Viewing data for Passer montanus


Scientific name Passer montanus
Common name Eurasian tree sparrow
Maximum lifespan 13.10 years (Passer montanus@AnAge)

Total mtDNA (size: 16887 bases) GC AT G C A T
Base content (bases) 8011 8876 5390 2621 3805 5071
Base content per 1 kb (bases) 474 526 319 155 225 300
Base content (%) 47.4% 52.6%
Total protein-coding genes (size: 11382 bases) GC AT G C A T
Base content (bases) 5532 5850 3900 1632 2546 3304
Base content per 1 kb (bases) 486 514 343 143 224 290
Base content (%) 48.6% 51.4%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1541 bases) GC AT G C A T
Base content (bases) 662 879 386 276 385 494
Base content per 1 kb (bases) 430 570 250 179 250 321
Base content (%) 43.0% 57.0%
Total rRNA-coding genes (size: 2581 bases) GC AT G C A T
Base content (bases) 1195 1386 669 526 533 853
Base content per 1 kb (bases) 463 537 259 204 207 330
Base content (%) 46.3% 53.7%
12S rRNA gene (size: 981 bases) GC AT G C A T
Base content (bases) 478 503 272 206 200 303
Base content per 1 kb (bases) 487 513 277 210 204 309
Base content (%) 48.7% 51.3%
16S rRNA gene (size: 1600 bases) GC AT G C A T
Base content (bases) 717 883 397 320 333 550
Base content per 1 kb (bases) 448 552 248 200 208 344
Base content (%) 44.8% 55.2%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 322 362 241 81 162 200
Base content per 1 kb (bases) 471 529 352 118 237 292
Base content (%) 47.1% 52.9%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 77 91 67 10 41 50
Base content per 1 kb (bases) 458 542 399 60 244 298
Base content (%) 45.8% 54.2%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 753 798 479 274 357 441
Base content per 1 kb (bases) 485 515 309 177 230 284
Base content (%) 48.5% 51.5%
COX2 (size: 685 bases) GC AT G C A T
Base content (bases) 327 358 219 108 157 201
Base content per 1 kb (bases) 477 523 320 158 229 293
Base content (%) 47.7% 52.3%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 388 396 255 133 188 208
Base content per 1 kb (bases) 495 505 325 170 240 265
Base content (%) 49.5% 50.5%
CYTB (size: 1146 bases) GC AT G C A T
Base content (bases) 569 577 402 167 264 313
Base content per 1 kb (bases) 497 503 351 146 230 273
Base content (%) 49.7% 50.3%
ND1 (size: 978 bases) GC AT G C A T
Base content (bases) 492 486 325 167 240 246
Base content per 1 kb (bases) 503 497 332 171 245 252
Base content (%) 50.3% 49.7%
ND2 (size: 1040 bases) GC AT G C A T
Base content (bases) 499 541 370 129 231 310
Base content per 1 kb (bases) 480 520 356 124 222 298
Base content (%) 48.0% 52.0%
ND3 (size: 351 bases) GC AT G C A T
Base content (bases) 163 188 119 44 87 101
Base content per 1 kb (bases) 464 536 339 125 248 288
Base content (%) 46.4% 53.6%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 676 702 496 180 299 403
Base content per 1 kb (bases) 491 509 360 131 217 292
Base content (%) 49.1% 50.9%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 150 147 110 40 64 83
Base content per 1 kb (bases) 505 495 370 135 215 279
Base content (%) 50.5% 49.5%
ND5 (size: 1818 bases) GC AT G C A T
Base content (bases) 848 970 611 237 409 561
Base content per 1 kb (bases) 466 534 336 130 225 309
Base content (%) 46.6% 53.4%
ND6 (size: 519 bases) GC AT G C A T
Base content (bases) 273 246 209 64 51 195
Base content per 1 kb (bases) 526 474 403 123 98 376
Base content (%) 52.6% 47.4%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 16 (7.05%)
Serine (Ser, S)
n = 16 (7.05%)
Threonine (Thr, T)
n = 23 (10.13%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (3.96%)
Leucine (Leu, L)
n = 60 (26.43%)
Isoleucine (Ile, I)
n = 17 (7.49%)
Methionine (Met, M)
n = 9 (3.96%)
Proline (Pro, P)
n = 15 (6.61%)
Phenylalanine (Phe, F)
n = 11 (4.85%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 3 (1.32%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 14 8 4 15 25 7 9 6 2 1 4 3 1 1 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 11 5 0 2 2 2 2 0 2 12 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 12 2 2 6 3 1 0 4 0 3 1 0 0 9 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 3 1 0 3 3 1 1 0 4 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
40 82 66 40
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
21 66 35 106
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 93 99 16
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPNPWFFIMLSSWLTFSLIIQPKLLSFVSMNPPSRKSTTIPNTTPWTWPWT*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 7 (12.73%)
Threonine (Thr, T)
n = 7 (12.73%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.82%)
Leucine (Leu, L)
n = 6 (10.91%)
Isoleucine (Ile, I)
n = 4 (7.27%)
Methionine (Met, M)
n = 3 (5.45%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 4 (7.27%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 1 (1.82%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 4 1 0 3 2 1 0 2 0 0 0 1 0 2 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 0 0 0 0 0 0 0 2 3 4 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 0 0 1 3 3 0 0 0 0 0 0 0 0 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 0 0 0 2 0 1 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1 18 20 17
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 23 9 18
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 26 21 6
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 45 (8.72%)
Serine (Ser, S)
n = 29 (5.62%)
Threonine (Thr, T)
n = 39 (7.56%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 40 (7.75%)
Leucine (Leu, L)
n = 63 (12.21%)
Isoleucine (Ile, I)
n = 38 (7.36%)
Methionine (Met, M)
n = 22 (4.26%)
Proline (Pro, P)
n = 30 (5.81%)
Phenylalanine (Phe, F)
n = 43 (8.33%)
Tyrosine (Tyr, Y)
n = 17 (3.29%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 9 (1.74%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 31 13 2 8 40 10 3 9 0 5 9 19 7 7 36
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 0 1 7 19 18 1 2 12 26 7 2 11 16 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 21 0 1 9 13 2 0 4 1 16 1 0 0 15 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
17 10 0 5 10 9 0 0 2 6 0 0 1 0 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
157 126 128 106
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 139 94 206
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
39 214 219 45
COX2 (size: 685 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 16 (7.05%)
Serine (Ser, S)
n = 22 (9.69%)
Threonine (Thr, T)
n = 14 (6.17%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 19 (8.37%)
Leucine (Leu, L)
n = 31 (13.66%)
Isoleucine (Ile, I)
n = 12 (5.29%)
Methionine (Met, M)
n = 13 (5.73%)
Proline (Pro, P)
n = 12 (5.29%)
Phenylalanine (Phe, F)
n = 9 (3.96%)
Tyrosine (Tyr, Y)
n = 7 (3.08%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 12 (5.29%)
Glutamic acid (Glu, E)
n = 12 (5.29%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 8 (3.52%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 9 9 5 9 9 5 3 7 0 2 6 9 2 3 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 3 1 12 3 0 1 1 5 1 3 3 6 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 5 0 4 4 9 0 0 5 1 6 0 0 1 7 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 10 2 0 12 4 0 0 3 3 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 61 56 44
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
27 59 58 84
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 99 87 28
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 25 (9.62%)
Serine (Ser, S)
n = 16 (6.15%)
Threonine (Thr, T)
n = 19 (7.31%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 33 (12.69%)
Isoleucine (Ile, I)
n = 15 (5.77%)
Methionine (Met, M)
n = 7 (2.69%)
Proline (Pro, P)
n = 14 (5.38%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 15 (5.77%)
Lysine (Lys, K)
n = 4 (1.54%)
Arginine (Arg, R)
n = 6 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 10 5 1 9 15 3 5 6 2 2 4 6 4 3 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 5 15 5 0 0 4 13 2 1 6 6 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 8 1 5 2 5 0 0 4 3 8 0 0 1 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 7 1 0 4 3 1 0 1 3 2 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 71 54 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 70 55 94
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 114 99 29
CYTB (size: 1146 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.3%)
Alanine (Ala, A)
n = 26 (6.82%)
Serine (Ser, S)
n = 23 (6.04%)
Threonine (Thr, T)
n = 24 (6.3%)
Cysteine (Cys, C)
n = 4 (1.05%)
Valine (Val, V)
n = 24 (6.3%)
Leucine (Leu, L)
n = 68 (17.85%)
Isoleucine (Ile, I)
n = 31 (8.14%)
Methionine (Met, M)
n = 7 (1.84%)
Proline (Pro, P)
n = 24 (6.3%)
Phenylalanine (Phe, F)
n = 28 (7.35%)
Tyrosine (Tyr, Y)
n = 12 (3.15%)
Tryptophan (Trp, W)
n = 11 (2.89%)
Aspartic acid (Asp, D)
n = 8 (2.1%)
Glutamic acid (Glu, E)
n = 7 (1.84%)
Asparagine (Asn, N)
n = 21 (5.51%)
Glutamine (Gln, Q)
n = 9 (2.36%)
Histidine (His, H)
n = 12 (3.15%)
Lysine (Lys, K)
n = 10 (2.62%)
Arginine (Arg, R)
n = 8 (2.1%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 23 4 3 17 33 10 5 9 0 0 13 10 1 0 28
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 3 3 17 6 0 1 7 13 3 2 10 9 3 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 12 1 0 9 11 2 0 1 2 10 2 0 1 20 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 3 4 0 8 9 1 1 2 5 0 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
89 116 94 83
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
48 96 80 158
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
30 190 139 23
ND1 (size: 978 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.62%)
Alanine (Ala, A)
n = 30 (9.23%)
Serine (Ser, S)
n = 25 (7.69%)
Threonine (Thr, T)
n = 17 (5.23%)
Cysteine (Cys, C)
n = 4 (1.23%)
Valine (Val, V)
n = 15 (4.62%)
Leucine (Leu, L)
n = 66 (20.31%)
Isoleucine (Ile, I)
n = 24 (7.38%)
Methionine (Met, M)
n = 12 (3.69%)
Proline (Pro, P)
n = 25 (7.69%)
Phenylalanine (Phe, F)
n = 19 (5.85%)
Tyrosine (Tyr, Y)
n = 14 (4.31%)
Tryptophan (Trp, W)
n = 8 (2.46%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 12 (3.69%)
Asparagine (Asn, N)
n = 13 (4.0%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 2 (0.62%)
Lysine (Lys, K)
n = 6 (1.85%)
Arginine (Arg, R)
n = 8 (2.46%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 19 7 4 12 30 13 7 3 3 0 5 5 5 2 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 3 4 13 9 4 0 5 4 6 3 10 10 2 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 8 1 1 12 6 1 1 4 4 10 1 0 2 11 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 6 6 0 4 5 1 1 2 3 2 1 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 100 78 72
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 92 57 136
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
50 133 111 32
ND2 (size: 1040 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.77%)
Alanine (Ala, A)
n = 29 (8.41%)
Serine (Ser, S)
n = 29 (8.41%)
Threonine (Thr, T)
n = 42 (12.17%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 11 (3.19%)
Leucine (Leu, L)
n = 68 (19.71%)
Isoleucine (Ile, I)
n = 30 (8.7%)
Methionine (Met, M)
n = 18 (5.22%)
Proline (Pro, P)
n = 22 (6.38%)
Phenylalanine (Phe, F)
n = 13 (3.77%)
Tyrosine (Tyr, Y)
n = 7 (2.03%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 11 (3.19%)
Glutamine (Gln, Q)
n = 9 (2.61%)
Histidine (His, H)
n = 9 (2.61%)
Lysine (Lys, K)
n = 14 (4.06%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 26 12 3 17 33 9 5 7 2 2 3 5 1 0 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 2 6 9 12 2 1 5 4 3 1 5 14 2 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
24 10 2 4 10 6 4 1 4 0 7 3 1 0 11 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 3 1 0 2 13 1 0 1 2 0 0 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
59 105 120 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 117 56 140
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
37 148 133 28
ND3 (size: 1040 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.77%)
Alanine (Ala, A)
n = 29 (8.41%)
Serine (Ser, S)
n = 29 (8.41%)
Threonine (Thr, T)
n = 42 (12.17%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 11 (3.19%)
Leucine (Leu, L)
n = 68 (19.71%)
Isoleucine (Ile, I)
n = 30 (8.7%)
Methionine (Met, M)
n = 18 (5.22%)
Proline (Pro, P)
n = 22 (6.38%)
Phenylalanine (Phe, F)
n = 13 (3.77%)
Tyrosine (Tyr, Y)
n = 7 (2.03%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 11 (3.19%)
Glutamine (Gln, Q)
n = 9 (2.61%)
Histidine (His, H)
n = 9 (2.61%)
Lysine (Lys, K)
n = 14 (4.06%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 26 12 3 17 33 9 5 7 2 2 3 5 1 0 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 2 6 9 12 2 1 5 4 3 1 5 14 2 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
24 10 2 4 10 6 4 1 4 0 7 3 1 0 11 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 3 1 0 2 13 1 0 1 2 0 0 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
59 105 120 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 117 56 140
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
37 148 133 28
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 45 (9.83%)
Serine (Ser, S)
n = 37 (8.08%)
Threonine (Thr, T)
n = 41 (8.95%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 11 (2.4%)
Leucine (Leu, L)
n = 96 (20.96%)
Isoleucine (Ile, I)
n = 40 (8.73%)
Methionine (Met, M)
n = 24 (5.24%)
Proline (Pro, P)
n = 28 (6.11%)
Phenylalanine (Phe, F)
n = 12 (2.62%)
Tyrosine (Tyr, Y)
n = 14 (3.06%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 2 (0.44%)
Glutamic acid (Glu, E)
n = 10 (2.18%)
Asparagine (Asn, N)
n = 18 (3.93%)
Glutamine (Gln, Q)
n = 14 (3.06%)
Histidine (His, H)
n = 13 (2.84%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 29 18 3 25 55 10 2 11 3 0 4 6 1 1 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 4 9 27 8 1 1 8 5 3 2 12 13 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 19 4 3 11 13 1 1 8 2 12 3 1 1 17 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 6 4 0 2 7 3 0 2 8 1 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
85 159 142 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 142 81 183
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
42 195 180 42
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 10 (10.2%)
Serine (Ser, S)
n = 12 (12.24%)
Threonine (Thr, T)
n = 9 (9.18%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 4 (4.08%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 3 (3.06%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 5 (5.1%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 3 3 0 1 19 2 0 3 0 0 0 1 0 1 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 2 0 8 1 1 0 2 1 1 0 2 1 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 4 0 0 5 3 0 1 3 0 3 0 0 0 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 2 0 1 0 0 0 0 0 1 1 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
18 35 25 21
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 30 17 38
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 45 41 5
ND5 (size: 1818 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 33 (5.45%)
Alanine (Ala, A)
n = 49 (8.1%)
Serine (Ser, S)
n = 52 (8.6%)
Threonine (Thr, T)
n = 66 (10.91%)
Cysteine (Cys, C)
n = 7 (1.16%)
Valine (Val, V)
n = 21 (3.47%)
Leucine (Leu, L)
n = 97 (16.03%)
Isoleucine (Ile, I)
n = 54 (8.93%)
Methionine (Met, M)
n = 31 (5.12%)
Proline (Pro, P)
n = 30 (4.96%)
Phenylalanine (Phe, F)
n = 35 (5.79%)
Tyrosine (Tyr, Y)
n = 13 (2.15%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 9 (1.49%)
Glutamic acid (Glu, E)
n = 12 (1.98%)
Asparagine (Asn, N)
n = 23 (3.8%)
Glutamine (Gln, Q)
n = 17 (2.81%)
Histidine (His, H)
n = 14 (2.31%)
Lysine (Lys, K)
n = 22 (3.64%)
Arginine (Arg, R)
n = 8 (1.32%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 48 25 7 10 56 10 12 15 2 4 7 7 3 2 33
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 2 5 7 28 14 0 0 11 17 5 3 14 11 2 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
34 26 1 4 21 12 2 1 12 1 12 4 2 6 17 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 12 0 1 8 20 2 1 2 5 0 1 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
124 152 210 120
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
74 184 110 238
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
39 275 241 51
ND6 (size: 519 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (17.44%)
Alanine (Ala, A)
n = 14 (8.14%)
Serine (Ser, S)
n = 14 (8.14%)
Threonine (Thr, T)
n = 2 (1.16%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 34 (19.77%)
Leucine (Leu, L)
n = 31 (18.02%)
Isoleucine (Ile, I)
n = 1 (0.58%)
Methionine (Met, M)
n = 5 (2.91%)
Proline (Pro, P)
n = 4 (2.33%)
Phenylalanine (Phe, F)
n = 9 (5.23%)
Tyrosine (Tyr, Y)
n = 7 (4.07%)
Tryptophan (Trp, W)
n = 4 (2.33%)
Aspartic acid (Asp, D)
n = 4 (2.33%)
Glutamic acid (Glu, E)
n = 4 (2.33%)
Asparagine (Asn, N)
n = 3 (1.74%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 4 (2.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 0 1 3 0 0 6 7 0 0 16 2 0 16 7 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 2 0 5 2 4 3 6 5 2 17 2 0 0 2 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 1 4 1 0 5 2 2 4 3 3 15 3 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 3 4 0 0 0 0 0 0 4 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
86 17 15 55
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 30 19 80
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
79 17 17 60
Total protein-coding genes (size: 11399 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 223 (5.87%)
Alanine (Ala, A)
n = 313 (8.24%)
Serine (Ser, S)
n = 289 (7.61%)
Threonine (Thr, T)
n = 310 (8.16%)
Cysteine (Cys, C)
n = 32 (0.84%)
Valine (Val, V)
n = 204 (5.37%)
Leucine (Leu, L)
n = 671 (17.67%)
Isoleucine (Ile, I)
n = 278 (7.32%)
Methionine (Met, M)
n = 162 (4.27%)
Proline (Pro, P)
n = 224 (5.9%)
Phenylalanine (Phe, F)
n = 220 (5.79%)
Tyrosine (Tyr, Y)
n = 110 (2.9%)
Tryptophan (Trp, W)
n = 106 (2.79%)
Aspartic acid (Asp, D)
n = 67 (1.76%)
Glutamic acid (Glu, E)
n = 91 (2.4%)
Asparagine (Asn, N)
n = 135 (3.56%)
Glutamine (Gln, Q)
n = 96 (2.53%)
Histidine (His, H)
n = 100 (2.63%)
Lysine (Lys, K)
n = 86 (2.26%)
Arginine (Arg, R)
n = 72 (1.9%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
56 222 111 36 131 338 89 58 82 14 32 58 73 41 30 190
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
51 7 25 49 165 87 12 14 64 94 51 21 81 107 15 35
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
135 127 13 29 97 86 18 7 52 18 92 18 19 16 119 8
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
92 68 23 11 56 76 10 5 16 41 10 2 1 5 1 88
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
898 1086 1033 781
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
495 1077 691 1535
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
386 1595 1443 374 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​a​s​s​e​r​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​o​n​t​a​n​u​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.