Viewing data for Oncorhynchus kisutch


Scientific name Oncorhynchus kisutch
Common name Coho salmon
Maximum lifespan 5.00 years (Oncorhynchus kisutch@AnAge)

Total mtDNA (size: 16659 bases) GC AT G C A T
Base content (bases) 7704 8955 4839 2865 4322 4633
Base content per 1 kb (bases) 462 538 290 172 259 278
Base content (%) 46.2% 53.8%
Total protein-coding genes (size: 11413 bases) GC AT G C A T
Base content (bases) 5285 6128 3509 1776 3096 3032
Base content per 1 kb (bases) 463 537 307 156 271 266
Base content (%) 46.3% 53.7%
D-loop (size: 1002 bases) GC AT G C A T
Base content (bases) 388 614 228 160 310 304
Base content per 1 kb (bases) 387 613 228 160 309 303
Base content (%) 38.7% 61.3%
Total tRNA-coding genes (size: 1541 bases) GC AT G C A T
Base content (bases) 707 834 397 310 379 455
Base content per 1 kb (bases) 459 541 258 201 246 295
Base content (%) 45.9% 54.1%
Total rRNA-coding genes (size: 2637 bases) GC AT G C A T
Base content (bases) 1284 1353 684 600 523 830
Base content per 1 kb (bases) 487 513 259 228 198 315
Base content (%) 48.7% 51.3%
12S rRNA gene (size: 947 bases) GC AT G C A T
Base content (bases) 478 469 259 219 188 281
Base content per 1 kb (bases) 505 495 273 231 199 297
Base content (%) 50.5% 49.5%
16S rRNA gene (size: 1690 bases) GC AT G C A T
Base content (bases) 806 884 425 381 335 549
Base content per 1 kb (bases) 477 523 251 225 198 325
Base content (%) 47.7% 52.3%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 318 366 224 94 192 174
Base content per 1 kb (bases) 465 535 327 137 281 254
Base content (%) 46.5% 53.5%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 77 91 55 22 42 49
Base content per 1 kb (bases) 458 542 327 131 250 292
Base content (%) 45.8% 54.2%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 710 841 417 293 459 382
Base content per 1 kb (bases) 458 542 269 189 296 246
Base content (%) 45.8% 54.2%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 305 386 189 116 198 188
Base content per 1 kb (bases) 441 559 274 168 287 272
Base content (%) 44.1% 55.9%
COX3 (size: 786 bases) GC AT G C A T
Base content (bases) 369 417 237 132 222 195
Base content per 1 kb (bases) 469 531 302 168 282 248
Base content (%) 46.9% 53.1%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 547 594 356 191 325 269
Base content per 1 kb (bases) 479 521 312 167 285 236
Base content (%) 47.9% 52.1%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 471 504 310 161 265 239
Base content per 1 kb (bases) 483 517 318 165 272 245
Base content (%) 48.3% 51.7%
ND2 (size: 1050 bases) GC AT G C A T
Base content (bases) 475 575 333 142 288 287
Base content per 1 kb (bases) 452 548 317 135 274 273
Base content (%) 45.2% 54.8%
ND3 (size: 350 bases) GC AT G C A T
Base content (bases) 164 186 111 53 102 84
Base content per 1 kb (bases) 469 531 317 151 291 240
Base content (%) 46.9% 53.1%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 636 745 429 207 373 372
Base content per 1 kb (bases) 461 539 311 150 270 269
Base content (%) 46.1% 53.9%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 147 150 97 50 79 71
Base content per 1 kb (bases) 495 505 327 168 266 239
Base content (%) 49.5% 50.5%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 815 1024 567 248 490 534
Base content per 1 kb (bases) 443 557 308 135 266 290
Base content (%) 44.3% 55.7%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 256 266 187 69 67 199
Base content per 1 kb (bases) 490 510 358 132 128 381
Base content (%) 49.0% 51.0%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 19 (8.37%)
Serine (Ser, S)
n = 8 (3.52%)
Threonine (Thr, T)
n = 22 (9.69%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 54 (23.79%)
Isoleucine (Ile, I)
n = 20 (8.81%)
Methionine (Met, M)
n = 9 (3.96%)
Proline (Pro, P)
n = 17 (7.49%)
Phenylalanine (Phe, F)
n = 12 (5.29%)
Tyrosine (Tyr, Y)
n = 4 (1.76%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 9 (3.96%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 11 4 11 11 22 3 6 6 3 4 3 4 2 8 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 0 4 9 6 0 3 6 1 1 2 8 5 2 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 10 1 2 2 0 0 0 4 1 3 2 1 4 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 4 0 0 1 1 0 0 2 4 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
48 82 65 33
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 62 32 108
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 80 77 51
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFAILVFSWLVFLTVIPPKVLGHTFTNEPTSQSTEKAKPEPWNWPWH*
Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.82%)
Alanine (Ala, A)
n = 3 (5.45%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 5 (9.09%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 4 (7.27%)
Leucine (Leu, L)
n = 5 (9.09%)
Isoleucine (Ile, I)
n = 2 (3.64%)
Methionine (Met, M)
n = 1 (1.82%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 3 (5.45%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 0 0 2 1 1 1 2 0 2 1 1 0 1 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 2 1 0 0 0 1 0 0 3 4 2 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 0 1 0 0 2 0 0 1 0 0 0 0 1 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 1 0 0 3 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
11 17 15 13
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
7 19 14 16
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 19 20 13
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 47 (9.11%)
Serine (Ser, S)
n = 30 (5.81%)
Threonine (Thr, T)
n = 36 (6.98%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 40 (7.75%)
Leucine (Leu, L)
n = 62 (12.02%)
Isoleucine (Ile, I)
n = 41 (7.95%)
Methionine (Met, M)
n = 24 (4.65%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 14 (2.71%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 21 13 13 10 18 9 12 3 5 11 11 15 3 24 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
11 0 1 16 20 10 1 6 12 15 14 4 7 12 5 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 15 1 6 10 9 0 1 4 7 11 1 0 4 11 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 8 3 5 9 6 2 1 0 6 1 0 0 1 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
159 113 129 116
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 136 94 209
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
56 168 159 134
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 16 (6.99%)
Serine (Ser, S)
n = 16 (6.99%)
Threonine (Thr, T)
n = 10 (4.37%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 22 (9.61%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 18 (7.86%)
Methionine (Met, M)
n = 12 (5.24%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 8 (3.49%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 4 (1.75%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 5 (2.18%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 13 8 13 6 4 1 4 8 0 8 6 6 2 3 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 1 3 6 4 3 3 1 4 1 4 6 3 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 3 0 5 6 2 0 0 3 6 3 0 0 2 2 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 13 2 4 9 3 2 1 0 5 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 62 52 41
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 53 64 88
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 74 72 68
COX3 (size: 786 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.43%)
Alanine (Ala, A)
n = 21 (8.05%)
Serine (Ser, S)
n = 12 (4.6%)
Threonine (Thr, T)
n = 25 (9.58%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 18 (6.9%)
Leucine (Leu, L)
n = 33 (12.64%)
Isoleucine (Ile, I)
n = 13 (4.98%)
Methionine (Met, M)
n = 6 (2.3%)
Proline (Pro, P)
n = 12 (4.6%)
Phenylalanine (Phe, F)
n = 24 (9.2%)
Tyrosine (Tyr, Y)
n = 12 (4.6%)
Tryptophan (Trp, W)
n = 12 (4.6%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.83%)
Asparagine (Asn, N)
n = 2 (0.77%)
Glutamine (Gln, Q)
n = 9 (3.45%)
Histidine (His, H)
n = 16 (6.13%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 6 4 9 4 14 1 4 9 0 6 7 4 1 11 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 2 5 9 7 0 4 13 3 2 2 6 4 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 9 0 4 1 3 1 0 3 2 10 0 1 2 0 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 8 2 0 5 1 1 0 0 4 1 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 70 51 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 67 57 94
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 100 87 63
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (7.12%)
Alanine (Ala, A)
n = 36 (9.5%)
Serine (Ser, S)
n = 23 (6.07%)
Threonine (Thr, T)
n = 21 (5.54%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 26 (6.86%)
Leucine (Leu, L)
n = 58 (15.3%)
Isoleucine (Ile, I)
n = 28 (7.39%)
Methionine (Met, M)
n = 10 (2.64%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 30 (7.92%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 5 (1.32%)
Asparagine (Asn, N)
n = 17 (4.49%)
Glutamine (Gln, Q)
n = 7 (1.85%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 19 6 13 17 16 3 6 7 0 5 9 7 5 10 20
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 3 7 21 6 2 1 9 11 6 3 8 9 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 6 1 7 8 5 2 1 0 3 11 3 3 5 12 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 4 1 5 6 7 2 0 0 8 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
105 97 86 92
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 100 75 152
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
33 159 108 80
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 36 (11.11%)
Serine (Ser, S)
n = 21 (6.48%)
Threonine (Thr, T)
n = 20 (6.17%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 22 (6.79%)
Leucine (Leu, L)
n = 65 (20.06%)
Isoleucine (Ile, I)
n = 22 (6.79%)
Methionine (Met, M)
n = 9 (2.78%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 16 (4.94%)
Tyrosine (Tyr, Y)
n = 12 (3.7%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 10 (3.09%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 14 6 15 12 27 4 6 6 1 6 4 10 2 10 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 8 17 10 1 0 6 4 8 8 10 6 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 7 1 2 10 4 0 0 5 3 9 2 1 3 7 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 7 4 2 2 7 0 1 0 4 3 0 0 0 1 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
91 101 73 60
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 96 56 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
31 113 110 71
ND2 (size: 1050 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.87%)
Alanine (Ala, A)
n = 40 (11.46%)
Serine (Ser, S)
n = 24 (6.88%)
Threonine (Thr, T)
n = 42 (12.03%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 11 (3.15%)
Leucine (Leu, L)
n = 80 (22.92%)
Isoleucine (Ile, I)
n = 24 (6.88%)
Methionine (Met, M)
n = 12 (3.44%)
Proline (Pro, P)
n = 20 (5.73%)
Phenylalanine (Phe, F)
n = 10 (2.87%)
Tyrosine (Tyr, Y)
n = 8 (2.29%)
Tryptophan (Trp, W)
n = 11 (3.15%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 8 (2.29%)
Asparagine (Asn, N)
n = 10 (2.87%)
Glutamine (Gln, Q)
n = 12 (3.44%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 8 (2.29%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 6 7 20 20 21 2 11 11 1 3 1 4 3 8 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 1 7 16 15 2 1 6 5 5 4 7 9 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 14 1 6 5 8 0 0 5 4 4 2 6 3 7 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 8 0 0 0 8 0 1 1 2 0 0 0 0 1 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 106 101 67
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 121 54 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
28 106 132 84
ND3 (size: 1050 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (4.87%)
Alanine (Ala, A)
n = 40 (11.46%)
Serine (Ser, S)
n = 24 (6.88%)
Threonine (Thr, T)
n = 42 (12.03%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 11 (3.15%)
Leucine (Leu, L)
n = 80 (22.92%)
Isoleucine (Ile, I)
n = 24 (6.88%)
Methionine (Met, M)
n = 12 (3.44%)
Proline (Pro, P)
n = 20 (5.73%)
Phenylalanine (Phe, F)
n = 10 (2.87%)
Tyrosine (Tyr, Y)
n = 8 (2.29%)
Tryptophan (Trp, W)
n = 11 (3.15%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 8 (2.29%)
Asparagine (Asn, N)
n = 10 (2.87%)
Glutamine (Gln, Q)
n = 12 (3.44%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 8 (2.29%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 6 7 20 20 21 2 11 11 1 3 1 4 3 8 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 1 7 16 15 2 1 6 5 5 4 7 9 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 14 1 6 5 8 0 0 5 4 4 2 6 3 7 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 8 0 0 0 8 0 1 1 2 0 0 0 0 1 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 106 101 67
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 121 54 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
28 106 132 84
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (5.88%)
Alanine (Ala, A)
n = 37 (8.06%)
Serine (Ser, S)
n = 32 (6.97%)
Threonine (Thr, T)
n = 36 (7.84%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 14 (3.05%)
Leucine (Leu, L)
n = 96 (20.92%)
Isoleucine (Ile, I)
n = 37 (8.06%)
Methionine (Met, M)
n = 28 (6.1%)
Proline (Pro, P)
n = 26 (5.66%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 20 (4.36%)
Aspartic acid (Asp, D)
n = 5 (1.09%)
Glutamic acid (Glu, E)
n = 12 (2.61%)
Asparagine (Asn, N)
n = 12 (2.61%)
Glutamine (Gln, Q)
n = 12 (2.61%)
Histidine (His, H)
n = 11 (2.4%)
Lysine (Lys, K)
n = 9 (1.96%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 20 20 16 22 31 10 17 11 1 3 3 6 2 6 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 1 4 7 18 11 1 4 9 8 6 5 15 6 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 10 4 4 11 6 3 3 5 4 10 3 0 5 7 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 11 1 1 4 8 1 1 4 5 1 0 0 0 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
95 139 130 96
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
71 123 75 191
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
41 167 167 85
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 6 (6.12%)
Alanine (Ala, A)
n = 14 (14.29%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 7 (7.14%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 6 (6.12%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 1 (1.02%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 4 3 10 7 1 2 3 0 0 0 2 1 4 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 1 1 7 5 1 2 1 2 1 1 0 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 2 1 1 1 4 0 0 3 0 1 0 0 0 1 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 3 0 0 1 0 0 0 2 1 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
27 33 19 20
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
16 29 14 40
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 35 38 19
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 32 (5.23%)
Alanine (Ala, A)
n = 51 (8.33%)
Serine (Ser, S)
n = 43 (7.03%)
Threonine (Thr, T)
n = 67 (10.95%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 23 (3.76%)
Leucine (Leu, L)
n = 96 (15.69%)
Isoleucine (Ile, I)
n = 51 (8.33%)
Methionine (Met, M)
n = 29 (4.74%)
Proline (Pro, P)
n = 28 (4.58%)
Phenylalanine (Phe, F)
n = 41 (6.7%)
Tyrosine (Tyr, Y)
n = 8 (1.31%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 12 (1.96%)
Glutamic acid (Glu, E)
n = 11 (1.8%)
Asparagine (Asn, N)
n = 32 (5.23%)
Glutamine (Gln, Q)
n = 20 (3.27%)
Histidine (His, H)
n = 19 (3.1%)
Lysine (Lys, K)
n = 20 (3.27%)
Arginine (Arg, R)
n = 9 (1.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
32 19 21 19 25 29 5 15 19 1 2 8 9 4 14 27
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 0 6 11 27 9 4 4 9 16 3 5 10 8 5 17
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
31 16 3 5 12 12 2 3 9 3 5 3 3 9 23 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 9 2 3 9 19 1 0 1 6 2 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
129 154 211 119
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
73 177 123 240
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
46 236 200 131
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (13.87%)
Alanine (Ala, A)
n = 19 (10.98%)
Serine (Ser, S)
n = 12 (6.94%)
Threonine (Thr, T)
n = 6 (3.47%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 28 (16.18%)
Leucine (Leu, L)
n = 31 (17.92%)
Isoleucine (Ile, I)
n = 2 (1.16%)
Methionine (Met, M)
n = 4 (2.31%)
Proline (Pro, P)
n = 4 (2.31%)
Phenylalanine (Phe, F)
n = 10 (5.78%)
Tyrosine (Tyr, Y)
n = 8 (4.62%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 3 (1.73%)
Glutamic acid (Glu, E)
n = 6 (3.47%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 2 (1.16%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 5 (2.89%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 0 8 0 1 2 9 0 0 8 0 4 16 9 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 2 0 8 0 5 6 7 0 1 16 2 2 0 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 3 1 6 1 1 2 2 0 7 1 3 11 0 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 4 3 0 0 1 2 0 1 2 0 0 0 1 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
80 22 16 56
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 39 22 75
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
69 8 29 68
Total protein-coding genes (size: 11435 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 247 (6.48%)
Alanine (Ala, A)
n = 348 (9.14%)
Serine (Ser, S)
n = 240 (6.3%)
Threonine (Thr, T)
n = 309 (8.11%)
Cysteine (Cys, C)
n = 27 (0.71%)
Valine (Val, V)
n = 228 (5.99%)
Leucine (Leu, L)
n = 657 (17.25%)
Isoleucine (Ile, I)
n = 270 (7.09%)
Methionine (Met, M)
n = 151 (3.96%)
Proline (Pro, P)
n = 213 (5.59%)
Phenylalanine (Phe, F)
n = 226 (5.93%)
Tyrosine (Tyr, Y)
n = 110 (2.89%)
Tryptophan (Trp, W)
n = 121 (3.18%)
Aspartic acid (Asp, D)
n = 73 (1.92%)
Glutamic acid (Glu, E)
n = 105 (2.76%)
Asparagine (Asn, N)
n = 118 (3.1%)
Glutamine (Gln, Q)
n = 100 (2.63%)
Histidine (His, H)
n = 109 (2.86%)
Lysine (Lys, K)
n = 74 (1.94%)
Arginine (Arg, R)
n = 75 (1.97%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
135 135 93 143 144 199 46 98 87 13 60 53 74 41 111 115
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
58 8 19 79 158 90 21 35 75 73 64 45 86 68 14 73
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
122 99 15 50 72 56 10 10 42 41 69 20 27 38 80 31
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
78 84 21 26 47 64 10 7 12 46 10 0 0 6 3 101
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1001 1029 974 806
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
522 1058 698 1532
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
373 1307 1238 892 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​O​n​c​o​r​h​y​n​c​h​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ k​i​s​u​t​c​h​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.