Viewing data for Tachycineta thalassina


Scientific name Tachycineta thalassina
Common name Violet-green swallow
Maximum lifespan 9.10 years (Tachycineta thalassina@AnAge)

Total mtDNA (size: 18118 bases) GC AT G C A T
Base content (bases) 8372 9746 5783 2589 4253 5493
Base content per 1 kb (bases) 462 538 319 143 235 303
Base content (%) 46.2% 53.8%
Total protein-coding genes (size: 11379 bases) GC AT G C A T
Base content (bases) 5382 5997 3937 1445 2617 3380
Base content per 1 kb (bases) 473 527 346 127 230 297
Base content (%) 47.3% 52.7%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1537 bases) GC AT G C A T
Base content (bases) 665 872 393 272 371 501
Base content per 1 kb (bases) 433 567 256 177 241 326
Base content (%) 43.3% 56.7%
Total rRNA-coding genes (size: 2578 bases) GC AT G C A T
Base content (bases) 1208 1370 670 538 516 854
Base content per 1 kb (bases) 469 531 260 209 200 331
Base content (%) 46.9% 53.1%
12S rRNA gene (size: 973 bases) GC AT G C A T
Base content (bases) 472 501 254 218 200 301
Base content per 1 kb (bases) 485 515 261 224 206 309
Base content (%) 48.5% 51.5%
16S rRNA gene (size: 1605 bases) GC AT G C A T
Base content (bases) 736 869 416 320 316 553
Base content per 1 kb (bases) 459 541 259 199 197 345
Base content (%) 45.9% 54.1%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 311 373 238 73 163 210
Base content per 1 kb (bases) 455 545 348 107 238 307
Base content (%) 45.5% 54.5%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 77 91 65 12 41 50
Base content per 1 kb (bases) 458 542 387 71 244 298
Base content (%) 45.8% 54.2%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 750 801 491 259 373 428
Base content per 1 kb (bases) 484 516 317 167 240 276
Base content (%) 48.4% 51.6%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 326 358 224 102 145 213
Base content per 1 kb (bases) 477 523 327 149 212 311
Base content (%) 47.7% 52.3%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 388 396 262 126 189 207
Base content per 1 kb (bases) 495 505 334 161 241 264
Base content (%) 49.5% 50.5%
CYTB (size: 1143 bases) GC AT G C A T
Base content (bases) 551 592 401 150 277 315
Base content per 1 kb (bases) 482 518 351 131 242 276
Base content (%) 48.2% 51.8%
ND1 (size: 978 bases) GC AT G C A T
Base content (bases) 464 514 327 137 245 269
Base content per 1 kb (bases) 474 526 334 140 251 275
Base content (%) 47.4% 52.6%
ND2 (size: 1041 bases) GC AT G C A T
Base content (bases) 461 580 361 100 260 320
Base content per 1 kb (bases) 443 557 347 96 250 307
Base content (%) 44.3% 55.7%
ND3 (size: 351 bases) GC AT G C A T
Base content (bases) 166 185 121 45 86 99
Base content per 1 kb (bases) 473 527 345 128 245 282
Base content (%) 47.3% 52.7%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 650 728 497 153 309 419
Base content per 1 kb (bases) 472 528 361 111 224 304
Base content (%) 47.2% 52.8%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 140 157 105 35 74 83
Base content per 1 kb (bases) 471 529 354 118 249 279
Base content (%) 47.1% 52.9%
ND5 (size: 1818 bases) GC AT G C A T
Base content (bases) 846 972 639 207 404 568
Base content per 1 kb (bases) 465 535 351 114 222 312
Base content (%) 46.5% 53.5%
ND6 (size: 519 bases) GC AT G C A T
Base content (bases) 257 262 209 48 55 207
Base content per 1 kb (bases) 495 505 403 92 106 399
Base content (%) 49.5% 50.5%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 16 (7.05%)
Serine (Ser, S)
n = 16 (7.05%)
Threonine (Thr, T)
n = 24 (10.57%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (3.96%)
Leucine (Leu, L)
n = 61 (26.87%)
Isoleucine (Ile, I)
n = 18 (7.93%)
Methionine (Met, M)
n = 7 (3.08%)
Proline (Pro, P)
n = 15 (6.61%)
Phenylalanine (Phe, F)
n = 10 (4.41%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 3 (1.32%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 9 (3.96%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 12 6 4 12 35 4 6 8 1 0 4 3 2 0 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 4 6 6 0 1 1 5 1 1 6 7 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 11 0 0 5 6 0 2 3 1 2 1 0 1 7 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 4 0 0 3 4 0 0 1 4 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
40 87 66 35
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
22 66 35 105
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 85 109 23
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPTPWFFIMLISWLTFSLLIQPKILTFLSTNPPSSKALTTPTTPSWTWPWT*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.82%)
Serine (Ser, S)
n = 6 (10.91%)
Threonine (Thr, T)
n = 10 (18.18%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 8 (14.55%)
Isoleucine (Ile, I)
n = 4 (7.27%)
Methionine (Met, M)
n = 2 (3.64%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 2 (3.64%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 4 0 0 2 4 2 0 2 0 0 0 0 0 2 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 0 1 0 0 0 0 0 3 1 5 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 2 0 2 2 0 1 0 1 0 0 0 0 0 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1 19 21 15
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 25 7 18
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 21 22 8
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 47 (9.11%)
Serine (Ser, S)
n = 29 (5.62%)
Threonine (Thr, T)
n = 37 (7.17%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 35 (6.78%)
Leucine (Leu, L)
n = 61 (11.82%)
Isoleucine (Ile, I)
n = 42 (8.14%)
Methionine (Met, M)
n = 24 (4.65%)
Proline (Pro, P)
n = 30 (5.81%)
Phenylalanine (Phe, F)
n = 44 (8.53%)
Tyrosine (Tyr, Y)
n = 17 (3.29%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 14 (2.71%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 9 (1.74%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 36 16 3 14 29 8 5 9 0 3 8 20 4 11 33
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 0 1 6 24 16 1 2 17 25 3 6 8 16 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 13 0 3 11 11 0 0 4 0 17 0 2 3 12 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 11 0 3 11 9 0 1 2 5 0 0 1 0 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
154 120 132 111
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 139 94 206
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 232 202 56
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 18 (7.93%)
Serine (Ser, S)
n = 18 (7.93%)
Threonine (Thr, T)
n = 19 (8.37%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 18 (7.93%)
Leucine (Leu, L)
n = 30 (13.22%)
Isoleucine (Ile, I)
n = 12 (5.29%)
Methionine (Met, M)
n = 11 (4.85%)
Proline (Pro, P)
n = 12 (5.29%)
Phenylalanine (Phe, F)
n = 8 (3.52%)
Tyrosine (Tyr, Y)
n = 8 (3.52%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 10 (4.41%)
Glutamic acid (Glu, E)
n = 10 (4.41%)
Asparagine (Asn, N)
n = 12 (5.29%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 8 (3.52%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 7 8 3 3 17 4 3 6 1 0 10 7 1 0 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 3 3 10 4 1 1 3 3 1 3 3 6 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 9 0 3 5 6 1 0 3 0 8 0 0 2 10 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 10 0 0 10 4 0 0 2 3 1 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 60 61 43
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 64 60 79
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 100 92 23
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 22 (8.46%)
Serine (Ser, S)
n = 17 (6.54%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 18 (6.92%)
Leucine (Leu, L)
n = 32 (12.31%)
Isoleucine (Ile, I)
n = 13 (5.0%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 14 (5.38%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 6 (2.31%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 3 (1.15%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 4 (1.54%)
Arginine (Arg, R)
n = 6 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 11 4 1 8 19 1 3 5 2 3 6 8 1 4 19
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 3 11 6 2 4 9 5 1 0 5 9 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 10 0 2 7 4 0 1 3 1 10 0 0 0 3 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 6 1 3 3 4 0 0 2 4 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 72 54 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 71 54 94
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 119 99 31
CYTB (size: 1143 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.32%)
Alanine (Ala, A)
n = 30 (7.89%)
Serine (Ser, S)
n = 26 (6.84%)
Threonine (Thr, T)
n = 23 (6.05%)
Cysteine (Cys, C)
n = 4 (1.05%)
Valine (Val, V)
n = 19 (5.0%)
Leucine (Leu, L)
n = 66 (17.37%)
Isoleucine (Ile, I)
n = 33 (8.68%)
Methionine (Met, M)
n = 7 (1.84%)
Proline (Pro, P)
n = 25 (6.58%)
Phenylalanine (Phe, F)
n = 28 (7.37%)
Tyrosine (Tyr, Y)
n = 12 (3.16%)
Tryptophan (Trp, W)
n = 11 (2.89%)
Aspartic acid (Asp, D)
n = 9 (2.37%)
Glutamic acid (Glu, E)
n = 7 (1.84%)
Asparagine (Asn, N)
n = 19 (5.0%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 11 (2.89%)
Lysine (Lys, K)
n = 10 (2.63%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 29 5 7 14 37 7 1 7 1 5 8 6 0 4 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 3 2 19 9 0 3 7 14 0 5 8 11 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 11 0 1 13 11 0 0 1 0 12 0 0 3 16 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 6 1 1 8 10 0 1 1 5 1 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
89 117 93 82
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
48 103 77 153
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 181 145 42
ND1 (size: 978 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.31%)
Alanine (Ala, A)
n = 33 (10.15%)
Serine (Ser, S)
n = 24 (7.38%)
Threonine (Thr, T)
n = 20 (6.15%)
Cysteine (Cys, C)
n = 4 (1.23%)
Valine (Val, V)
n = 14 (4.31%)
Leucine (Leu, L)
n = 63 (19.38%)
Isoleucine (Ile, I)
n = 27 (8.31%)
Methionine (Met, M)
n = 12 (3.69%)
Proline (Pro, P)
n = 25 (7.69%)
Phenylalanine (Phe, F)
n = 18 (5.54%)
Tyrosine (Tyr, Y)
n = 13 (4.0%)
Tryptophan (Trp, W)
n = 8 (2.46%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.38%)
Asparagine (Asn, N)
n = 11 (3.38%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 3 (0.92%)
Lysine (Lys, K)
n = 7 (2.15%)
Arginine (Arg, R)
n = 8 (2.46%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 20 10 8 9 33 5 7 4 2 2 3 7 2 3 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 4 4 16 12 1 1 5 6 2 5 12 8 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 9 0 2 9 7 1 0 5 4 9 1 1 2 9 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 7 4 0 4 7 0 1 1 6 0 1 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 97 83 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 97 55 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 133 131 41
ND2 (size: 1041 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.76%)
Alanine (Ala, A)
n = 28 (8.09%)
Serine (Ser, S)
n = 29 (8.38%)
Threonine (Thr, T)
n = 43 (12.43%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 8 (2.31%)
Leucine (Leu, L)
n = 63 (18.21%)
Isoleucine (Ile, I)
n = 27 (7.8%)
Methionine (Met, M)
n = 19 (5.49%)
Proline (Pro, P)
n = 22 (6.36%)
Phenylalanine (Phe, F)
n = 17 (4.91%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 14 (4.05%)
Glutamine (Gln, Q)
n = 11 (3.18%)
Histidine (His, H)
n = 12 (3.47%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 16 17 8 11 30 5 9 11 0 3 2 2 1 1 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 4 13 11 0 1 4 6 2 7 9 5 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
24 12 0 1 18 6 0 1 3 2 5 0 0 3 11 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 3 1 1 0 12 1 0 0 2 1 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
54 102 120 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 118 63 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 141 137 55
ND3 (size: 1041 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.76%)
Alanine (Ala, A)
n = 28 (8.09%)
Serine (Ser, S)
n = 29 (8.38%)
Threonine (Thr, T)
n = 43 (12.43%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 8 (2.31%)
Leucine (Leu, L)
n = 63 (18.21%)
Isoleucine (Ile, I)
n = 27 (7.8%)
Methionine (Met, M)
n = 19 (5.49%)
Proline (Pro, P)
n = 22 (6.36%)
Phenylalanine (Phe, F)
n = 17 (4.91%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 14 (4.05%)
Glutamine (Gln, Q)
n = 11 (3.18%)
Histidine (His, H)
n = 12 (3.47%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 16 17 8 11 30 5 9 11 0 3 2 2 1 1 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 4 13 11 0 1 4 6 2 7 9 5 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
24 12 0 1 18 6 0 1 3 2 5 0 0 3 11 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 3 1 1 0 12 1 0 0 2 1 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
54 102 120 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 118 63 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 141 137 55
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.93%)
Alanine (Ala, A)
n = 41 (8.95%)
Serine (Ser, S)
n = 40 (8.73%)
Threonine (Thr, T)
n = 40 (8.73%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 9 (1.97%)
Leucine (Leu, L)
n = 93 (20.31%)
Isoleucine (Ile, I)
n = 41 (8.95%)
Methionine (Met, M)
n = 31 (6.77%)
Proline (Pro, P)
n = 29 (6.33%)
Phenylalanine (Phe, F)
n = 13 (2.84%)
Tyrosine (Tyr, Y)
n = 14 (3.06%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 10 (2.18%)
Asparagine (Asn, N)
n = 14 (3.06%)
Glutamine (Gln, Q)
n = 14 (3.06%)
Histidine (His, H)
n = 14 (3.06%)
Lysine (Lys, K)
n = 9 (1.97%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 34 26 7 27 47 7 5 12 2 1 4 4 0 0 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 2 4 19 17 1 1 8 9 0 4 18 7 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 18 0 4 10 17 0 3 6 2 12 1 0 1 13 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 8 2 0 3 8 1 1 2 8 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 156 144 78
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 141 78 187
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 200 197 43
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 9 (9.18%)
Serine (Ser, S)
n = 12 (12.24%)
Threonine (Thr, T)
n = 11 (11.22%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 21 (21.43%)
Isoleucine (Ile, I)
n = 3 (3.06%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 2 (2.04%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 6 (6.12%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 3 5 3 2 11 1 4 3 0 0 1 1 0 3 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 2 0 5 4 0 0 2 2 0 0 2 1 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 3 0 2 3 3 0 1 3 0 2 0 0 0 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 1 1 1 0 0 0 0 2 0 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
18 31 26 24
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 31 17 37
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 43 40 13
ND5 (size: 1818 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 33 (5.45%)
Alanine (Ala, A)
n = 49 (8.1%)
Serine (Ser, S)
n = 49 (8.1%)
Threonine (Thr, T)
n = 71 (11.74%)
Cysteine (Cys, C)
n = 6 (0.99%)
Valine (Val, V)
n = 18 (2.98%)
Leucine (Leu, L)
n = 109 (18.02%)
Isoleucine (Ile, I)
n = 52 (8.6%)
Methionine (Met, M)
n = 26 (4.3%)
Proline (Pro, P)
n = 30 (4.96%)
Phenylalanine (Phe, F)
n = 31 (5.12%)
Tyrosine (Tyr, Y)
n = 15 (2.48%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 8 (1.32%)
Glutamic acid (Glu, E)
n = 11 (1.82%)
Asparagine (Asn, N)
n = 25 (4.13%)
Glutamine (Gln, Q)
n = 18 (2.98%)
Histidine (His, H)
n = 13 (2.15%)
Lysine (Lys, K)
n = 20 (3.31%)
Arginine (Arg, R)
n = 9 (1.49%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 35 23 10 26 68 3 2 17 1 1 6 8 3 2 29
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 4 3 33 13 0 1 9 19 4 4 7 19 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
37 25 1 5 24 9 1 0 10 2 13 1 0 4 21 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 11 0 0 8 20 0 0 2 7 0 1 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
119 177 205 105
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
71 189 110 236
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 273 253 63
ND6 (size: 519 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 32 (18.6%)
Alanine (Ala, A)
n = 9 (5.23%)
Serine (Ser, S)
n = 17 (9.88%)
Threonine (Thr, T)
n = 2 (1.16%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 34 (19.77%)
Leucine (Leu, L)
n = 28 (16.28%)
Isoleucine (Ile, I)
n = 3 (1.74%)
Methionine (Met, M)
n = 4 (2.33%)
Proline (Pro, P)
n = 4 (2.33%)
Phenylalanine (Phe, F)
n = 10 (5.81%)
Tyrosine (Tyr, Y)
n = 7 (4.07%)
Tryptophan (Trp, W)
n = 5 (2.91%)
Aspartic acid (Asp, D)
n = 4 (2.33%)
Glutamic acid (Glu, E)
n = 3 (1.74%)
Asparagine (Asn, N)
n = 3 (1.74%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 4 (2.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 0 0 2 0 0 2 6 0 0 19 2 2 11 8 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 2 0 0 1 2 6 5 0 5 22 3 1 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 1 7 0 3 3 3 1 7 0 4 18 3 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 3 3 1 0 1 0 0 0 4 0 0 0 1 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
82 12 17 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
47 28 19 79
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
80 8 19 66
Total protein-coding genes (size: 11396 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 225 (5.93%)
Alanine (Ala, A)
n = 311 (8.19%)
Serine (Ser, S)
n = 290 (7.64%)
Threonine (Thr, T)
n = 332 (8.74%)
Cysteine (Cys, C)
n = 30 (0.79%)
Valine (Val, V)
n = 186 (4.9%)
Leucine (Leu, L)
n = 662 (17.43%)
Isoleucine (Ile, I)
n = 285 (7.51%)
Methionine (Met, M)
n = 162 (4.27%)
Proline (Pro, P)
n = 225 (5.93%)
Phenylalanine (Phe, F)
n = 219 (5.77%)
Tyrosine (Tyr, Y)
n = 111 (2.92%)
Tryptophan (Trp, W)
n = 107 (2.82%)
Aspartic acid (Asp, D)
n = 66 (1.74%)
Glutamic acid (Glu, E)
n = 86 (2.26%)
Asparagine (Asn, N)
n = 131 (3.45%)
Glutamine (Gln, Q)
n = 98 (2.58%)
Histidine (His, H)
n = 105 (2.77%)
Lysine (Lys, K)
n = 84 (2.21%)
Arginine (Arg, R)
n = 72 (1.9%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
68 217 125 59 136 340 53 52 88 10 37 54 70 25 41 178
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
37 9 21 34 159 106 12 20 68 101 36 41 85 96 3 42
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
163 125 2 32 110 86 7 11 44 19 92 10 22 22 109 22
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
83 73 13 12 54 81 3 4 15 46 7 2 1 7 1 97
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
874 1088 1052 784
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
492 1103 689 1514
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
242 1588 1495 473 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​T​a​c​h​y​c​i​n​e​t​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ t​h​a​l​a​s​s​i​n​a​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.