Viewing data for Polypterus senegalus
| Scientific name | Polypterus senegalus |
| Common name | Gray bichir |
| Maximum lifespan | 34.00 years (Polypterus senegalus@AnAge) |
| Total mtDNA (size: 16627 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 6656 | 9971 | 4256 | 2400 | 4768 | 5203 |
| Base content per 1 kb (bases) | 400 | 600 | 256 | 144 | 287 | 313 |
| Base content (%) | 40.0% | 60.0% | ||||
| Total protein-coding genes (size: 11362 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 4535 | 6827 | 3045 | 1490 | 3413 | 3414 |
| Base content per 1 kb (bases) | 399 | 601 | 268 | 131 | 300 | 300 |
| Base content (%) | 39.9% | 60.1% | ||||
| D-loop (size: 1073 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 393 | 680 | 267 | 126 | 328 | 352 |
| Base content per 1 kb (bases) | 366 | 634 | 249 | 117 | 306 | 328 |
| Base content (%) | 36.6% | 63.4% | ||||
| Total tRNA-coding genes (size: 1547 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 623 | 924 | 358 | 265 | 416 | 508 |
| Base content per 1 kb (bases) | 403 | 597 | 231 | 171 | 269 | 328 |
| Base content (%) | 40.3% | 59.7% | ||||
| Total rRNA-coding genes (size: 2602 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1085 | 1517 | 574 | 511 | 600 | 917 |
| Base content per 1 kb (bases) | 417 | 583 | 221 | 196 | 231 | 352 |
| Base content (%) | 41.7% | 58.3% | ||||
| 12S rRNA gene (size: 947 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 428 | 519 | 226 | 202 | 219 | 300 |
| Base content per 1 kb (bases) | 452 | 548 | 239 | 213 | 231 | 317 |
| Base content (%) | 45.2% | 54.8% | ||||
| 16S rRNA gene (size: 1655 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 657 | 998 | 348 | 309 | 381 | 617 |
| Base content per 1 kb (bases) | 397 | 603 | 210 | 187 | 230 | 373 |
| Base content (%) | 39.7% | 60.3% | ||||
| ATP6 (size: 683 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 251 | 432 | 177 | 74 | 226 | 206 |
| Base content per 1 kb (bases) | 367 | 633 | 259 | 108 | 331 | 302 |
| Base content (%) | 36.7% | 63.3% | ||||
| ATP8 (size: 168 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 59 | 109 | 44 | 15 | 53 | 56 |
| Base content per 1 kb (bases) | 351 | 649 | 262 | 89 | 315 | 333 |
| Base content (%) | 35.1% | 64.9% | ||||
| COX1 (size: 1557 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 666 | 891 | 396 | 270 | 474 | 417 |
| Base content per 1 kb (bases) | 428 | 572 | 254 | 173 | 304 | 268 |
| Base content (%) | 42.8% | 57.2% | ||||
| COX2 (size: 691 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 270 | 421 | 173 | 97 | 196 | 225 |
| Base content per 1 kb (bases) | 391 | 609 | 250 | 140 | 284 | 326 |
| Base content (%) | 39.1% | 60.9% | ||||
| COX3 (size: 785 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 338 | 447 | 206 | 132 | 234 | 213 |
| Base content per 1 kb (bases) | 431 | 569 | 262 | 168 | 298 | 271 |
| Base content (%) | 43.1% | 56.9% | ||||
| CYTB (size: 1141 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 460 | 681 | 314 | 146 | 353 | 328 |
| Base content per 1 kb (bases) | 403 | 597 | 275 | 128 | 309 | 287 |
| Base content (%) | 40.3% | 59.7% | ||||
| ND1 (size: 959 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 395 | 564 | 277 | 118 | 287 | 277 |
| Base content per 1 kb (bases) | 412 | 588 | 289 | 123 | 299 | 289 |
| Base content (%) | 41.2% | 58.8% | ||||
| ND2 (size: 1036 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 413 | 623 | 295 | 118 | 295 | 328 |
| Base content per 1 kb (bases) | 399 | 601 | 285 | 114 | 285 | 317 |
| Base content (%) | 39.9% | 60.1% | ||||
| ND3 (size: 346 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 141 | 205 | 94 | 47 | 114 | 91 |
| Base content per 1 kb (bases) | 408 | 592 | 272 | 136 | 329 | 263 |
| Base content (%) | 40.8% | 59.2% | ||||
| ND4 (size: 1375 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 524 | 851 | 359 | 165 | 433 | 418 |
| Base content per 1 kb (bases) | 381 | 619 | 261 | 120 | 315 | 304 |
| Base content (%) | 38.1% | 61.9% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 128 | 169 | 91 | 37 | 93 | 76 |
| Base content per 1 kb (bases) | 431 | 569 | 306 | 125 | 313 | 256 |
| Base content (%) | 43.1% | 56.9% | ||||
| ND5 (size: 1842 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 692 | 1150 | 477 | 215 | 570 | 580 |
| Base content per 1 kb (bases) | 376 | 624 | 259 | 117 | 309 | 315 |
| Base content (%) | 37.6% | 62.4% | ||||
| ND6 (size: 504 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 203 | 301 | 145 | 58 | 92 | 209 |
| Base content per 1 kb (bases) | 403 | 597 | 288 | 115 | 183 | 415 |
| Base content (%) | 40.3% | 59.7% | ||||
| ATP6 (size: 683 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (3.1%) 
Alanine (Ala, A)
n = 20 (8.85%) 
Serine (Ser, S)
n = 7 (3.1%) 
Threonine (Thr, T)
n = 25 (11.06%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 11 (4.87%) 
Leucine (Leu, L)
n = 53 (23.45%) 
Isoleucine (Ile, I)
n = 24 (10.62%) 
Methionine (Met, M)
n = 10 (4.42%) 
Proline (Pro, P)
n = 15 (6.64%) 
Phenylalanine (Phe, F)
n = 11 (4.87%) 
Tyrosine (Tyr, Y)
n = 3 (1.33%) 
Tryptophan (Trp, W)
n = 5 (2.21%) 
Aspartic acid (Asp, D)
n = 1 (0.44%) 
Glutamic acid (Glu, E)
n = 4 (1.77%) 
Asparagine (Asn, N)
n = 10 (4.42%) 
Glutamine (Gln, Q)
n = 9 (3.98%) 
Histidine (His, H)
n = 4 (1.77%) 
Lysine (Lys, K)
n = 2 (0.88%) 
Arginine (Arg, R)
n = 6 (2.65%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 18 | 6 | 7 | 11 | 2 | 23 | 2 | 14 | 9 | 0 | 4 | 2 | 5 | 0 | 9 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 0 | 5 | 11 | 4 | 0 | 3 | 1 | 0 | 3 | 2 | 1 | 11 | 1 | 9 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 8 | 8 | 0 | 3 | 1 | 0 | 0 | 1 | 2 | 2 | 1 | 0 | 1 | 7 | 3 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 4 | 0 | 1 | 0 | 2 | 0 | 0 | 0 | 6 | 0 | 0 | 0 | 0 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 43 | 72 | 74 | 38 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 21 | 64 | 33 | 109 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 10 | 41 | 98 | 78 | ||||||||||||
| ATP8 (size: 168 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLNPDPWFIILIFTWTVFLTILPNKVIMHKTPNEPLTKDPSSLLTEIWSWPWH* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 6 (10.91%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (3.64%)
Leucine (Leu, L)
n = 7 (12.73%)
Isoleucine (Ile, I)
n = 6 (10.91%)
Methionine (Met, M)
n = 2 (3.64%)
Proline (Pro, P)
n = 8 (14.55%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 2 (3.64%)
Glutamic acid (Glu, E)
n = 2 (3.64%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 1 (1.82%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 5 | 1 | 1 | 3 | 1 | 1 | 0 | 2 | 1 | 0 | 1 | 1 | 0 | 0 | 3 | 0 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 2 | 3 | 1 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 2 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 2 | 1 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 2 | 0 | 0 | 2 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 6 | 16 | 21 | 13 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 6 | 16 | 14 | 20 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 3 | 12 | 21 | 20 | ||||||||||||
| COX1 (size: 1557 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 48 (9.27%)
Alanine (Ala, A)
n = 44 (8.49%)
Serine (Ser, S)
n = 30 (5.79%)
Threonine (Thr, T)
n = 38 (7.34%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 37 (7.14%)
Leucine (Leu, L)
n = 62 (11.97%)
Isoleucine (Ile, I)
n = 40 (7.72%)
Methionine (Met, M)
n = 28 (5.41%)
Proline (Pro, P)
n = 29 (5.6%)
Phenylalanine (Phe, F)
n = 39 (7.53%)
Tyrosine (Tyr, Y)
n = 20 (3.86%)
Tryptophan (Trp, W)
n = 17 (3.28%)
Aspartic acid (Asp, D)
n = 14 (2.7%)
Glutamic acid (Glu, E)
n = 12 (2.32%)
Asparagine (Asn, N)
n = 15 (2.9%)
Glutamine (Gln, Q)
n = 9 (1.74%)
Histidine (His, H)
n = 19 (3.67%)
Lysine (Lys, K)
n = 7 (1.35%)
Arginine (Arg, R)
n = 9 (1.74%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 33 | 7 | 25 | 14 | 10 | 16 | 5 | 14 | 8 | 1 | 8 | 7 | 16 | 6 | 17 | 22 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 1 | 8 | 19 | 16 | 1 | 8 | 13 | 17 | 10 | 6 | 7 | 16 | 0 | 9 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 14 | 13 | 2 | 7 | 10 | 10 | 0 | 0 | 3 | 13 | 7 | 0 | 3 | 7 | 8 | 7 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 12 | 9 | 3 | 10 | 4 | 7 | 0 | 0 | 3 | 5 | 1 | 0 | 1 | 0 | 0 | 17 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 155 | 111 | 132 | 121 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 79 | 138 | 96 | 206 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 36 | 147 | 189 | 147 | ||||||||||||
| COX2 (size: 691 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.49%)
Alanine (Ala, A)
n = 17 (7.42%)
Serine (Ser, S)
n = 18 (7.86%)
Threonine (Thr, T)
n = 18 (7.86%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 14 (6.11%)
Leucine (Leu, L)
n = 29 (12.66%)
Isoleucine (Ile, I)
n = 17 (7.42%)
Methionine (Met, M)
n = 12 (5.24%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 8 (3.49%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 12 (5.24%)
Glutamic acid (Glu, E)
n = 12 (5.24%)
Asparagine (Asn, N)
n = 7 (3.06%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 9 (3.93%)
Lysine (Lys, K)
n = 5 (2.18%)
Arginine (Arg, R)
n = 6 (2.62%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 12 | 5 | 8 | 9 | 1 | 9 | 1 | 8 | 7 | 1 | 7 | 2 | 4 | 1 | 5 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 2 | 4 | 5 | 8 | 0 | 1 | 2 | 4 | 1 | 5 | 3 | 6 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 3 | 13 | 0 | 3 | 3 | 9 | 0 | 0 | 3 | 5 | 3 | 0 | 1 | 4 | 3 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 6 | 12 | 0 | 6 | 6 | 5 | 0 | 0 | 1 | 4 | 1 | 0 | 0 | 0 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 63 | 57 | 62 | 48 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 24 | 64 | 61 | 81 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 10 | 52 | 102 | 66 | ||||||||||||
| COX3 (size: 785 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 23 (8.85%)
Serine (Ser, S)
n = 13 (5.0%)
Threonine (Thr, T)
n = 24 (9.23%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 17 (6.54%)
Leucine (Leu, L)
n = 35 (13.46%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 10 (3.85%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 22 (8.46%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 9 (3.46%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 15 (5.77%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 9 | 5 | 7 | 6 | 4 | 11 | 4 | 10 | 7 | 0 | 9 | 2 | 6 | 0 | 12 | 10 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 0 | 3 | 10 | 10 | 0 | 2 | 7 | 9 | 3 | 3 | 3 | 7 | 0 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 11 | 1 | 2 | 3 | 5 | 0 | 0 | 3 | 8 | 3 | 2 | 0 | 0 | 1 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 11 | 9 | 0 | 2 | 3 | 2 | 1 | 2 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 75 | 65 | 55 | 66 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 42 | 70 | 51 | 98 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 15 | 71 | 106 | 69 | ||||||||||||
| CYTB (size: 1141 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 23 (6.07%)
Alanine (Ala, A)
n = 28 (7.39%)
Serine (Ser, S)
n = 27 (7.12%)
Threonine (Thr, T)
n = 20 (5.28%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 18 (4.75%)
Leucine (Leu, L)
n = 53 (13.98%)
Isoleucine (Ile, I)
n = 45 (11.87%)
Methionine (Met, M)
n = 14 (3.69%)
Proline (Pro, P)
n = 23 (6.07%)
Phenylalanine (Phe, F)
n = 28 (7.39%)
Tyrosine (Tyr, Y)
n = 15 (3.96%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 10 (2.64%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 20 (5.28%)
Glutamine (Gln, Q)
n = 5 (1.32%)
Histidine (His, H)
n = 11 (2.9%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 9 (2.37%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 28 | 17 | 11 | 14 | 8 | 12 | 5 | 14 | 4 | 1 | 4 | 5 | 9 | 0 | 14 | 14 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 3 | 2 | 12 | 14 | 0 | 1 | 9 | 12 | 1 | 4 | 7 | 12 | 0 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 5 | 7 | 1 | 3 | 7 | 14 | 0 | 0 | 3 | 6 | 9 | 0 | 0 | 4 | 16 | 5 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 6 | 6 | 0 | 3 | 7 | 10 | 0 | 3 | 4 | 2 | 0 | 0 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 85 | 87 | 112 | 96 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 50 | 95 | 77 | 158 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 11 | 132 | 139 | 98 | ||||||||||||
| ND1 (size: 959 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 16 (5.03%)
Alanine (Ala, A)
n = 30 (9.43%)
Serine (Ser, S)
n = 21 (6.6%)
Threonine (Thr, T)
n = 25 (7.86%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 15 (4.72%)
Leucine (Leu, L)
n = 63 (19.81%)
Isoleucine (Ile, I)
n = 30 (9.43%)
Methionine (Met, M)
n = 10 (3.14%)
Proline (Pro, P)
n = 22 (6.92%)
Phenylalanine (Phe, F)
n = 18 (5.66%)
Tyrosine (Tyr, Y)
n = 10 (3.14%)
Tryptophan (Trp, W)
n = 9 (2.83%)
Aspartic acid (Asp, D)
n = 4 (1.26%)
Glutamic acid (Glu, E)
n = 10 (3.14%)
Asparagine (Asn, N)
n = 13 (4.09%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 2 (0.63%)
Lysine (Lys, K)
n = 8 (2.52%)
Arginine (Arg, R)
n = 7 (2.2%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 21 | 9 | 9 | 10 | 19 | 20 | 2 | 12 | 5 | 1 | 3 | 2 | 9 | 1 | 10 | 8 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 6 | 10 | 14 | 0 | 2 | 8 | 4 | 2 | 4 | 6 | 11 | 1 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 10 | 11 | 2 | 5 | 6 | 9 | 0 | 0 | 1 | 7 | 3 | 0 | 0 | 9 | 4 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 10 | 0 | 1 | 3 | 8 | 0 | 0 | 2 | 5 | 0 | 0 | 0 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 75 | 88 | 87 | 69 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 33 | 97 | 53 | 136 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 10 | 92 | 136 | 81 | ||||||||||||
| ND2 (size: 1036 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 19 (5.52%)
Alanine (Ala, A)
n = 31 (9.01%)
Serine (Ser, S)
n = 27 (7.85%)
Threonine (Thr, T)
n = 38 (11.05%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (2.33%)
Leucine (Leu, L)
n = 56 (16.28%)
Isoleucine (Ile, I)
n = 37 (10.76%)
Methionine (Met, M)
n = 26 (7.56%)
Proline (Pro, P)
n = 18 (5.23%)
Phenylalanine (Phe, F)
n = 15 (4.36%)
Tyrosine (Tyr, Y)
n = 8 (2.33%)
Tryptophan (Trp, W)
n = 11 (3.2%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 14 (4.07%)
Glutamine (Gln, Q)
n = 12 (3.49%)
Histidine (His, H)
n = 7 (2.03%)
Lysine (Lys, K)
n = 8 (2.33%)
Arginine (Arg, R)
n = 4 (1.16%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 27 | 10 | 23 | 10 | 11 | 18 | 3 | 13 | 11 | 1 | 5 | 1 | 1 | 1 | 9 | 6 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 0 | 4 | 16 | 11 | 0 | 0 | 7 | 10 | 2 | 6 | 5 | 7 | 0 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 12 | 20 | 0 | 6 | 9 | 6 | 0 | 0 | 6 | 3 | 5 | 2 | 1 | 5 | 9 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 5 | 5 | 0 | 0 | 1 | 7 | 1 | 0 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 64 | 83 | 129 | 69 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 40 | 108 | 55 | 142 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 14 | 104 | 144 | 83 | ||||||||||||
| ND3 (size: 1036 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 19 (5.52%)
Alanine (Ala, A)
n = 31 (9.01%)
Serine (Ser, S)
n = 27 (7.85%)
Threonine (Thr, T)
n = 38 (11.05%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (2.33%)
Leucine (Leu, L)
n = 56 (16.28%)
Isoleucine (Ile, I)
n = 37 (10.76%)
Methionine (Met, M)
n = 26 (7.56%)
Proline (Pro, P)
n = 18 (5.23%)
Phenylalanine (Phe, F)
n = 15 (4.36%)
Tyrosine (Tyr, Y)
n = 8 (2.33%)
Tryptophan (Trp, W)
n = 11 (3.2%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 14 (4.07%)
Glutamine (Gln, Q)
n = 12 (3.49%)
Histidine (His, H)
n = 7 (2.03%)
Lysine (Lys, K)
n = 8 (2.33%)
Arginine (Arg, R)
n = 4 (1.16%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 27 | 10 | 23 | 10 | 11 | 18 | 3 | 13 | 11 | 1 | 5 | 1 | 1 | 1 | 9 | 6 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 0 | 4 | 16 | 11 | 0 | 0 | 7 | 10 | 2 | 6 | 5 | 7 | 0 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 12 | 20 | 0 | 6 | 9 | 6 | 0 | 0 | 6 | 3 | 5 | 2 | 1 | 5 | 9 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 5 | 5 | 0 | 0 | 1 | 7 | 1 | 0 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 64 | 83 | 129 | 69 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 40 | 108 | 55 | 142 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 14 | 104 | 144 | 83 | ||||||||||||
| ND4 (size: 1375 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 23 (5.03%)
Alanine (Ala, A)
n = 35 (7.66%)
Serine (Ser, S)
n = 39 (8.53%)
Threonine (Thr, T)
n = 42 (9.19%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 13 (2.84%)
Leucine (Leu, L)
n = 80 (17.51%)
Isoleucine (Ile, I)
n = 50 (10.94%)
Methionine (Met, M)
n = 30 (6.56%)
Proline (Pro, P)
n = 25 (5.47%)
Phenylalanine (Phe, F)
n = 14 (3.06%)
Tyrosine (Tyr, Y)
n = 16 (3.5%)
Tryptophan (Trp, W)
n = 18 (3.94%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 11 (2.41%)
Asparagine (Asn, N)
n = 15 (3.28%)
Glutamine (Gln, Q)
n = 8 (1.75%)
Histidine (His, H)
n = 11 (2.41%)
Lysine (Lys, K)
n = 9 (1.97%)
Arginine (Arg, R)
n = 11 (2.41%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 38 | 12 | 27 | 14 | 9 | 28 | 2 | 26 | 7 | 1 | 4 | 2 | 6 | 1 | 7 | 7 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 4 | 12 | 12 | 10 | 1 | 4 | 4 | 12 | 3 | 13 | 3 | 9 | 0 | 10 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 16 | 15 | 1 | 7 | 14 | 11 | 1 | 1 | 5 | 9 | 7 | 1 | 1 | 9 | 6 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 10 | 1 | 0 | 3 | 8 | 1 | 0 | 4 | 7 | 0 | 0 | 0 | 0 | 0 | 17 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 85 | 108 | 152 | 113 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 63 | 135 | 73 | 187 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 17 | 116 | 193 | 132 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 6 (6.12%)
Alanine (Ala, A)
n = 8 (8.16%)
Serine (Ser, S)
n = 11 (11.22%)
Threonine (Thr, T)
n = 9 (9.18%)
Cysteine (Cys, C)
n = 4 (4.08%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 25 (25.51%)
Isoleucine (Ile, I)
n = 3 (3.06%)
Methionine (Met, M)
n = 7 (7.14%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 4 (4.08%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 1 (1.02%)
Arginine (Arg, R)
n = 2 (2.04%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 1 | 2 | 5 | 5 | 7 | 7 | 0 | 6 | 2 | 0 | 1 | 0 | 0 | 0 | 3 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 2 | 2 | 0 | 5 | 3 | 0 | 1 | 2 | 2 | 1 | 0 | 1 | 0 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 3 | 2 | 0 | 2 | 5 | 3 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 2 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 2 | 1 | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 19 | 28 | 25 | 27 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 14 | 28 | 16 | 41 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 4 | 35 | 35 | 25 | ||||||||||||
| ND5 (size: 1842 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 30 (4.89%)
Alanine (Ala, A)
n = 48 (7.83%)
Serine (Ser, S)
n = 42 (6.85%)
Threonine (Thr, T)
n = 49 (7.99%)
Cysteine (Cys, C)
n = 8 (1.31%)
Valine (Val, V)
n = 20 (3.26%)
Leucine (Leu, L)
n = 105 (17.13%)
Isoleucine (Ile, I)
n = 65 (10.6%)
Methionine (Met, M)
n = 32 (5.22%)
Proline (Pro, P)
n = 27 (4.4%)
Phenylalanine (Phe, F)
n = 33 (5.38%)
Tyrosine (Tyr, Y)
n = 14 (2.28%)
Tryptophan (Trp, W)
n = 12 (1.96%)
Aspartic acid (Asp, D)
n = 11 (1.79%)
Glutamic acid (Glu, E)
n = 10 (1.63%)
Asparagine (Asn, N)
n = 34 (5.55%)
Glutamine (Gln, Q)
n = 24 (3.92%)
Histidine (His, H)
n = 15 (2.45%)
Lysine (Lys, K)
n = 24 (3.92%)
Arginine (Arg, R)
n = 10 (1.63%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 41 | 24 | 28 | 27 | 20 | 22 | 5 | 29 | 20 | 4 | 7 | 4 | 9 | 0 | 19 | 14 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 2 | 6 | 11 | 16 | 20 | 1 | 4 | 11 | 13 | 2 | 9 | 5 | 11 | 2 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 12 | 26 | 3 | 13 | 9 | 12 | 0 | 1 | 7 | 9 | 5 | 3 | 2 | 20 | 14 | 5 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 8 | 2 | 3 | 8 | 24 | 0 | 3 | 4 | 3 | 0 | 0 | 0 | 1 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 119 | 150 | 212 | 133 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 68 | 158 | 133 | 255 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 28 | 169 | 235 | 182 | ||||||||||||
| ND6 (size: 504 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 20 (11.98%)
Alanine (Ala, A)
n = 17 (10.18%)
Serine (Ser, S)
n = 9 (5.39%)
Threonine (Thr, T)
n = 2 (1.2%)
Cysteine (Cys, C)
n = 3 (1.8%)
Valine (Val, V)
n = 29 (17.37%)
Leucine (Leu, L)
n = 23 (13.77%)
Isoleucine (Ile, I)
n = 6 (3.59%)
Methionine (Met, M)
n = 11 (6.59%)
Proline (Pro, P)
n = 5 (2.99%)
Phenylalanine (Phe, F)
n = 11 (6.59%)
Tyrosine (Tyr, Y)
n = 10 (5.99%)
Tryptophan (Trp, W)
n = 4 (2.4%)
Aspartic acid (Asp, D)
n = 3 (1.8%)
Glutamic acid (Glu, E)
n = 5 (2.99%)
Asparagine (Asn, N)
n = 2 (1.2%)
Glutamine (Gln, Q)
n = 1 (0.6%)
Histidine (His, H)
n = 1 (0.6%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 5 (2.99%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 5 | 1 | 7 | 2 | 0 | 1 | 1 | 14 | 0 | 1 | 13 | 1 | 10 | 5 | 10 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 3 | 0 | 4 | 3 | 5 | 5 | 7 | 2 | 3 | 8 | 4 | 0 | 0 | 1 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 0 | 0 | 7 | 0 | 1 | 0 | 1 | 0 | 8 | 2 | 2 | 5 | 2 | 0 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 2 | 3 | 3 | 0 | 0 | 0 | 2 | 0 | 1 | 2 | 1 | 0 | 0 | 0 | 2 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 74 | 16 | 23 | 55 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 34 | 32 | 22 | 80 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 37 | 10 | 47 | 74 | ||||||||||||
| Total protein-coding genes (size: 11384 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 227 (5.99%)
Alanine (Ala, A)
n = 308 (8.13%)
Serine (Ser, S)
n = 255 (6.73%)
Threonine (Thr, T)
n = 300 (7.92%)
Cysteine (Cys, C)
n = 28 (0.74%)
Valine (Val, V)
n = 189 (4.99%)
Leucine (Leu, L)
n = 616 (16.25%)
Isoleucine (Ile, I)
n = 350 (9.23%)
Methionine (Met, M)
n = 198 (5.22%)
Proline (Pro, P)
n = 208 (5.49%)
Phenylalanine (Phe, F)
n = 216 (5.7%)
Tyrosine (Tyr, Y)
n = 117 (3.09%)
Tryptophan (Trp, W)
n = 116 (3.06%)
Aspartic acid (Asp, D)
n = 71 (1.87%)
Glutamic acid (Glu, E)
n = 95 (2.51%)
Asparagine (Asn, N)
n = 140 (3.69%)
Glutamine (Gln, Q)
n = 94 (2.48%)
Histidine (His, H)
n = 101 (2.66%)
Lysine (Lys, K)
n = 81 (2.14%)
Arginine (Arg, R)
n = 76 (2.01%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 244 | 106 | 162 | 129 | 97 | 176 | 30 | 169 | 83 | 11 | 67 | 32 | 75 | 15 | 124 | 92 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 36 | 9 | 19 | 59 | 123 | 118 | 8 | 35 | 68 | 88 | 36 | 60 | 45 | 97 | 6 | 69 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 91 | 130 | 10 | 60 | 69 | 86 | 1 | 5 | 34 | 70 | 47 | 13 | 15 | 71 | 69 | 36 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 65 | 85 | 10 | 31 | 40 | 77 | 4 | 11 | 21 | 39 | 5 | 1 | 1 | 3 | 0 | 103 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 890 | 911 | 1110 | 880 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 488 | 1032 | 702 | 1569 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 201 | 1018 | 1492 | 1080 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​o​l​y​p​t​e​r​u​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ s​e​n​e​g​a​l​u​s​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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