Viewing data for Lacerta viridis


Scientific name Lacerta viridis
Common name European green lizard
Maximum lifespan 10.00 years (Lacerta viridis@AnAge)

Total mtDNA (size: 17156 bases) GC AT G C A T
Base content (bases) 6901 10255 4626 2275 4881 5374
Base content per 1 kb (bases) 402 598 270 133 285 313
Base content (%) 40.2% 59.8%
Total protein-coding genes (size: 11345 bases) GC AT G C A T
Base content (bases) 4604 6741 3233 1371 3262 3479
Base content per 1 kb (bases) 406 594 285 121 288 307
Base content (%) 40.6% 59.4%
D-loop (size: 1752 bases) GC AT G C A T
Base content (bases) 594 1158 398 196 628 530
Base content per 1 kb (bases) 339 661 227 112 358 303
Base content (%) 33.9% 66.1%
Total tRNA-coding genes (size: 1506 bases) GC AT G C A T
Base content (bases) 621 885 364 257 387 498
Base content per 1 kb (bases) 412 588 242 171 257 331
Base content (%) 41.2% 58.8%
Total rRNA-coding genes (size: 2475 bases) GC AT G C A T
Base content (bases) 1044 1431 601 443 589 842
Base content per 1 kb (bases) 422 578 243 179 238 340
Base content (%) 42.2% 57.8%
12S rRNA gene (size: 943 bases) GC AT G C A T
Base content (bases) 398 545 221 177 225 320
Base content per 1 kb (bases) 422 578 234 188 239 339
Base content (%) 42.2% 57.8%
16S rRNA gene (size: 1532 bases) GC AT G C A T
Base content (bases) 646 886 380 266 364 522
Base content per 1 kb (bases) 422 578 248 174 238 341
Base content (%) 42.2% 57.8%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 270 411 199 71 201 210
Base content per 1 kb (bases) 396 604 292 104 295 308
Base content (%) 39.6% 60.4%
ATP8 (size: 154 bases) GC AT G C A T
Base content (bases) 54 100 45 9 45 55
Base content per 1 kb (bases) 351 649 292 58 292 357
Base content (%) 35.1% 64.9%
COX1 (size: 1545 bases) GC AT G C A T
Base content (bases) 651 894 393 258 488 406
Base content per 1 kb (bases) 421 579 254 167 316 263
Base content (%) 42.1% 57.9%
COX2 (size: 685 bases) GC AT G C A T
Base content (bases) 273 412 175 98 190 222
Base content per 1 kb (bases) 399 601 255 143 277 324
Base content (%) 39.9% 60.1%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 330 454 208 122 222 232
Base content per 1 kb (bases) 421 579 265 156 283 296
Base content (%) 42.1% 57.9%
CYTB (size: 1143 bases) GC AT G C A T
Base content (bases) 468 675 332 136 361 314
Base content per 1 kb (bases) 409 591 290 119 316 275
Base content (%) 40.9% 59.1%
ND1 (size: 969 bases) GC AT G C A T
Base content (bases) 383 586 267 116 287 299
Base content per 1 kb (bases) 395 605 276 120 296 309
Base content (%) 39.5% 60.5%
ND2 (size: 1035 bases) GC AT G C A T
Base content (bases) 403 632 309 94 290 342
Base content per 1 kb (bases) 389 611 299 91 280 330
Base content (%) 38.9% 61.1%
ND3 (size: 346 bases) GC AT G C A T
Base content (bases) 144 202 102 42 106 96
Base content per 1 kb (bases) 416 584 295 121 306 277
Base content (%) 41.6% 58.4%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 563 818 432 131 410 408
Base content per 1 kb (bases) 408 592 313 95 297 295
Base content (%) 40.8% 59.2%
ND4L (size: 292 bases) GC AT G C A T
Base content (bases) 111 181 81 30 90 91
Base content per 1 kb (bases) 380 620 277 103 308 312
Base content (%) 38.0% 62.0%
ND5 (size: 1824 bases) GC AT G C A T
Base content (bases) 752 1072 531 221 500 572
Base content per 1 kb (bases) 412 588 291 121 274 314
Base content (%) 41.2% 58.8%
ND6 (size: 516 bases) GC AT G C A T
Base content (bases) 204 312 161 43 75 237
Base content per 1 kb (bases) 395 605 312 83 145 459
Base content (%) 39.5% 60.5%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.54%)
Alanine (Ala, A)
n = 14 (6.19%)
Serine (Ser, S)
n = 13 (5.75%)
Threonine (Thr, T)
n = 31 (13.72%)
Cysteine (Cys, C)
n = 1 (0.44%)
Valine (Val, V)
n = 8 (3.54%)
Leucine (Leu, L)
n = 49 (21.68%)
Isoleucine (Ile, I)
n = 21 (9.29%)
Methionine (Met, M)
n = 14 (6.19%)
Proline (Pro, P)
n = 13 (5.75%)
Phenylalanine (Phe, F)
n = 12 (5.31%)
Tyrosine (Tyr, Y)
n = 5 (2.21%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.77%)
Asparagine (Asn, N)
n = 9 (3.98%)
Glutamine (Gln, Q)
n = 10 (4.42%)
Histidine (His, H)
n = 3 (1.33%)
Lysine (Lys, K)
n = 2 (0.88%)
Arginine (Arg, R)
n = 5 (2.21%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 9 13 9 7 16 6 11 8 2 3 2 3 0 8 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 3 6 3 2 1 2 4 1 3 4 6 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 13 0 2 1 5 0 0 5 3 2 1 0 6 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 3 1 0 1 2 0 0 2 3 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
35 69 82 41
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
22 66 35 104
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 64 93 56
ATP8 (size: 154 bases)
Amino acid sequence: MPQLNPTPWFMTLILIWMFLIMLLTKILNNKPPLNTSQYWKQSDKPHWTWP
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 2 (4.0%)
Threonine (Thr, T)
n = 5 (10.0%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 8 (16.0%)
Isoleucine (Ile, I)
n = 4 (8.0%)
Methionine (Met, M)
n = 4 (8.0%)
Proline (Pro, P)
n = 7 (14.0%)
Phenylalanine (Phe, F)
n = 2 (4.0%)
Tyrosine (Tyr, Y)
n = 1 (2.0%)
Tryptophan (Trp, W)
n = 5 (10.0%)
Aspartic acid (Asp, D)
n = 1 (2.0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 4 (8.0%)
Glutamine (Gln, Q)
n = 3 (6.0%)
Histidine (His, H)
n = 1 (2.0%)
Lysine (Lys, K)
n = 4 (8.0%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 2 3 5 0 2 0 1 2 1 0 0 0 0 1 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 0 0 0 0 0 0 0 1 4 2 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 1 0 1 0 1 0 0 0 1 0 0 0 2 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 0 0 1 0 3 1 0 0 0 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1 18 21 11
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
5 14 14 18
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 13 20 15
COX1 (size: 1545 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 48 (9.34%)
Alanine (Ala, A)
n = 41 (7.98%)
Serine (Ser, S)
n = 31 (6.03%)
Threonine (Thr, T)
n = 42 (8.17%)
Cysteine (Cys, C)
n = 2 (0.39%)
Valine (Val, V)
n = 35 (6.81%)
Leucine (Leu, L)
n = 66 (12.84%)
Isoleucine (Ile, I)
n = 37 (7.2%)
Methionine (Met, M)
n = 28 (5.45%)
Proline (Pro, P)
n = 26 (5.06%)
Phenylalanine (Phe, F)
n = 38 (7.39%)
Tyrosine (Tyr, Y)
n = 18 (3.5%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 15 (2.92%)
Glutamic acid (Glu, E)
n = 10 (1.95%)
Asparagine (Asn, N)
n = 17 (3.31%)
Glutamine (Gln, Q)
n = 8 (1.56%)
Histidine (His, H)
n = 19 (3.7%)
Lysine (Lys, K)
n = 8 (1.56%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
28 9 24 22 7 15 3 16 4 4 13 9 11 2 25 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 14 15 12 0 11 14 16 7 8 9 9 0 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 19 0 6 7 14 0 1 3 5 13 1 3 7 10 9
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 8 2 3 12 7 1 1 3 3 1 0 1 0 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
149 108 137 121
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
80 136 95 204
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 149 174 163
COX2 (size: 685 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 15 (6.61%)
Serine (Ser, S)
n = 15 (6.61%)
Threonine (Thr, T)
n = 12 (5.29%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 14 (6.17%)
Leucine (Leu, L)
n = 31 (13.66%)
Isoleucine (Ile, I)
n = 22 (9.69%)
Methionine (Met, M)
n = 11 (4.85%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 8 (3.52%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 10 (4.41%)
Glutamic acid (Glu, E)
n = 13 (5.73%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 12 (5.29%)
Lysine (Lys, K)
n = 5 (2.2%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 5 9 5 6 12 0 7 7 1 3 3 5 3 6 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 0 0 4 11 0 1 4 3 0 5 2 6 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 8 0 2 3 6 1 1 2 5 4 1 1 2 7 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 9 4 3 7 4 1 0 2 3 0 0 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
60 62 62 44
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
23 53 66 86
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 60 94 59
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 21 (8.08%)
Serine (Ser, S)
n = 11 (4.23%)
Threonine (Thr, T)
n = 24 (9.23%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 17 (6.54%)
Leucine (Leu, L)
n = 35 (13.46%)
Isoleucine (Ile, I)
n = 15 (5.77%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 21 (8.08%)
Tyrosine (Tyr, Y)
n = 10 (3.85%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 9 (3.46%)
Asparagine (Asn, N)
n = 6 (2.31%)
Glutamine (Gln, Q)
n = 10 (3.85%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 4 (1.54%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 7 7 5 3 17 0 7 8 2 2 5 10 0 13 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 5 11 5 0 1 10 8 0 5 1 6 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 13 1 1 1 4 2 3 0 4 6 1 3 4 2 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 8 1 3 2 4 0 1 0 4 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 68 60 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 65 60 96
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 75 112 63
CYTB (size: 1143 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (6.58%)
Alanine (Ala, A)
n = 21 (5.53%)
Serine (Ser, S)
n = 26 (6.84%)
Threonine (Thr, T)
n = 28 (7.37%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 16 (4.21%)
Leucine (Leu, L)
n = 65 (17.11%)
Isoleucine (Ile, I)
n = 34 (8.95%)
Methionine (Met, M)
n = 14 (3.68%)
Proline (Pro, P)
n = 22 (5.79%)
Phenylalanine (Phe, F)
n = 28 (7.37%)
Tyrosine (Tyr, Y)
n = 15 (3.95%)
Tryptophan (Trp, W)
n = 12 (3.16%)
Aspartic acid (Asp, D)
n = 8 (2.11%)
Glutamic acid (Glu, E)
n = 7 (1.84%)
Asparagine (Asn, N)
n = 18 (4.74%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 13 (3.42%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
25 9 12 18 17 17 0 12 7 1 5 8 3 0 14 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 3 4 7 10 0 3 11 9 2 2 5 14 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 10 0 5 12 9 0 0 0 8 7 0 1 2 16 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 5 2 7 1 8 1 2 2 3 1 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
77 103 103 98
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
48 97 79 157
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 132 132 106
ND1 (size: 969 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (4.04%)
Alanine (Ala, A)
n = 28 (8.7%)
Serine (Ser, S)
n = 19 (5.9%)
Threonine (Thr, T)
n = 26 (8.07%)
Cysteine (Cys, C)
n = 2 (0.62%)
Valine (Val, V)
n = 13 (4.04%)
Leucine (Leu, L)
n = 63 (19.57%)
Isoleucine (Ile, I)
n = 25 (7.76%)
Methionine (Met, M)
n = 18 (5.59%)
Proline (Pro, P)
n = 23 (7.14%)
Phenylalanine (Phe, F)
n = 18 (5.59%)
Tyrosine (Tyr, Y)
n = 14 (4.35%)
Tryptophan (Trp, W)
n = 9 (2.8%)
Aspartic acid (Asp, D)
n = 4 (1.24%)
Glutamic acid (Glu, E)
n = 11 (3.42%)
Asparagine (Asn, N)
n = 10 (3.11%)
Glutamine (Gln, Q)
n = 6 (1.86%)
Histidine (His, H)
n = 4 (1.24%)
Lysine (Lys, K)
n = 8 (2.48%)
Arginine (Arg, R)
n = 8 (2.48%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 7 16 7 12 26 2 16 5 1 4 4 5 0 10 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 2 11 14 1 3 2 5 3 2 9 12 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 13 0 3 4 9 0 0 3 7 7 0 0 6 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 10 1 4 0 7 1 0 4 3 1 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
69 88 90 76
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 93 58 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 86 151 74
ND2 (size: 1035 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.78%)
Alanine (Ala, A)
n = 25 (7.27%)
Serine (Ser, S)
n = 24 (6.98%)
Threonine (Thr, T)
n = 54 (15.7%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 5 (1.45%)
Leucine (Leu, L)
n = 63 (18.31%)
Isoleucine (Ile, I)
n = 37 (10.76%)
Methionine (Met, M)
n = 21 (6.1%)
Proline (Pro, P)
n = 24 (6.98%)
Phenylalanine (Phe, F)
n = 13 (3.78%)
Tyrosine (Tyr, Y)
n = 6 (1.74%)
Tryptophan (Trp, W)
n = 11 (3.2%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 8 (2.33%)
Glutamine (Gln, Q)
n = 10 (2.91%)
Histidine (His, H)
n = 8 (2.33%)
Lysine (Lys, K)
n = 11 (3.2%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 18 19 7 7 30 3 16 10 0 3 0 2 0 9 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 5 12 8 0 6 1 4 2 3 8 13 0 14
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
21 19 0 5 7 6 1 2 3 4 2 0 0 2 6 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 4 1 1 1 10 1 1 0 3 0 0 0 0 1 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
50 93 136 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 122 51 139
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 94 155 85
ND3 (size: 1035 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.78%)
Alanine (Ala, A)
n = 25 (7.27%)
Serine (Ser, S)
n = 24 (6.98%)
Threonine (Thr, T)
n = 54 (15.7%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 5 (1.45%)
Leucine (Leu, L)
n = 63 (18.31%)
Isoleucine (Ile, I)
n = 37 (10.76%)
Methionine (Met, M)
n = 21 (6.1%)
Proline (Pro, P)
n = 24 (6.98%)
Phenylalanine (Phe, F)
n = 13 (3.78%)
Tyrosine (Tyr, Y)
n = 6 (1.74%)
Tryptophan (Trp, W)
n = 11 (3.2%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 8 (2.33%)
Glutamine (Gln, Q)
n = 10 (2.91%)
Histidine (His, H)
n = 8 (2.33%)
Lysine (Lys, K)
n = 11 (3.2%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 18 19 7 7 30 3 16 10 0 3 0 2 0 9 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 5 12 8 0 6 1 4 2 3 8 13 0 14
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
21 19 0 5 7 6 1 2 3 4 2 0 0 2 6 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 4 1 1 1 10 1 1 0 3 0 0 0 0 1 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
50 93 136 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 122 51 139
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 94 155 85
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (4.14%)
Alanine (Ala, A)
n = 31 (6.75%)
Serine (Ser, S)
n = 36 (7.84%)
Threonine (Thr, T)
n = 49 (10.68%)
Cysteine (Cys, C)
n = 2 (0.44%)
Valine (Val, V)
n = 11 (2.4%)
Leucine (Leu, L)
n = 100 (21.79%)
Isoleucine (Ile, I)
n = 39 (8.5%)
Methionine (Met, M)
n = 27 (5.88%)
Proline (Pro, P)
n = 27 (5.88%)
Phenylalanine (Phe, F)
n = 22 (4.79%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 9 (1.96%)
Aspartic acid (Asp, D)
n = 2 (0.44%)
Glutamic acid (Glu, E)
n = 9 (1.96%)
Asparagine (Asn, N)
n = 19 (4.14%)
Glutamine (Gln, Q)
n = 9 (1.96%)
Histidine (His, H)
n = 13 (2.83%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 12 (2.61%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
22 17 24 22 15 31 3 28 9 0 7 0 4 0 11 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 1 7 20 4 0 3 11 5 0 4 7 16 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
26 15 0 7 8 14 0 1 6 3 11 0 1 4 15 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 9 0 0 2 8 2 2 4 5 1 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 132 151 105
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
49 136 76 199
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 164 181 105
ND4L (size: 292 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.17%)
Alanine (Ala, A)
n = 7 (7.29%)
Serine (Ser, S)
n = 6 (6.25%)
Threonine (Thr, T)
n = 15 (15.63%)
Cysteine (Cys, C)
n = 2 (2.08%)
Valine (Val, V)
n = 2 (2.08%)
Leucine (Leu, L)
n = 23 (23.96%)
Isoleucine (Ile, I)
n = 6 (6.25%)
Methionine (Met, M)
n = 9 (9.38%)
Proline (Pro, P)
n = 4 (4.17%)
Phenylalanine (Phe, F)
n = 5 (5.21%)
Tyrosine (Tyr, Y)
n = 1 (1.04%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.04%)
Glutamic acid (Glu, E)
n = 2 (2.08%)
Asparagine (Asn, N)
n = 2 (2.08%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 4 (4.17%)
Lysine (Lys, K)
n = 2 (2.08%)
Arginine (Arg, R)
n = 2 (2.08%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 4 8 5 2 10 0 6 0 0 2 0 0 0 3 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 1 2 3 2 0 0 3 1 0 0 0 3 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 7 1 1 1 1 1 0 2 0 1 0 0 2 0 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 0 0 1 2 0 0 1 1 0 0 0 0 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
16 27 36 18
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
10 30 12 45
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 24 43 26
ND5 (size: 1824 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (4.94%)
Alanine (Ala, A)
n = 46 (7.58%)
Serine (Ser, S)
n = 40 (6.59%)
Threonine (Thr, T)
n = 71 (11.7%)
Cysteine (Cys, C)
n = 7 (1.15%)
Valine (Val, V)
n = 18 (2.97%)
Leucine (Leu, L)
n = 97 (15.98%)
Isoleucine (Ile, I)
n = 53 (8.73%)
Methionine (Met, M)
n = 37 (6.1%)
Proline (Pro, P)
n = 30 (4.94%)
Phenylalanine (Phe, F)
n = 38 (6.26%)
Tyrosine (Tyr, Y)
n = 9 (1.48%)
Tryptophan (Trp, W)
n = 14 (2.31%)
Aspartic acid (Asp, D)
n = 11 (1.81%)
Glutamic acid (Glu, E)
n = 11 (1.81%)
Asparagine (Asn, N)
n = 29 (4.78%)
Glutamine (Gln, Q)
n = 18 (2.97%)
Histidine (His, H)
n = 15 (2.47%)
Lysine (Lys, K)
n = 23 (3.79%)
Arginine (Arg, R)
n = 10 (1.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
27 26 30 21 16 36 4 18 17 1 6 7 5 0 15 23
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 5 2 10 24 12 0 4 11 11 4 5 11 14 0 14
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
28 27 2 5 6 16 1 2 10 4 5 5 2 11 18 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 11 0 6 5 17 6 1 3 6 0 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
116 150 225 117
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
73 175 117 243
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
32 206 230 140
ND6 (size: 516 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (16.37%)
Alanine (Ala, A)
n = 8 (4.68%)
Serine (Ser, S)
n = 12 (7.02%)
Threonine (Thr, T)
n = 4 (2.34%)
Cysteine (Cys, C)
n = 5 (2.92%)
Valine (Val, V)
n = 23 (13.45%)
Leucine (Leu, L)
n = 35 (20.47%)
Isoleucine (Ile, I)
n = 10 (5.85%)
Methionine (Met, M)
n = 7 (4.09%)
Proline (Pro, P)
n = 4 (2.34%)
Phenylalanine (Phe, F)
n = 12 (7.02%)
Tyrosine (Tyr, Y)
n = 8 (4.68%)
Tryptophan (Trp, W)
n = 1 (0.58%)
Aspartic acid (Asp, D)
n = 4 (2.34%)
Glutamic acid (Glu, E)
n = 4 (2.34%)
Asparagine (Asn, N)
n = 2 (1.17%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 4 (2.34%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 0 2 2 0 2 1 15 0 0 15 0 1 7 12 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 4 1 4 1 2 1 11 1 4 12 2 0 0 2 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 0 1 4 1 1 2 4 0 8 0 1 15 1 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 3 4 0 0 0 3 0 1 0 0 1 0 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 13 28 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 24 18 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
51 6 29 86
Total protein-coding genes (size: 11355 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 220 (5.82%)
Alanine (Ala, A)
n = 265 (7.01%)
Serine (Ser, S)
n = 242 (6.4%)
Threonine (Thr, T)
n = 370 (9.78%)
Cysteine (Cys, C)
n = 28 (0.74%)
Valine (Val, V)
n = 164 (4.34%)
Leucine (Leu, L)
n = 658 (17.4%)
Isoleucine (Ile, I)
n = 315 (8.33%)
Methionine (Met, M)
n = 205 (5.42%)
Proline (Pro, P)
n = 215 (5.68%)
Phenylalanine (Phe, F)
n = 224 (5.92%)
Tyrosine (Tyr, Y)
n = 113 (2.99%)
Tryptophan (Trp, W)
n = 103 (2.72%)
Aspartic acid (Asp, D)
n = 68 (1.8%)
Glutamic acid (Glu, E)
n = 90 (2.38%)
Asparagine (Asn, N)
n = 135 (3.57%)
Glutamine (Gln, Q)
n = 92 (2.43%)
Histidine (His, H)
n = 109 (2.88%)
Lysine (Lys, K)
n = 87 (2.3%)
Arginine (Arg, R)
n = 73 (1.93%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
198 117 173 133 99 221 22 156 79 13 63 38 51 12 133 91
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
32 14 14 56 118 87 4 45 73 70 32 41 63 106 5 79
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
137 149 5 43 54 88 8 14 35 54 59 10 27 50 85 39
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
70 75 15 33 35 73 14 11 22 35 5 0 2 4 1 93
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
807 964 1163 849
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
475 1043 699 1566
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
207 1110 1460 1006 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​L​a​c​e​r​t​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ v​i​r​i​d​i​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.