Viewing data for Etheostoma radiosum


Scientific name Etheostoma radiosum
Common name Orangebelly darter
Maximum lifespan 4.00 years (Etheostoma radiosum@AnAge)

Total mtDNA (size: 16600 bases) GC AT G C A T
Base content (bases) 7655 8945 4598 3057 4661 4284
Base content per 1 kb (bases) 461 539 277 184 281 258
Base content (%) 46.1% 53.9%
Total protein-coding genes (size: 11411 bases) GC AT G C A T
Base content (bases) 5310 6101 3328 1982 3394 2707
Base content per 1 kb (bases) 465 535 292 174 297 237
Base content (%) 46.5% 53.5%
D-loop (size: 938 bases) GC AT G C A T
Base content (bases) 360 578 195 165 303 275
Base content per 1 kb (bases) 384 616 208 176 323 293
Base content (%) 38.4% 61.6%
Total tRNA-coding genes (size: 1549 bases) GC AT G C A T
Base content (bases) 711 838 387 324 372 466
Base content per 1 kb (bases) 459 541 250 209 240 301
Base content (%) 45.9% 54.1%
Total rRNA-coding genes (size: 2639 bases) GC AT G C A T
Base content (bases) 1241 1398 666 575 574 824
Base content per 1 kb (bases) 470 530 252 218 218 312
Base content (%) 47.0% 53.0%
12S rRNA gene (size: 947 bases) GC AT G C A T
Base content (bases) 460 487 249 211 196 291
Base content per 1 kb (bases) 486 514 263 223 207 307
Base content (%) 48.6% 51.4%
16S rRNA gene (size: 1692 bases) GC AT G C A T
Base content (bases) 781 911 417 364 378 533
Base content per 1 kb (bases) 462 538 246 215 223 315
Base content (%) 46.2% 53.8%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 307 377 209 98 213 164
Base content per 1 kb (bases) 449 551 306 143 311 240
Base content (%) 44.9% 55.1%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 68 100 49 19 48 52
Base content per 1 kb (bases) 405 595 292 113 286 310
Base content (%) 40.5% 59.5%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 722 829 423 299 471 358
Base content per 1 kb (bases) 466 534 273 193 304 231
Base content (%) 46.6% 53.4%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 304 387 189 115 196 191
Base content per 1 kb (bases) 440 560 274 166 284 276
Base content (%) 44.0% 56.0%
COX3 (size: 786 bases) GC AT G C A T
Base content (bases) 389 397 237 152 219 178
Base content per 1 kb (bases) 495 505 302 193 279 226
Base content (%) 49.5% 50.5%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 541 600 335 206 371 229
Base content per 1 kb (bases) 474 526 294 181 325 201
Base content (%) 47.4% 52.6%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 462 513 282 180 308 205
Base content per 1 kb (bases) 474 526 289 185 316 210
Base content (%) 47.4% 52.6%
ND2 (size: 1047 bases) GC AT G C A T
Base content (bases) 500 547 330 170 311 236
Base content per 1 kb (bases) 478 522 315 162 297 225
Base content (%) 47.8% 52.2%
ND3 (size: 351 bases) GC AT G C A T
Base content (bases) 166 185 103 63 118 67
Base content per 1 kb (bases) 473 527 293 179 336 191
Base content (%) 47.3% 52.7%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 636 745 394 242 417 328
Base content per 1 kb (bases) 461 539 285 175 302 238
Base content (%) 46.1% 53.9%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 147 150 99 48 91 59
Base content per 1 kb (bases) 495 505 333 162 306 199
Base content (%) 49.5% 50.5%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 835 1004 525 310 542 462
Base content per 1 kb (bases) 454 546 285 169 295 251
Base content (%) 45.4% 54.6%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 239 283 157 82 94 189
Base content per 1 kb (bases) 458 542 301 157 180 362
Base content (%) 45.8% 54.2%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 22 (9.69%)
Serine (Ser, S)
n = 9 (3.96%)
Threonine (Thr, T)
n = 20 (8.81%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 55 (24.23%)
Isoleucine (Ile, I)
n = 16 (7.05%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 17 (7.49%)
Phenylalanine (Phe, F)
n = 11 (4.85%)
Tyrosine (Tyr, Y)
n = 4 (1.76%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 9 (3.96%)
Histidine (His, H)
n = 4 (1.76%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 4 8 16 12 13 2 9 6 3 6 2 4 1 10 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 6 9 5 2 0 4 5 2 9 6 2 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 9 1 2 2 1 0 1 3 2 2 1 3 1 8 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 2 0 1 0 1 1 2 2 1 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
51 79 60 38
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 64 33 105
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 66 71 70
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPTPWFAILVFTWLIFLAIVPTKILAHTYPNEPTSQSTEKPKTEPWTWPWH*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 3 (5.45%)
Serine (Ser, S)
n = 2 (3.64%)
Threonine (Thr, T)
n = 8 (14.55%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (3.64%)
Leucine (Leu, L)
n = 5 (9.09%)
Isoleucine (Ile, I)
n = 4 (7.27%)
Methionine (Met, M)
n = 1 (1.82%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 1 (1.82%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 3 (5.45%)
Asparagine (Asn, N)
n = 2 (3.64%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 0 0 0 1 1 1 2 2 0 2 0 0 0 3 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 2 1 0 0 0 0 0 0 5 3 1 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 3 1 1 0 0 0 0 1 0 1 0 0 1 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 1 2 0 0 3 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
8 16 19 13
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 21 14 15
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 12 19 20
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.91%)
Alanine (Ala, A)
n = 49 (9.5%)
Serine (Ser, S)
n = 28 (5.43%)
Threonine (Thr, T)
n = 38 (7.36%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 40 (7.75%)
Leucine (Leu, L)
n = 62 (12.02%)
Isoleucine (Ile, I)
n = 41 (7.95%)
Methionine (Met, M)
n = 23 (4.46%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 14 (2.71%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
27 14 8 21 8 18 4 10 5 3 10 7 16 7 25 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
15 0 1 12 22 10 5 3 16 14 13 10 13 3 2 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 12 2 6 11 4 2 0 5 6 12 3 1 7 8 9
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 7 4 3 11 8 0 3 0 4 1 0 0 1 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
160 114 130 113
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 138 94 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
62 171 134 150
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 18 (7.86%)
Serine (Ser, S)
n = 17 (7.42%)
Threonine (Thr, T)
n = 8 (3.49%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 19 (8.3%)
Leucine (Leu, L)
n = 29 (12.66%)
Isoleucine (Ile, I)
n = 20 (8.73%)
Methionine (Met, M)
n = 10 (4.37%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 5 (2.18%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 7 7 8 4 7 3 7 7 1 6 4 6 3 6 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 2 2 8 7 1 2 3 4 0 5 6 3 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 5 0 1 10 3 0 0 3 3 6 3 0 2 3 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 14 1 6 7 3 1 3 1 2 0 0 0 0 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 60 50 46
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 54 64 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 75 77 62
COX3 (size: 786 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.05%)
Alanine (Ala, A)
n = 24 (9.2%)
Serine (Ser, S)
n = 13 (4.98%)
Threonine (Thr, T)
n = 23 (8.81%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 14 (5.36%)
Leucine (Leu, L)
n = 30 (11.49%)
Isoleucine (Ile, I)
n = 16 (6.13%)
Methionine (Met, M)
n = 9 (3.45%)
Proline (Pro, P)
n = 13 (4.98%)
Phenylalanine (Phe, F)
n = 24 (9.2%)
Tyrosine (Tyr, Y)
n = 12 (4.6%)
Tryptophan (Trp, W)
n = 12 (4.6%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.83%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 9 (3.45%)
Histidine (His, H)
n = 16 (6.13%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 10 6 8 9 6 2 5 7 2 5 4 3 2 15 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 2 2 12 9 1 4 7 3 7 4 8 0 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 10 3 1 4 3 2 0 3 3 9 4 0 0 1 8
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 5 5 1 4 1 1 1 1 2 1 0 0 0 1 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 68 54 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 70 56 93
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
35 99 68 60
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (7.12%)
Alanine (Ala, A)
n = 35 (9.23%)
Serine (Ser, S)
n = 21 (5.54%)
Threonine (Thr, T)
n = 21 (5.54%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 26 (6.86%)
Leucine (Leu, L)
n = 62 (16.36%)
Isoleucine (Ile, I)
n = 29 (7.65%)
Methionine (Met, M)
n = 7 (1.85%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 31 (8.18%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 10 (2.64%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 19 (5.01%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 8 2 24 16 8 3 5 4 2 8 9 4 5 15 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 2 8 15 7 5 7 8 6 6 8 9 3 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 3 3 3 9 5 3 0 1 6 8 6 6 6 13 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 5 1 4 6 6 3 3 2 2 1 0 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
104 98 86 92
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
52 97 76 155
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
50 140 67 123
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 34 (10.49%)
Serine (Ser, S)
n = 20 (6.17%)
Threonine (Thr, T)
n = 19 (5.86%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 19 (5.86%)
Leucine (Leu, L)
n = 63 (19.44%)
Isoleucine (Ile, I)
n = 27 (8.33%)
Methionine (Met, M)
n = 10 (3.09%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 18 (5.56%)
Tyrosine (Tyr, Y)
n = 11 (3.4%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 12 (3.7%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 8 2 16 12 15 5 10 4 3 6 5 2 6 13 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 0 0 10 14 8 2 3 7 4 4 10 10 2 2 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 4 1 4 4 7 2 0 3 5 6 4 5 8 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 5 6 1 3 2 5 3 1 1 3 0 0 0 1 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
86 91 78 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 94 57 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
57 97 70 101
ND2 (size: 1047 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (5.46%)
Alanine (Ala, A)
n = 45 (12.93%)
Serine (Ser, S)
n = 19 (5.46%)
Threonine (Thr, T)
n = 40 (11.49%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (2.87%)
Leucine (Leu, L)
n = 77 (22.13%)
Isoleucine (Ile, I)
n = 18 (5.17%)
Methionine (Met, M)
n = 13 (3.74%)
Proline (Pro, P)
n = 22 (6.32%)
Phenylalanine (Phe, F)
n = 14 (4.02%)
Tyrosine (Tyr, Y)
n = 7 (2.01%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 9 (2.59%)
Glutamine (Gln, Q)
n = 16 (4.6%)
Histidine (His, H)
n = 8 (2.3%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 4 4 36 12 14 5 6 10 6 4 3 3 0 11 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 0 0 9 19 12 5 7 5 3 4 8 8 4 2 13
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 10 4 2 7 5 1 0 4 5 2 3 4 5 4 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 2 2 2 1 4 5 1 2 0 1 0 0 1 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 117 93 58
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 122 57 132
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
51 91 86 121
ND3 (size: 1047 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (5.46%)
Alanine (Ala, A)
n = 45 (12.93%)
Serine (Ser, S)
n = 19 (5.46%)
Threonine (Thr, T)
n = 40 (11.49%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (2.87%)
Leucine (Leu, L)
n = 77 (22.13%)
Isoleucine (Ile, I)
n = 18 (5.17%)
Methionine (Met, M)
n = 13 (3.74%)
Proline (Pro, P)
n = 22 (6.32%)
Phenylalanine (Phe, F)
n = 14 (4.02%)
Tyrosine (Tyr, Y)
n = 7 (2.01%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 9 (2.59%)
Glutamine (Gln, Q)
n = 16 (4.6%)
Histidine (His, H)
n = 8 (2.3%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 4 4 36 12 14 5 6 10 6 4 3 3 0 11 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 0 0 9 19 12 5 7 5 3 4 8 8 4 2 13
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 10 4 2 7 5 1 0 4 5 2 3 4 5 4 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 2 2 2 1 4 5 1 2 0 1 0 0 1 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 117 93 58
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 122 57 132
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
51 91 86 121
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (6.1%)
Alanine (Ala, A)
n = 41 (8.93%)
Serine (Ser, S)
n = 31 (6.75%)
Threonine (Thr, T)
n = 37 (8.06%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 22 (4.79%)
Leucine (Leu, L)
n = 95 (20.7%)
Isoleucine (Ile, I)
n = 30 (6.54%)
Methionine (Met, M)
n = 24 (5.23%)
Proline (Pro, P)
n = 27 (5.88%)
Phenylalanine (Phe, F)
n = 18 (3.92%)
Tyrosine (Tyr, Y)
n = 13 (2.83%)
Tryptophan (Trp, W)
n = 19 (4.14%)
Aspartic acid (Asp, D)
n = 6 (1.31%)
Glutamic acid (Glu, E)
n = 11 (2.4%)
Asparagine (Asn, N)
n = 11 (2.4%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 11 (2.4%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 7 16 32 15 25 7 10 8 3 6 7 9 0 14 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 1 3 12 17 7 5 5 9 4 10 6 10 9 2 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 10 3 9 6 6 1 2 7 7 6 7 6 6 5 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 7 4 1 5 7 3 1 2 4 4 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
108 139 121 92
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
71 127 73 189
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
63 128 134 135
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 14 (14.29%)
Serine (Ser, S)
n = 12 (12.24%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 24 (24.49%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 4 (4.08%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 7 (7.14%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 2 (2.04%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 0 (0%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 2 6 8 7 0 2 3 0 1 0 0 1 5 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 3 4 5 4 1 1 1 2 1 0 1 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 1 0 3 1 3 1 2 2 0 0 0 1 0 0 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 0 1 1 0 0 0 3 0 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
25 33 18 23
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
16 32 12 39
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 34 29 29
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 35 (5.72%)
Alanine (Ala, A)
n = 56 (9.15%)
Serine (Ser, S)
n = 42 (6.86%)
Threonine (Thr, T)
n = 54 (8.82%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 34 (5.56%)
Leucine (Leu, L)
n = 97 (15.85%)
Isoleucine (Ile, I)
n = 48 (7.84%)
Methionine (Met, M)
n = 25 (4.08%)
Proline (Pro, P)
n = 34 (5.56%)
Phenylalanine (Phe, F)
n = 42 (6.86%)
Tyrosine (Tyr, Y)
n = 10 (1.63%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 13 (2.12%)
Glutamic acid (Glu, E)
n = 12 (1.96%)
Asparagine (Asn, N)
n = 27 (4.41%)
Glutamine (Gln, Q)
n = 15 (2.45%)
Histidine (His, H)
n = 16 (2.61%)
Lysine (Lys, K)
n = 20 (3.27%)
Arginine (Arg, R)
n = 12 (1.96%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
35 13 14 20 23 30 9 12 10 5 13 8 7 6 24 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
11 2 4 8 31 11 6 7 9 13 6 16 12 3 3 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 20 5 10 8 7 3 10 4 4 6 7 3 9 18 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 8 4 6 7 12 8 0 4 5 3 0 0 1 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
150 159 188 116
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
81 172 114 246
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
79 194 160 180
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 23 (13.29%)
Alanine (Ala, A)
n = 16 (9.25%)
Serine (Ser, S)
n = 13 (7.51%)
Threonine (Thr, T)
n = 4 (2.31%)
Cysteine (Cys, C)
n = 1 (0.58%)
Valine (Val, V)
n = 25 (14.45%)
Leucine (Leu, L)
n = 29 (16.76%)
Isoleucine (Ile, I)
n = 5 (2.89%)
Methionine (Met, M)
n = 7 (4.05%)
Proline (Pro, P)
n = 7 (4.05%)
Phenylalanine (Phe, F)
n = 10 (5.78%)
Tyrosine (Tyr, Y)
n = 10 (5.78%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 3 (1.73%)
Glutamic acid (Glu, E)
n = 6 (3.47%)
Asparagine (Asn, N)
n = 3 (1.73%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 5 (2.89%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 2 2 5 0 8 0 10 0 0 9 1 5 10 9 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 1 8 0 6 2 6 3 4 10 3 1 0 3 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 1 4 3 2 0 2 2 7 3 1 6 2 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 5 0 3 1 0 1 0 2 2 0 0 0 1 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 25 24 52
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 36 24 76
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
46 21 46 61
Total protein-coding genes (size: 11433 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 248 (6.51%)
Alanine (Ala, A)
n = 366 (9.61%)
Serine (Ser, S)
n = 232 (6.09%)
Threonine (Thr, T)
n = 288 (7.56%)
Cysteine (Cys, C)
n = 23 (0.6%)
Valine (Val, V)
n = 231 (6.06%)
Leucine (Leu, L)
n = 657 (17.25%)
Isoleucine (Ile, I)
n = 265 (6.96%)
Methionine (Met, M)
n = 145 (3.81%)
Proline (Pro, P)
n = 227 (5.96%)
Phenylalanine (Phe, F)
n = 237 (6.22%)
Tyrosine (Tyr, Y)
n = 111 (2.91%)
Tryptophan (Trp, W)
n = 120 (3.15%)
Aspartic acid (Asp, D)
n = 78 (2.05%)
Glutamic acid (Glu, E)
n = 101 (2.65%)
Asparagine (Asn, N)
n = 114 (2.99%)
Glutamine (Gln, Q)
n = 97 (2.55%)
Histidine (His, H)
n = 107 (2.81%)
Lysine (Lys, K)
n = 75 (1.97%)
Arginine (Arg, R)
n = 78 (2.05%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
187 78 72 200 125 157 46 92 68 29 77 52 59 43 157 80
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
73 4 19 83 161 86 36 46 75 63 64 88 90 33 16 59
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
114 91 24 46 68 48 15 17 38 49 62 40 37 48 66 43
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
64 62 39 27 51 47 28 18 19 24 17 0 0 6 4 80
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1024 1037 942 807
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
524 1058 693 1535
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
511 1162 988 1149 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​E​t​h​e​o​s​t​o​m​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ r​a​d​i​o​s​u​m​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.