
n = 14 (4.33%)
Glutamine (Gln, Q)
n = 6 (1.86%)
Histidine (His, H)
n = 3 (0.93%)
Lysine (Lys, K)
n = 8 (2.48%)
Arginine (Arg, R)
n = 7 (2.17%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 11 19 4 9 25 4 17 4 2 2 2 10 1 7 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 1 6 9 6 1 1 5 7 3 5 1 15 2 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 5 1 4 9 17 1 0 1 3 9 1 1 3 11 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 10 1 1 3 6 2 0 1 4 2 0 0 0 1 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 81 81 94
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 93 59 138
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 94 152 51
ND2 (size: 1041 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.76%)
Alanine (Ala, A)
n = 24 (6.94%)
Serine (Ser, S)
n = 26 (7.51%)
Threonine (Thr, T)
n = 48 (13.87%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 3 (0.87%)
Leucine (Leu, L)
n = 66 (19.08%)
Isoleucine (Ile, I)
n = 36 (10.4%)
Methionine (Met, M)
n = 22 (6.36%)
Proline (Pro, P)
n = 20 (5.78%)
Phenylalanine (Phe, F)
n = 11 (3.18%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 12 (3.47%)
Glutamine (Gln, Q)
n = 14 (4.05%)
Histidine (His, H)
n = 8 (2.31%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 17 18 3 8 33 3 18 13 1 1 1 1 0 0 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 5 11 8 0 0 3 8 2 4 6 10 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 21 0 5 7 8 0 1 5 1 6 2 1 2 10 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 4 1 0 1 13 0 1 0 3 0 0 0 0 1 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
46 93 137 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
36 112 61 138
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 113 167 52
ND3 (size: 1041 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.76%)
Alanine (Ala, A)
n = 24 (6.94%)
Serine (Ser, S)
n = 26 (7.51%)
Threonine (Thr, T)
n = 48 (13.87%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 3 (0.87%)
Leucine (Leu, L)
n = 66 (19.08%)
Isoleucine (Ile, I)
n = 36 (10.4%)
Methionine (Met, M)
n = 22 (6.36%)
Proline (Pro, P)
n = 20 (5.78%)
Phenylalanine (Phe, F)
n = 11 (3.18%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.18%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 12 (3.47%)
Glutamine (Gln, Q)
n = 14 (4.05%)
Histidine (His, H)
n = 8 (2.31%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 17 18 3 8 33 3 18 13 1 1 1 1 0 0 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 5 11 8 0 0 3 8 2 4 6 10 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 21 0 5 7 8 0 1 5 1 6 2 1 2 10 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 4 1 0 1 13 0 1 0 3 0 0 0 0 1 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
46 93 137 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
36 112 61 138
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 113 167 52
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (4.58%)
Alanine (Ala, A)
n = 35 (7.63%)
Serine (Ser, S)
n = 31 (6.75%)
Threonine (Thr, T)
n = 54 (11.76%)
Cysteine (Cys, C)
n = 6 (1.31%)
Valine (Val, V)
n = 12 (2.61%)
Leucine (Leu, L)
n = 84 (18.3%)
Isoleucine (Ile, I)
n = 37 (8.06%)
Methionine (Met, M)
n = 31 (6.75%)
Proline (Pro, P)
n = 22 (4.79%)
Phenylalanine (Phe, F)
n = 19 (4.14%)
Tyrosine (Tyr, Y)
n = 10 (2.18%)
Tryptophan (Trp, W)
n = 15 (3.27%)
Aspartic acid (Asp, D)
n = 3 (0.65%)
Glutamic acid (Glu, E)
n = 10 (2.18%)
Asparagine (Asn, N)
n = 15 (3.27%)
Glutamine (Gln, Q)
n = 13 (2.83%)
Histidine (His, H)
n = 19 (4.14%)
Lysine (Lys, K)
n = 14 (3.05%)
Arginine (Arg, R)
n = 9 (1.96%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 18 25 6 14 36 5 21 12 1 1 4 7 0 10 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 2 4 7 16 12 0 1 1 10 9 2 5 14 1 15
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 24 1 3 6 14 0 4 4 6 4 1 2 4 11 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 9 1 1 2 13 1 1 1 6 1 0 0 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 124 159 96
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
59 134 84 183
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 125 217 89
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 5 (5.1%)
Serine (Ser, S)
n = 16 (16.33%)
Threonine (Thr, T)
n = 7 (7.14%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 21 (21.43%)
Isoleucine (Ile, I)
n = 5 (5.1%)
Methionine (Met, M)
n = 9 (9.18%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 2 (2.04%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 4 (4.08%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 3 8 2 3 8 0 8 4 0 1 0 0 1 4 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 3 1 2 2 0 1 3 0 0 1 1 1 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 1 0 1 5 7 0 0 3 1 1 0 0 0 2 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 0 0 1 0 0 0 0 2 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
14 26 26 33
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
13 28 16 42
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
2 33 45 19
ND5 (size: 1815 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (3.97%)
Alanine (Ala, A)
n = 43 (7.12%)
Serine (Ser, S)
n = 50 (8.28%)
Threonine (Thr, T)
n = 60 (9.93%)
Cysteine (Cys, C)
n = 8 (1.32%)
Valine (Val, V)
n = 26 (4.3%)
Leucine (Leu, L)
n = 98 (16.23%)
Isoleucine (Ile, I)
n = 49 (8.11%)
Methionine (Met, M)
n = 38 (6.29%)
Proline (Pro, P)
n = 30 (4.97%)
Phenylalanine (Phe, F)
n = 36 (5.96%)
Tyrosine (Tyr, Y)
n = 17 (2.81%)
Tryptophan (Trp, W)
n = 9 (1.49%)
Aspartic acid (Asp, D)
n = 13 (2.15%)
Glutamic acid (Glu, E)
n = 12 (1.99%)
Asparagine (Asn, N)
n = 23 (3.81%)
Glutamine (Gln, Q)
n = 15 (2.48%)
Histidine (His, H)
n = 13 (2.15%)
Lysine (Lys, K)
n = 30 (4.97%)
Arginine (Arg, R)
n = 10 (1.66%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
28 21 31 8 14 47 5 22 15 0 3 4 13 6 21 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 4 4 15 14 11 3 3 12 8 1 3 8 17 2 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
26 24 3 4 11 27 0 2 6 5 12 2 2 9 14 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 8 4 3 10 28 2 0 5 4 1 0 0 1 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
118 142 208 137
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
59 175 124 247
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
38 183 263 121
ND6 (size: 525 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (14.94%)
Alanine (Ala, A)
n = 9 (5.17%)
Serine (Ser, S)
n = 12 (6.9%)
Threonine (Thr, T)
n = 3 (1.72%)
Cysteine (Cys, C)
n = 4 (2.3%)
Valine (Val, V)
n = 28 (16.09%)
Leucine (Leu, L)
n = 27 (15.52%)
Isoleucine (Ile, I)
n = 11 (6.32%)
Methionine (Met, M)
n = 6 (3.45%)
Proline (Pro, P)
n = 4 (2.3%)
Phenylalanine (Phe, F)
n = 14 (8.05%)
Tyrosine (Tyr, Y)
n = 10 (5.75%)
Tryptophan (Trp, W)
n = 7 (4.02%)
Aspartic acid (Asp, D)
n = 2 (1.15%)
Glutamic acid (Glu, E)
n = 3 (1.72%)
Asparagine (Asn, N)
n = 2 (1.15%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 2 (1.15%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 4 (2.3%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 2 3 2 0 1 2 9 0 0 13 0 4 11 14 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 4 0 5 0 1 3 9 1 6 10 2 0 1 1 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 2 0 5 0 1 2 4 0 9 1 3 13 2 0 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 1 2 0 0 0 3 0 0 1 1 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 15 27 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
46 24 19 86
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
50 5 35 85
Total protein-coding genes (size: 11395 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 217 (5.72%)
Alanine (Ala, A)
n = 248 (6.53%)
Serine (Ser, S)
n = 281 (7.4%)
Threonine (Thr, T)
n = 343 (9.04%)
Cysteine (Cys, C)
n = 34 (0.9%)
Valine (Val, V)
n = 180 (4.74%)
Leucine (Leu, L)
n = 629 (16.57%)
Isoleucine (Ile, I)
n = 296 (7.8%)
Methionine (Met, M)
n = 231 (6.09%)
Proline (Pro, P)
n = 204 (5.37%)
Phenylalanine (Phe, F)
n = 222 (5.85%)
Tyrosine (Tyr, Y)
n = 120 (3.16%)
Tryptophan (Trp, W)
n = 110 (2.9%)
Aspartic acid (Asp, D)
n = 63 (1.66%)
Glutamic acid (Glu, E)
n = 92 (2.42%)
Asparagine (Asn, N)
n = 138 (3.64%)
Glutamine (Gln, Q)
n = 103 (2.71%)
Histidine (His, H)
n = 111 (2.92%)
Lysine (Lys, K)
n = 97 (2.56%)
Arginine (Arg, R)
n = 69 (1.82%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
158 138 187 55 81 251 40 172 87 16 43 23 85 29 103 119
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
44 14 20 65 91 83 9 34 50 80 53 36 33 122 13 67
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
120 147 9 48 57 120 9 13 34 41 79 15 30 43 95 44
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
67 78 14 19 44 90 7 11 10 42 6 1 1 5 2 95
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
800 914 1154 929
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
479 1029 731 1558
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
297 1061 1645 794 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​l​a​t​y​s​t​e​r​n​o​n​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​e​g​a​c​e​p​h​a​l​u​m​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.