Viewing data for Menidia menidia


Scientific name Menidia menidia
Common name Atlantic silverside
Maximum lifespan 2.00 years (Menidia menidia@AnAge)

Total mtDNA (size: 16456 bases) GC AT G C A T
Base content (bases) 8121 8335 4994 3127 4295 4040
Base content per 1 kb (bases) 493 507 303 190 261 246
Base content (%) 49.3% 50.7%
Total protein-coding genes (size: 11406 bases) GC AT G C A T
Base content (bases) 5713 5693 3684 2029 3160 2533
Base content per 1 kb (bases) 501 499 323 178 277 222
Base content (%) 50.1% 49.9%
D-loop (size: 789 bases) GC AT G C A T
Base content (bases) 308 481 178 130 236 245
Base content per 1 kb (bases) 390 610 226 165 299 311
Base content (%) 39.0% 61.0%
Total tRNA-coding genes (size: 1559 bases) GC AT G C A T
Base content (bases) 738 821 401 337 364 457
Base content per 1 kb (bases) 473 527 257 216 233 293
Base content (%) 47.3% 52.7%
Total rRNA-coding genes (size: 2639 bases) GC AT G C A T
Base content (bases) 1332 1307 713 619 523 784
Base content per 1 kb (bases) 505 495 270 235 198 297
Base content (%) 50.5% 49.5%
12S rRNA gene (size: 949 bases) GC AT G C A T
Base content (bases) 486 463 254 232 182 281
Base content per 1 kb (bases) 512 488 268 244 192 296
Base content (%) 51.2% 48.8%
16S rRNA gene (size: 1690 bases) GC AT G C A T
Base content (bases) 846 844 459 387 341 503
Base content per 1 kb (bases) 501 499 272 229 202 298
Base content (%) 50.1% 49.9%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 328 356 233 95 192 164
Base content per 1 kb (bases) 480 520 341 139 281 240
Base content (%) 48.0% 52.0%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 82 86 60 22 41 45
Base content per 1 kb (bases) 488 512 357 131 244 268
Base content (%) 48.8% 51.2%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 768 783 453 315 439 344
Base content per 1 kb (bases) 495 505 292 203 283 222
Base content (%) 49.5% 50.5%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 323 368 198 125 183 185
Base content per 1 kb (bases) 467 533 287 181 265 268
Base content (%) 46.7% 53.3%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 396 389 251 145 216 173
Base content per 1 kb (bases) 504 496 320 185 275 220
Base content (%) 50.4% 49.6%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 550 591 353 197 343 248
Base content per 1 kb (bases) 482 518 309 173 301 217
Base content (%) 48.2% 51.8%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 486 489 316 170 296 193
Base content per 1 kb (bases) 498 502 324 174 304 198
Base content (%) 49.8% 50.2%
ND2 (size: 1045 bases) GC AT G C A T
Base content (bases) 547 498 367 180 289 209
Base content per 1 kb (bases) 523 477 351 172 277 200
Base content (%) 52.3% 47.7%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 174 175 111 63 104 71
Base content per 1 kb (bases) 499 501 318 181 298 203
Base content (%) 49.9% 50.1%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 728 653 479 249 372 281
Base content per 1 kb (bases) 527 473 347 180 269 203
Base content (%) 52.7% 47.3%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 163 134 114 49 74 60
Base content per 1 kb (bases) 549 451 384 165 249 202
Base content (%) 54.9% 45.1%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 900 939 579 321 529 410
Base content per 1 kb (bases) 489 511 315 175 288 223
Base content (%) 48.9% 51.1%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 274 248 173 101 87 161
Base content per 1 kb (bases) 525 475 331 193 167 308
Base content (%) 52.5% 47.5%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.96%)
Alanine (Ala, A)
n = 21 (9.25%)
Serine (Ser, S)
n = 12 (5.29%)
Threonine (Thr, T)
n = 19 (8.37%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 50 (22.03%)
Isoleucine (Ile, I)
n = 20 (8.81%)
Methionine (Met, M)
n = 11 (4.85%)
Proline (Pro, P)
n = 16 (7.05%)
Phenylalanine (Phe, F)
n = 14 (6.17%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 7 (3.08%)
Glutamine (Gln, Q)
n = 9 (3.96%)
Histidine (His, H)
n = 4 (1.76%)
Lysine (Lys, K)
n = 2 (0.88%)
Arginine (Arg, R)
n = 7 (3.08%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 10 5 12 17 12 5 4 8 1 2 5 6 0 8 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 0 4 10 6 1 0 5 3 1 4 7 5 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 7 0 1 3 2 0 1 5 1 2 1 0 4 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 3 1 0 1 1 1 0 3 1 3 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
48 82 65 33
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
27 62 31 108
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 89 68 51
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFAILFFSWLVFAIIVPPKVLAHIFPNEPTPQSTEKPQTESWSWPWQ*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 4 (7.27%)
Serine (Ser, S)
n = 4 (7.27%)
Threonine (Thr, T)
n = 3 (5.45%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 3 (5.45%)
Leucine (Leu, L)
n = 4 (7.27%)
Isoleucine (Ile, I)
n = 4 (7.27%)
Methionine (Met, M)
n = 1 (1.82%)
Proline (Pro, P)
n = 10 (18.18%)
Phenylalanine (Phe, F)
n = 5 (9.09%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 3 (5.45%)
Asparagine (Asn, N)
n = 2 (3.64%)
Glutamine (Gln, Q)
n = 4 (7.27%)
Histidine (His, H)
n = 1 (1.82%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 2 0 0 1 2 1 0 3 1 1 2 0 0 2 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 1 3 0 0 0 0 0 0 2 4 4 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 1 1 2 1 0 0 0 1 0 0 0 0 0 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 1 0 0 1 1 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
10 19 13 14
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 20 13 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 21 19 10
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.91%)
Alanine (Ala, A)
n = 48 (9.3%)
Serine (Ser, S)
n = 30 (5.81%)
Threonine (Thr, T)
n = 35 (6.78%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 42 (8.14%)
Leucine (Leu, L)
n = 63 (12.21%)
Isoleucine (Ile, I)
n = 40 (7.75%)
Methionine (Met, M)
n = 23 (4.46%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 14 (2.71%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 14 (2.71%)
Glutamine (Gln, Q)
n = 9 (1.74%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 21 5 11 21 13 15 3 6 3 9 15 8 10 13 29
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
18 0 1 14 20 12 2 6 11 16 13 9 10 6 3 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 12 4 8 6 9 2 1 4 8 10 2 0 7 7 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 8 3 3 11 8 0 2 1 4 1 0 0 0 1 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
161 124 125 107
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 136 94 210
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
77 193 125 122
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 16 (6.99%)
Serine (Ser, S)
n = 16 (6.99%)
Threonine (Thr, T)
n = 11 (4.8%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 19 (8.3%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 20 (8.73%)
Methionine (Met, M)
n = 11 (4.8%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 10 (4.37%)
Tyrosine (Tyr, Y)
n = 8 (3.49%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 5 (2.18%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 8 3 12 6 7 2 1 5 3 1 5 8 5 3 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 0 2 3 6 5 2 3 3 2 1 4 5 5 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 4 1 3 5 3 1 1 3 2 6 0 0 0 5 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 13 2 6 7 3 1 1 1 3 1 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 65 55 38
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 53 63 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 80 67 56
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.46%)
Alanine (Ala, A)
n = 22 (8.46%)
Serine (Ser, S)
n = 13 (5.0%)
Threonine (Thr, T)
n = 23 (8.85%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 33 (12.69%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.85%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 7 5 6 12 6 5 4 7 2 8 6 2 0 5 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 4 10 7 1 3 13 3 3 6 3 3 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 8 1 3 3 3 1 0 3 5 7 2 0 0 1 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 5 5 1 4 1 1 1 2 1 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 71 52 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 67 55 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
26 113 65 57
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.33%)
Alanine (Ala, A)
n = 33 (8.71%)
Serine (Ser, S)
n = 23 (6.07%)
Threonine (Thr, T)
n = 20 (5.28%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 31 (8.18%)
Leucine (Leu, L)
n = 57 (15.04%)
Isoleucine (Ile, I)
n = 29 (7.65%)
Methionine (Met, M)
n = 10 (2.64%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 30 (7.92%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 5 (1.32%)
Asparagine (Asn, N)
n = 19 (5.01%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 13 2 24 14 9 6 2 7 1 10 7 9 5 6 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 0 3 3 21 8 1 4 11 6 3 7 9 4 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 6 2 6 6 4 5 1 1 5 9 1 2 7 12 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 3 2 3 8 5 4 0 2 4 2 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
104 102 89 85
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
50 95 78 157
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
43 156 81 100
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 34 (10.49%)
Serine (Ser, S)
n = 22 (6.79%)
Threonine (Thr, T)
n = 21 (6.48%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 20 (6.17%)
Leucine (Leu, L)
n = 66 (20.37%)
Isoleucine (Ile, I)
n = 21 (6.48%)
Methionine (Met, M)
n = 10 (3.09%)
Proline (Pro, P)
n = 23 (7.1%)
Phenylalanine (Phe, F)
n = 21 (6.48%)
Tyrosine (Tyr, Y)
n = 10 (3.09%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 10 (3.09%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 6 2 17 22 9 8 3 4 2 10 2 5 3 12 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 0 0 6 20 5 3 1 9 3 5 1 17 5 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 2 1 6 6 6 0 2 2 5 5 1 7 6 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 8 3 2 2 4 3 1 3 3 1 0 0 1 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
87 97 73 68
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 96 53 138
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
45 123 67 90
ND2 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (5.48%)
Alanine (Ala, A)
n = 43 (12.39%)
Serine (Ser, S)
n = 23 (6.63%)
Threonine (Thr, T)
n = 38 (10.95%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 12 (3.46%)
Leucine (Leu, L)
n = 78 (22.48%)
Isoleucine (Ile, I)
n = 17 (4.9%)
Methionine (Met, M)
n = 12 (3.46%)
Proline (Pro, P)
n = 22 (6.34%)
Phenylalanine (Phe, F)
n = 14 (4.03%)
Tyrosine (Tyr, Y)
n = 6 (1.73%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 9 (2.59%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 9 (2.59%)
Lysine (Lys, K)
n = 8 (2.31%)
Arginine (Arg, R)
n = 5 (1.44%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 6 7 27 25 6 7 6 5 9 7 4 1 0 6 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 1 4 21 12 6 5 8 3 3 4 9 5 4 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
21 6 3 3 10 3 4 2 1 6 0 5 7 2 7 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 2 3 1 1 5 3 2 0 2 1 0 0 0 0 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 115 87 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 123 53 133
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
60 129 69 90
ND3 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (5.48%)
Alanine (Ala, A)
n = 43 (12.39%)
Serine (Ser, S)
n = 23 (6.63%)
Threonine (Thr, T)
n = 38 (10.95%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 12 (3.46%)
Leucine (Leu, L)
n = 78 (22.48%)
Isoleucine (Ile, I)
n = 17 (4.9%)
Methionine (Met, M)
n = 12 (3.46%)
Proline (Pro, P)
n = 22 (6.34%)
Phenylalanine (Phe, F)
n = 14 (4.03%)
Tyrosine (Tyr, Y)
n = 6 (1.73%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 9 (2.59%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 9 (2.59%)
Lysine (Lys, K)
n = 8 (2.31%)
Arginine (Arg, R)
n = 5 (1.44%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 6 7 27 25 6 7 6 5 9 7 4 1 0 6 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 1 4 21 12 6 5 8 3 3 4 9 5 4 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
21 6 3 3 10 3 4 2 1 6 0 5 7 2 7 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 2 3 1 1 5 3 2 0 2 1 0 0 0 0 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 115 87 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 123 53 133
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
60 129 69 90
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (5.66%)
Alanine (Ala, A)
n = 42 (9.15%)
Serine (Ser, S)
n = 33 (7.19%)
Threonine (Thr, T)
n = 41 (8.93%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 17 (3.7%)
Leucine (Leu, L)
n = 100 (21.79%)
Isoleucine (Ile, I)
n = 31 (6.75%)
Methionine (Met, M)
n = 23 (5.01%)
Proline (Pro, P)
n = 30 (6.54%)
Phenylalanine (Phe, F)
n = 15 (3.27%)
Tyrosine (Tyr, Y)
n = 16 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.7%)
Aspartic acid (Asp, D)
n = 3 (0.65%)
Glutamic acid (Glu, E)
n = 12 (2.61%)
Asparagine (Asn, N)
n = 9 (1.96%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 10 (2.18%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 12 11 28 36 16 12 7 2 8 8 3 3 3 4 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
12 1 3 7 26 6 3 3 10 6 7 3 17 6 4 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
25 3 6 4 11 6 3 4 5 5 11 10 1 2 7 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 7 5 2 1 5 5 1 4 3 3 0 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
100 153 123 84
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
67 137 70 186
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
82 189 88 101
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 14 (14.29%)
Serine (Ser, S)
n = 12 (12.24%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 4 (4.08%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 8 (8.16%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 2 (2.04%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 1 (1.02%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 5 (5.1%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 1 3 7 9 3 0 2 1 0 1 0 0 3 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 3 1 8 4 1 1 3 1 0 0 0 2 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 1 0 2 3 4 0 0 3 0 0 1 1 0 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 2 0 0 2 0 0 0 0 1 1 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
24 34 18 23
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 33 14 38
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 47 28 13
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 31 (5.07%)
Alanine (Ala, A)
n = 56 (9.15%)
Serine (Ser, S)
n = 41 (6.7%)
Threonine (Thr, T)
n = 58 (9.48%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 31 (5.07%)
Leucine (Leu, L)
n = 96 (15.69%)
Isoleucine (Ile, I)
n = 47 (7.68%)
Methionine (Met, M)
n = 28 (4.58%)
Proline (Pro, P)
n = 31 (5.07%)
Phenylalanine (Phe, F)
n = 43 (7.03%)
Tyrosine (Tyr, Y)
n = 14 (2.29%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 13 (2.12%)
Glutamic acid (Glu, E)
n = 12 (1.96%)
Asparagine (Asn, N)
n = 29 (4.74%)
Glutamine (Gln, Q)
n = 17 (2.78%)
Histidine (His, H)
n = 15 (2.45%)
Lysine (Lys, K)
n = 20 (3.27%)
Arginine (Arg, R)
n = 10 (1.63%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
32 15 10 22 26 19 19 6 5 12 13 11 4 3 18 25
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
18 2 4 14 30 6 6 8 15 6 2 7 15 5 4 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
34 8 4 9 12 5 5 3 7 5 9 7 4 7 22 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 4 8 8 5 7 13 1 3 4 2 0 0 1 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
143 159 192 119
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
71 176 121 245
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
107 244 97 165
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.45%)
Alanine (Ala, A)
n = 19 (10.98%)
Serine (Ser, S)
n = 14 (8.09%)
Threonine (Thr, T)
n = 5 (2.89%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 23 (13.29%)
Leucine (Leu, L)
n = 34 (19.65%)
Isoleucine (Ile, I)
n = 5 (2.89%)
Methionine (Met, M)
n = 5 (2.89%)
Proline (Pro, P)
n = 3 (1.73%)
Phenylalanine (Phe, F)
n = 8 (4.62%)
Tyrosine (Tyr, Y)
n = 8 (4.62%)
Tryptophan (Trp, W)
n = 4 (2.31%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 5 (2.89%)
Asparagine (Asn, N)
n = 3 (1.73%)
Glutamine (Gln, Q)
n = 1 (0.58%)
Histidine (His, H)
n = 2 (1.16%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 5 (2.89%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 1 2 5 2 7 10 7 0 1 6 3 6 8 5 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 0 4 3 5 7 3 2 6 14 2 0 0 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 3 0 5 5 1 2 1 4 4 1 3 1 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 4 2 0 0 0 0 1 1 3 0 0 0 1 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 35 21 44
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 38 22 75
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
60 28 44 42
Total protein-coding genes (size: 11428 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 242 (6.36%)
Alanine (Ala, A)
n = 361 (9.49%)
Serine (Ser, S)
n = 251 (6.59%)
Threonine (Thr, T)
n = 289 (7.59%)
Cysteine (Cys, C)
n = 25 (0.66%)
Valine (Val, V)
n = 235 (6.17%)
Leucine (Leu, L)
n = 657 (17.26%)
Isoleucine (Ile, I)
n = 257 (6.75%)
Methionine (Met, M)
n = 150 (3.94%)
Proline (Pro, P)
n = 220 (5.78%)
Phenylalanine (Phe, F)
n = 241 (6.33%)
Tyrosine (Tyr, Y)
n = 112 (2.94%)
Tryptophan (Trp, W)
n = 117 (3.07%)
Aspartic acid (Asp, D)
n = 74 (1.94%)
Glutamic acid (Glu, E)
n = 101 (2.65%)
Asparagine (Asn, N)
n = 110 (2.89%)
Glutamine (Gln, Q)
n = 101 (2.65%)
Histidine (His, H)
n = 107 (2.81%)
Lysine (Lys, K)
n = 73 (1.92%)
Arginine (Arg, R)
n = 77 (2.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
153 104 54 177 193 122 96 44 57 44 77 68 52 38 89 152
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
96 6 19 67 184 77 33 37 93 60 52 49 100 53 18 58
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
144 61 26 49 74 52 23 17 36 46 66 32 25 37 73 24
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
83 62 39 29 45 40 33 9 20 28 20 0 0 5 2 85
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1013 1093 932 769
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
514 1068 685 1540
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
577 1454 852 924 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​M​e​n​i​d​i​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​e​n​i​d​i​a​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.