Viewing data for Saimiri boliviensis


Scientific name Saimiri boliviensis
Common name Bolivian squirrel monkey
Maximum lifespan 30.30 years (Saimiri boliviensis@AnAge)

Total mtDNA (size: 16473 bases) GC AT G C A T
Base content (bases) 6700 9773 4526 2174 4456 5317
Base content per 1 kb (bases) 407 593 275 132 271 323
Base content (%) 40.7% 59.3%
Total protein-coding genes (size: 11325 bases) GC AT G C A T
Base content (bases) 4593 6732 3287 1306 3159 3573
Base content per 1 kb (bases) 406 594 290 115 279 315
Base content (%) 40.6% 59.4%
D-loop (size: 1061 bases) GC AT G C A T
Base content (bases) 462 599 280 182 293 306
Base content per 1 kb (bases) 435 565 264 172 276 288
Base content (%) 43.5% 56.5%
Total tRNA-coding genes (size: 1504 bases) GC AT G C A T
Base content (bases) 561 943 329 232 403 540
Base content per 1 kb (bases) 373 627 219 154 268 359
Base content (%) 37.3% 62.7%
Total rRNA-coding genes (size: 2505 bases) GC AT G C A T
Base content (bases) 1047 1458 607 440 585 873
Base content per 1 kb (bases) 418 582 242 176 234 349
Base content (%) 41.8% 58.2%
12S rRNA gene (size: 954 bases) GC AT G C A T
Base content (bases) 422 532 238 184 209 323
Base content per 1 kb (bases) 442 558 249 193 219 339
Base content (%) 44.2% 55.8%
16S rRNA gene (size: 1551 bases) GC AT G C A T
Base content (bases) 625 926 369 256 376 550
Base content per 1 kb (bases) 403 597 238 165 242 355
Base content (%) 40.3% 59.7%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 266 415 207 59 198 217
Base content per 1 kb (bases) 391 609 304 87 291 319
Base content (%) 39.1% 60.9%
ATP8 (size: 201 bases) GC AT G C A T
Base content (bases) 66 135 53 13 53 82
Base content per 1 kb (bases) 328 672 264 65 264 408
Base content (%) 32.8% 67.2%
COX1 (size: 1542 bases) GC AT G C A T
Base content (bases) 650 892 398 252 470 422
Base content per 1 kb (bases) 422 578 258 163 305 274
Base content (%) 42.2% 57.8%
COX2 (size: 674 bases) GC AT G C A T
Base content (bases) 276 398 185 91 183 215
Base content per 1 kb (bases) 409 591 274 135 272 319
Base content (%) 40.9% 59.1%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 348 436 239 109 209 227
Base content per 1 kb (bases) 444 556 305 139 267 290
Base content (%) 44.4% 55.6%
CYTB (size: 1140 bases) GC AT G C A T
Base content (bases) 477 663 340 137 315 348
Base content per 1 kb (bases) 418 582 298 120 276 305
Base content (%) 41.8% 58.2%
ND1 (size: 955 bases) GC AT G C A T
Base content (bases) 394 561 290 104 268 293
Base content per 1 kb (bases) 413 587 304 109 281 307
Base content (%) 41.3% 58.7%
ND2 (size: 1039 bases) GC AT G C A T
Base content (bases) 392 647 312 80 274 373
Base content per 1 kb (bases) 377 623 300 77 264 359
Base content (%) 37.7% 62.3%
ND3 (size: 346 bases) GC AT G C A T
Base content (bases) 128 218 96 32 106 112
Base content per 1 kb (bases) 370 630 277 92 306 324
Base content (%) 37.0% 63.0%
ND4 (size: 1375 bases) GC AT G C A T
Base content (bases) 553 822 407 146 386 436
Base content per 1 kb (bases) 402 598 296 106 281 317
Base content (%) 40.2% 59.8%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 118 179 77 41 96 83
Base content per 1 kb (bases) 397 603 259 138 323 279
Base content (%) 39.7% 60.3%
ND5 (size: 1809 bases) GC AT G C A T
Base content (bases) 737 1072 540 197 498 574
Base content per 1 kb (bases) 407 593 299 109 275 317
Base content (%) 40.7% 59.3%
ND6 (size: 534 bases) GC AT G C A T
Base content (bases) 204 330 155 49 119 211
Base content per 1 kb (bases) 382 618 290 92 223 395
Base content (%) 38.2% 61.8%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.98%)
Alanine (Ala, A)
n = 13 (5.75%)
Serine (Ser, S)
n = 16 (7.08%)
Threonine (Thr, T)
n = 27 (11.95%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 11 (4.87%)
Leucine (Leu, L)
n = 48 (21.24%)
Isoleucine (Ile, I)
n = 26 (11.5%)
Methionine (Met, M)
n = 13 (5.75%)
Proline (Pro, P)
n = 12 (5.31%)
Phenylalanine (Phe, F)
n = 9 (3.98%)
Tyrosine (Tyr, Y)
n = 4 (1.77%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 2 (0.88%)
Asparagine (Asn, N)
n = 12 (5.31%)
Glutamine (Gln, Q)
n = 9 (3.98%)
Histidine (His, H)
n = 5 (2.21%)
Lysine (Lys, K)
n = 3 (1.33%)
Arginine (Arg, R)
n = 4 (1.77%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 11 11 9 8 24 1 6 8 1 0 5 6 0 6 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 4 1 8 0 2 1 5 1 1 7 4 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 10 0 5 5 4 0 1 1 0 4 0 0 4 8 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 2 0 0 0 3 0 0 0 3 1 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
35 72 83 37
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
18 66 36 107
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 69 98 54
ATP8 (size: 201 bases)
Amino acid sequence: MPQLDTSPWPMVILSMIVTLFYITQLKMLNFISYTNPLFKSIKTKEHKTTWKSKWPKTYSPSLMSQ*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 8 (12.12%)
Threonine (Thr, T)
n = 8 (12.12%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (3.03%)
Leucine (Leu, L)
n = 7 (10.61%)
Isoleucine (Ile, I)
n = 5 (7.58%)
Methionine (Met, M)
n = 5 (7.58%)
Proline (Pro, P)
n = 6 (9.09%)
Phenylalanine (Phe, F)
n = 3 (4.55%)
Tyrosine (Tyr, Y)
n = 3 (4.55%)
Tryptophan (Trp, W)
n = 3 (4.55%)
Aspartic acid (Asp, D)
n = 1 (1.52%)
Glutamic acid (Glu, E)
n = 1 (1.52%)
Asparagine (Asn, N)
n = 2 (3.03%)
Glutamine (Gln, Q)
n = 3 (4.55%)
Histidine (His, H)
n = 1 (1.52%)
Lysine (Lys, K)
n = 8 (12.12%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 3 2 0 1 4 0 2 2 1 0 0 1 1 1 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 0 0 0 0 0 0 0 0 1 1 4 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 2 0 1 2 5 0 0 0 2 1 0 0 2 0 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 0 0 1 8 0 0 0 0 0 0 0 0 1 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
4 15 28 20
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
3 22 20 22
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 16 34 11
COX1 (size: 1542 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 45 (8.77%)
Alanine (Ala, A)
n = 37 (7.21%)
Serine (Ser, S)
n = 37 (7.21%)
Threonine (Thr, T)
n = 35 (6.82%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 33 (6.43%)
Leucine (Leu, L)
n = 59 (11.5%)
Isoleucine (Ile, I)
n = 44 (8.58%)
Methionine (Met, M)
n = 31 (6.04%)
Proline (Pro, P)
n = 28 (5.46%)
Phenylalanine (Phe, F)
n = 43 (8.38%)
Tyrosine (Tyr, Y)
n = 20 (3.9%)
Tryptophan (Trp, W)
n = 16 (3.12%)
Aspartic acid (Asp, D)
n = 15 (2.92%)
Glutamic acid (Glu, E)
n = 10 (1.95%)
Asparagine (Asn, N)
n = 16 (3.12%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 18 (3.51%)
Lysine (Lys, K)
n = 10 (1.95%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
29 15 25 6 19 21 2 11 6 1 5 8 16 4 21 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 1 14 8 13 2 6 12 17 10 7 10 10 1 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 14 1 6 8 16 1 3 3 9 11 2 0 8 8 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 7 3 7 8 9 1 1 2 4 1 0 0 0 1 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
140 109 142 123
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 131 97 210
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
36 158 183 137
COX2 (size: 674 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.59%)
Alanine (Ala, A)
n = 15 (6.73%)
Serine (Ser, S)
n = 18 (8.07%)
Threonine (Thr, T)
n = 15 (6.73%)
Cysteine (Cys, C)
n = 2 (0.9%)
Valine (Val, V)
n = 8 (3.59%)
Leucine (Leu, L)
n = 29 (13.0%)
Isoleucine (Ile, I)
n = 23 (10.31%)
Methionine (Met, M)
n = 14 (6.28%)
Proline (Pro, P)
n = 12 (5.38%)
Phenylalanine (Phe, F)
n = 11 (4.93%)
Tyrosine (Tyr, Y)
n = 11 (4.93%)
Tryptophan (Trp, W)
n = 5 (2.24%)
Aspartic acid (Asp, D)
n = 10 (4.48%)
Glutamic acid (Glu, E)
n = 14 (6.28%)
Asparagine (Asn, N)
n = 5 (2.24%)
Glutamine (Gln, Q)
n = 7 (3.14%)
Histidine (His, H)
n = 7 (3.14%)
Lysine (Lys, K)
n = 4 (1.79%)
Arginine (Arg, R)
n = 6 (2.69%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 13 10 5 3 13 2 6 6 1 1 5 2 0 6 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 4 6 5 0 0 4 3 1 3 2 7 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 7 0 2 3 9 0 0 4 4 7 0 0 3 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 12 2 4 6 3 1 1 2 3 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
55 55 65 49
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 56 58 85
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 74 91 48
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 18 (6.92%)
Serine (Ser, S)
n = 17 (6.54%)
Threonine (Thr, T)
n = 27 (10.38%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 12 (4.62%)
Leucine (Leu, L)
n = 30 (11.54%)
Isoleucine (Ile, I)
n = 15 (5.77%)
Methionine (Met, M)
n = 12 (4.62%)
Proline (Pro, P)
n = 15 (5.77%)
Phenylalanine (Phe, F)
n = 22 (8.46%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 4 (1.54%)
Glutamine (Gln, Q)
n = 10 (3.85%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 4 (1.54%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 4 11 4 7 12 3 4 10 0 3 3 5 1 7 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 4 10 4 0 3 5 11 0 3 6 5 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 14 0 3 3 5 1 0 5 3 9 0 0 1 3 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 8 0 2 2 2 0 1 1 2 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
61 72 65 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 72 57 91
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 95 105 54
CYTB (size: 1140 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 23 (6.07%)
Alanine (Ala, A)
n = 21 (5.54%)
Serine (Ser, S)
n = 25 (6.6%)
Threonine (Thr, T)
n = 39 (10.29%)
Cysteine (Cys, C)
n = 2 (0.53%)
Valine (Val, V)
n = 12 (3.17%)
Leucine (Leu, L)
n = 59 (15.57%)
Isoleucine (Ile, I)
n = 39 (10.29%)
Methionine (Met, M)
n = 16 (4.22%)
Proline (Pro, P)
n = 23 (6.07%)
Phenylalanine (Phe, F)
n = 24 (6.33%)
Tyrosine (Tyr, Y)
n = 13 (3.43%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 9 (2.37%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 18 (4.75%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 19 12 11 15 23 1 8 7 1 3 2 6 1 11 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 1 12 7 1 5 8 9 1 6 4 12 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 21 3 5 7 10 0 2 1 5 8 2 1 3 15 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 5 1 1 8 10 0 0 2 5 1 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 101 125 83
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
48 105 77 150
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 134 146 82
ND1 (size: 955 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (3.47%)
Alanine (Ala, A)
n = 29 (9.15%)
Serine (Ser, S)
n = 22 (6.94%)
Threonine (Thr, T)
n = 35 (11.04%)
Cysteine (Cys, C)
n = 1 (0.32%)
Valine (Val, V)
n = 9 (2.84%)
Leucine (Leu, L)
n = 59 (18.61%)
Isoleucine (Ile, I)
n = 26 (8.2%)
Methionine (Met, M)
n = 16 (5.05%)
Proline (Pro, P)
n = 21 (6.62%)
Phenylalanine (Phe, F)
n = 16 (5.05%)
Tyrosine (Tyr, Y)
n = 12 (3.79%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.95%)
Glutamic acid (Glu, E)
n = 11 (3.47%)
Asparagine (Asn, N)
n = 13 (4.1%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 5 (1.58%)
Lysine (Lys, K)
n = 7 (2.21%)
Arginine (Arg, R)
n = 7 (2.21%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 15 14 14 5 31 0 8 6 0 2 3 3 1 6 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 0 4 15 10 0 2 6 2 1 6 7 6 2 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 18 0 3 6 10 0 0 3 5 7 1 1 5 8 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 10 1 2 1 6 1 1 2 4 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
63 89 100 66
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 104 57 126
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 97 136 75
ND2 (size: 1039 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.48%)
Alanine (Ala, A)
n = 17 (4.93%)
Serine (Ser, S)
n = 28 (8.12%)
Threonine (Thr, T)
n = 36 (10.43%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 6 (1.74%)
Leucine (Leu, L)
n = 61 (17.68%)
Isoleucine (Ile, I)
n = 30 (8.7%)
Methionine (Met, M)
n = 41 (11.88%)
Proline (Pro, P)
n = 24 (6.96%)
Phenylalanine (Phe, F)
n = 15 (4.35%)
Tyrosine (Tyr, Y)
n = 8 (2.32%)
Tryptophan (Trp, W)
n = 11 (3.19%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 20 (5.8%)
Glutamine (Gln, Q)
n = 10 (2.9%)
Histidine (His, H)
n = 8 (2.32%)
Lysine (Lys, K)
n = 11 (3.19%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 18 37 6 13 32 3 7 9 1 1 1 4 0 6 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 7 5 5 0 0 5 5 2 4 11 9 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 23 0 2 11 11 0 2 2 3 5 0 0 5 15 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 4 0 0 1 11 0 0 2 1 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
40 99 142 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 101 62 153
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 112 169 55
ND3 (size: 1039 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.48%)
Alanine (Ala, A)
n = 17 (4.93%)
Serine (Ser, S)
n = 28 (8.12%)
Threonine (Thr, T)
n = 36 (10.43%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 6 (1.74%)
Leucine (Leu, L)
n = 61 (17.68%)
Isoleucine (Ile, I)
n = 30 (8.7%)
Methionine (Met, M)
n = 41 (11.88%)
Proline (Pro, P)
n = 24 (6.96%)
Phenylalanine (Phe, F)
n = 15 (4.35%)
Tyrosine (Tyr, Y)
n = 8 (2.32%)
Tryptophan (Trp, W)
n = 11 (3.19%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 20 (5.8%)
Glutamine (Gln, Q)
n = 10 (2.9%)
Histidine (His, H)
n = 8 (2.32%)
Lysine (Lys, K)
n = 11 (3.19%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 18 37 6 13 32 3 7 9 1 1 1 4 0 6 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 7 5 5 0 0 5 5 2 4 11 9 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 23 0 2 11 11 0 2 2 3 5 0 0 5 15 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 4 0 0 1 11 0 0 2 1 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
40 99 142 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 101 62 153
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 112 169 55
ND4 (size: 1375 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.94%)
Alanine (Ala, A)
n = 23 (5.03%)
Serine (Ser, S)
n = 39 (8.53%)
Threonine (Thr, T)
n = 41 (8.97%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 11 (2.41%)
Leucine (Leu, L)
n = 92 (20.13%)
Isoleucine (Ile, I)
n = 37 (8.1%)
Methionine (Met, M)
n = 42 (9.19%)
Proline (Pro, P)
n = 27 (5.91%)
Phenylalanine (Phe, F)
n = 20 (4.38%)
Tyrosine (Tyr, Y)
n = 17 (3.72%)
Tryptophan (Trp, W)
n = 13 (2.84%)
Aspartic acid (Asp, D)
n = 4 (0.88%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 20 (4.38%)
Glutamine (Gln, Q)
n = 7 (1.53%)
Histidine (His, H)
n = 12 (2.63%)
Lysine (Lys, K)
n = 13 (2.84%)
Arginine (Arg, R)
n = 10 (2.19%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 20 36 14 20 43 2 10 4 3 1 5 4 1 9 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 2 6 8 9 0 2 8 5 3 2 12 12 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 20 2 5 13 10 1 1 9 6 11 3 3 11 9 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 8 1 1 3 12 1 0 2 8 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
65 135 163 95
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 120 82 202
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 152 191 88
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 7 (7.14%)
Serine (Ser, S)
n = 7 (7.14%)
Threonine (Thr, T)
n = 4 (4.08%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 7 (7.14%)
Leucine (Leu, L)
n = 27 (27.55%)
Isoleucine (Ile, I)
n = 5 (5.1%)
Methionine (Met, M)
n = 10 (10.2%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 3 (3.06%)
Tyrosine (Tyr, Y)
n = 6 (6.12%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 5 (5.1%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 2 (2.04%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 4 8 2 2 13 3 4 2 0 1 1 2 3 0 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 3 0 1 3 3 0 0 4 0 0 1 1 0 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 2 0 2 2 3 0 0 0 3 3 0 3 2 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 1 1 1 0 0 0 0 0 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
21 27 24 27
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
8 20 19 52
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 30 40 17
ND5 (size: 1809 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (4.49%)
Alanine (Ala, A)
n = 43 (7.14%)
Serine (Ser, S)
n = 59 (9.8%)
Threonine (Thr, T)
n = 66 (10.96%)
Cysteine (Cys, C)
n = 5 (0.83%)
Valine (Val, V)
n = 15 (2.49%)
Leucine (Leu, L)
n = 95 (15.78%)
Isoleucine (Ile, I)
n = 53 (8.8%)
Methionine (Met, M)
n = 37 (6.15%)
Proline (Pro, P)
n = 26 (4.32%)
Phenylalanine (Phe, F)
n = 37 (6.15%)
Tyrosine (Tyr, Y)
n = 21 (3.49%)
Tryptophan (Trp, W)
n = 12 (1.99%)
Aspartic acid (Asp, D)
n = 9 (1.5%)
Glutamic acid (Glu, E)
n = 10 (1.66%)
Asparagine (Asn, N)
n = 30 (4.98%)
Glutamine (Gln, Q)
n = 18 (2.99%)
Histidine (His, H)
n = 10 (1.66%)
Lysine (Lys, K)
n = 21 (3.49%)
Arginine (Arg, R)
n = 8 (1.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 34 32 19 17 43 3 13 18 0 3 4 7 1 15 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 4 7 19 16 1 3 9 11 4 7 8 10 1 17
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
27 20 2 10 12 18 1 6 12 4 17 2 0 11 19 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 10 0 4 5 18 3 1 5 2 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
104 144 225 130
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
70 176 120 237
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 220 229 131
ND6 (size: 534 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (14.69%)
Alanine (Ala, A)
n = 11 (6.21%)
Serine (Ser, S)
n = 10 (5.65%)
Threonine (Thr, T)
n = 11 (6.21%)
Cysteine (Cys, C)
n = 3 (1.69%)
Valine (Val, V)
n = 19 (10.73%)
Leucine (Leu, L)
n = 18 (10.17%)
Isoleucine (Ile, I)
n = 10 (5.65%)
Methionine (Met, M)
n = 18 (10.17%)
Proline (Pro, P)
n = 5 (2.82%)
Phenylalanine (Phe, F)
n = 9 (5.08%)
Tyrosine (Tyr, Y)
n = 10 (5.65%)
Tryptophan (Trp, W)
n = 4 (2.26%)
Aspartic acid (Asp, D)
n = 4 (2.26%)
Glutamic acid (Glu, E)
n = 8 (4.52%)
Asparagine (Asn, N)
n = 2 (1.13%)
Glutamine (Gln, Q)
n = 1 (0.56%)
Histidine (His, H)
n = 3 (1.69%)
Lysine (Lys, K)
n = 3 (1.69%)
Arginine (Arg, R)
n = 2 (1.13%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 0 7 2 0 1 0 8 1 0 10 0 5 4 9 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
11 3 0 6 0 1 4 15 0 5 6 3 0 1 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 3 2 3 0 2 1 4 0 8 2 1 7 2 0 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 6 4 0 0 3 1 0 0 1 0 0 0 1 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 14 48 48
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 33 32 74
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
48 2 39 89
Total protein-coding genes (size: 11377 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 205 (5.41%)
Alanine (Ala, A)
n = 239 (6.31%)
Serine (Ser, S)
n = 291 (7.68%)
Threonine (Thr, T)
n = 356 (9.4%)
Cysteine (Cys, C)
n = 22 (0.58%)
Valine (Val, V)
n = 147 (3.88%)
Leucine (Leu, L)
n = 612 (16.15%)
Isoleucine (Ile, I)
n = 326 (8.6%)
Methionine (Met, M)
n = 258 (6.81%)
Proline (Pro, P)
n = 207 (5.46%)
Phenylalanine (Phe, F)
n = 220 (5.81%)
Tyrosine (Tyr, Y)
n = 142 (3.75%)
Tryptophan (Trp, W)
n = 104 (2.74%)
Aspartic acid (Asp, D)
n = 64 (1.69%)
Glutamic acid (Glu, E)
n = 90 (2.38%)
Asparagine (Asn, N)
n = 152 (4.01%)
Glutamine (Gln, Q)
n = 92 (2.43%)
Histidine (His, H)
n = 101 (2.67%)
Lysine (Lys, K)
n = 94 (2.48%)
Arginine (Arg, R)
n = 61 (1.61%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
168 158 208 93 113 277 23 91 82 10 30 38 62 17 100 120
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
50 10 12 58 90 83 8 38 64 74 29 45 73 81 8 76
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
110 160 10 48 73 104 5 20 41 54 88 11 15 61 91 34
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
67 75 15 26 38 84 10 6 18 33 4 0 0 4 3 93
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
745 967 1247 831
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
453 1032 742 1563
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
218 1194 1511 867 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​S​a​i​m​i​r​i​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ b​o​l​i​v​i​e​n​s​i​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.