Viewing data for Morone saxatilis


Scientific name Morone saxatilis
Common name Striped bass
Maximum lifespan 30.00 years (Morone saxatilis@AnAge)

Total mtDNA (size: 17580 bases) GC AT G C A T
Base content (bases) 7892 9688 4972 2920 4797 4891
Base content per 1 kb (bases) 449 551 283 166 273 278
Base content (%) 44.9% 55.1%
Total protein-coding genes (size: 11410 bases) GC AT G C A T
Base content (bases) 5230 6180 3468 1762 3257 2923
Base content per 1 kb (bases) 458 542 304 154 285 256
Base content (%) 45.8% 54.2%
D-loop (size: 1984 bases) GC AT G C A T
Base content (bases) 796 1188 518 278 515 673
Base content per 1 kb (bases) 401 599 261 140 260 339
Base content (%) 40.1% 59.9%
Total tRNA-coding genes (size: 1613 bases) GC AT G C A T
Base content (bases) 704 909 386 318 414 495
Base content per 1 kb (bases) 436 564 239 197 257 307
Base content (%) 43.6% 56.4%
Total rRNA-coding genes (size: 2592 bases) GC AT G C A T
Base content (bases) 1205 1387 650 555 582 805
Base content per 1 kb (bases) 465 535 251 214 225 311
Base content (%) 46.5% 53.5%
12S rRNA gene (size: 941 bases) GC AT G C A T
Base content (bases) 456 485 242 214 208 277
Base content per 1 kb (bases) 485 515 257 227 221 294
Base content (%) 48.5% 51.5%
16S rRNA gene (size: 1651 bases) GC AT G C A T
Base content (bases) 749 902 408 341 374 528
Base content per 1 kb (bases) 454 546 247 207 227 320
Base content (%) 45.4% 54.6%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 323 361 224 99 214 147
Base content per 1 kb (bases) 472 528 327 145 313 215
Base content (%) 47.2% 52.8%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 74 94 51 23 48 46
Base content per 1 kb (bases) 440 560 304 137 286 274
Base content (%) 44.0% 56.0%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 709 842 419 290 477 365
Base content per 1 kb (bases) 457 543 270 187 308 235
Base content (%) 45.7% 54.3%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 306 385 182 124 190 195
Base content per 1 kb (bases) 443 557 263 179 275 282
Base content (%) 44.3% 55.7%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 358 427 224 134 229 198
Base content per 1 kb (bases) 456 544 285 171 292 252
Base content (%) 45.6% 54.4%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 497 644 322 175 360 284
Base content per 1 kb (bases) 436 564 282 153 316 249
Base content (%) 43.6% 56.4%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 456 519 309 147 278 241
Base content per 1 kb (bases) 468 532 317 151 285 247
Base content (%) 46.8% 53.2%
ND2 (size: 1045 bases) GC AT G C A T
Base content (bases) 485 560 360 125 284 276
Base content per 1 kb (bases) 464 536 344 120 272 264
Base content (%) 46.4% 53.6%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 181 168 124 57 100 68
Base content per 1 kb (bases) 519 481 355 163 287 195
Base content (%) 51.9% 48.1%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 623 758 424 199 393 365
Base content per 1 kb (bases) 451 549 307 144 285 264
Base content (%) 45.1% 54.9%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 146 151 96 50 89 62
Base content per 1 kb (bases) 492 508 323 168 300 209
Base content (%) 49.2% 50.8%
ND5 (size: 1842 bases) GC AT G C A T
Base content (bases) 827 1015 561 266 515 500
Base content per 1 kb (bases) 449 551 305 144 280 271
Base content (%) 44.9% 55.1%
ND6 (size: 519 bases) GC AT G C A T
Base content (bases) 250 269 174 76 86 183
Base content per 1 kb (bases) 482 518 335 146 166 353
Base content (%) 48.2% 51.8%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 18 (7.93%)
Serine (Ser, S)
n = 11 (4.85%)
Threonine (Thr, T)
n = 21 (9.25%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 15 (6.61%)
Leucine (Leu, L)
n = 63 (27.75%)
Isoleucine (Ile, I)
n = 17 (7.49%)
Methionine (Met, M)
n = 5 (2.2%)
Proline (Pro, P)
n = 15 (6.61%)
Phenylalanine (Phe, F)
n = 11 (4.85%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 10 (4.41%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 4 2 22 14 9 7 9 8 2 6 4 5 0 6 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 5 7 4 2 0 7 3 1 4 8 2 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 9 1 2 4 1 0 0 4 1 2 3 2 1 7 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 2 1 0 1 0 0 2 2 1 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
49 85 56 38
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 61 31 111
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 78 60 65
ATP8 (size: 168 bases)
Amino acid sequence: MPQLYPNPWFTILIYAWLVLLAIVPLKILSYVYPNHNYLRGLEKPEGHSWFWPWF*
Amino acid frequencies:
Glycine (Gly, G)
n = 2 (3.64%)
Alanine (Ala, A)
n = 2 (3.64%)
Serine (Ser, S)
n = 2 (3.64%)
Threonine (Thr, T)
n = 1 (1.82%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 3 (5.45%)
Leucine (Leu, L)
n = 9 (16.36%)
Isoleucine (Ile, I)
n = 4 (7.27%)
Methionine (Met, M)
n = 1 (1.82%)
Proline (Pro, P)
n = 7 (12.73%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 5 (9.09%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 2 (3.64%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 1 (1.82%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 1 (1.82%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 1 0 0 2 3 2 2 1 0 3 0 0 0 1 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 2 0 0 0 1 1 0 1 2 2 2 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 0 1 1 0 0 0 0 0 5 1 0 0 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 0 0 0 2 0 0 0 1 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
9 18 11 18
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
8 12 16 20
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 21 19 10
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.91%)
Alanine (Ala, A)
n = 47 (9.11%)
Serine (Ser, S)
n = 31 (6.01%)
Threonine (Thr, T)
n = 37 (7.17%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 41 (7.95%)
Leucine (Leu, L)
n = 62 (12.02%)
Isoleucine (Ile, I)
n = 40 (7.75%)
Methionine (Met, M)
n = 25 (4.84%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 40 (7.75%)
Tyrosine (Tyr, Y)
n = 19 (3.68%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 14 (2.71%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
25 15 12 21 12 16 2 8 4 4 11 9 15 6 23 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
13 0 1 7 16 20 4 7 16 12 11 11 9 6 2 14
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 11 0 9 11 4 1 1 5 4 15 2 3 6 8 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 7 3 7 8 6 2 3 1 4 0 0 0 1 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
159 114 130 114
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 137 94 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
53 168 141 155
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 18 (7.86%)
Serine (Ser, S)
n = 15 (6.55%)
Threonine (Thr, T)
n = 10 (4.37%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 20 (8.73%)
Leucine (Leu, L)
n = 31 (13.54%)
Isoleucine (Ile, I)
n = 16 (6.99%)
Methionine (Met, M)
n = 12 (5.24%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 10 (4.37%)
Tyrosine (Tyr, Y)
n = 8 (3.49%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 14 (6.11%)
Asparagine (Asn, N)
n = 4 (1.75%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 5 (2.18%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 6 9 5 4 13 2 5 5 3 5 7 5 3 6 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 1 5 6 6 1 3 2 1 3 2 6 6 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 6 0 1 3 8 0 0 3 4 4 1 2 2 2 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 8 6 6 7 4 1 2 1 3 0 0 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 62 50 44
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 54 62 89
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 66 83 56
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 21 (8.08%)
Serine (Ser, S)
n = 14 (5.38%)
Threonine (Thr, T)
n = 24 (9.23%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 31 (11.92%)
Isoleucine (Ile, I)
n = 16 (6.15%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 26 (10.0%)
Tyrosine (Tyr, Y)
n = 10 (3.85%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.85%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 5 7 8 6 4 4 8 9 0 3 6 7 0 15 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 1 5 8 7 1 2 11 5 3 2 6 2 2 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 13 0 0 5 6 0 1 2 0 10 3 1 1 0 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 8 2 1 4 2 0 1 0 3 1 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 64 54 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 68 53 97
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 92 90 61
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 31 (8.18%)
Serine (Ser, S)
n = 22 (5.8%)
Threonine (Thr, T)
n = 21 (5.54%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 27 (7.12%)
Leucine (Leu, L)
n = 65 (17.15%)
Isoleucine (Ile, I)
n = 28 (7.39%)
Methionine (Met, M)
n = 8 (2.11%)
Proline (Pro, P)
n = 22 (5.8%)
Phenylalanine (Phe, F)
n = 30 (7.92%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 7 (1.85%)
Asparagine (Asn, N)
n = 18 (4.75%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 9 6 15 16 17 0 15 4 2 8 6 12 1 6 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 1 8 13 10 0 4 11 6 5 5 8 5 4 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 9 4 6 7 8 0 1 0 8 6 1 2 6 12 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 6 1 9 2 8 1 2 1 5 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
102 96 85 97
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
50 95 77 158
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 131 122 104
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (5.86%)
Alanine (Ala, A)
n = 33 (10.19%)
Serine (Ser, S)
n = 20 (6.17%)
Threonine (Thr, T)
n = 21 (6.48%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 17 (5.25%)
Leucine (Leu, L)
n = 64 (19.75%)
Isoleucine (Ile, I)
n = 25 (7.72%)
Methionine (Met, M)
n = 12 (3.7%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 18 (5.56%)
Tyrosine (Tyr, Y)
n = 11 (3.4%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 11 (3.4%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 5 (1.54%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 6 10 11 18 15 5 14 6 0 4 4 8 1 10 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 4 20 7 2 2 9 4 4 5 12 7 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 5 2 3 8 5 0 2 2 2 9 1 1 4 7 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 6 5 0 4 6 1 1 3 4 0 0 0 1 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
84 92 80 69
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 94 56 136
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 123 105 73
ND2 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.61%)
Alanine (Ala, A)
n = 38 (10.95%)
Serine (Ser, S)
n = 24 (6.92%)
Threonine (Thr, T)
n = 41 (11.82%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 7 (2.02%)
Leucine (Leu, L)
n = 85 (24.5%)
Isoleucine (Ile, I)
n = 21 (6.05%)
Methionine (Met, M)
n = 13 (3.75%)
Proline (Pro, P)
n = 22 (6.34%)
Phenylalanine (Phe, F)
n = 10 (2.88%)
Tyrosine (Tyr, Y)
n = 9 (2.59%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 12 (3.46%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 8 (2.31%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 9 10 21 16 21 9 15 9 5 2 2 3 0 4 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 9 20 9 0 2 6 6 2 4 13 5 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
23 10 0 4 9 7 0 2 2 3 6 0 3 3 9 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 4 0 1 2 8 0 0 1 3 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 113 99 68
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 121 56 136
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 126 121 79
ND3 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.61%)
Alanine (Ala, A)
n = 38 (10.95%)
Serine (Ser, S)
n = 24 (6.92%)
Threonine (Thr, T)
n = 41 (11.82%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 7 (2.02%)
Leucine (Leu, L)
n = 85 (24.5%)
Isoleucine (Ile, I)
n = 21 (6.05%)
Methionine (Met, M)
n = 13 (3.75%)
Proline (Pro, P)
n = 22 (6.34%)
Phenylalanine (Phe, F)
n = 10 (2.88%)
Tyrosine (Tyr, Y)
n = 9 (2.59%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 12 (3.46%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 6 (1.73%)
Lysine (Lys, K)
n = 8 (2.31%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 9 10 21 16 21 9 15 9 5 2 2 3 0 4 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 9 20 9 0 2 6 6 2 4 13 5 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
23 10 0 4 9 7 0 2 2 3 6 0 3 3 9 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 4 0 1 2 8 0 0 1 3 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 113 99 68
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 121 56 136
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 126 121 79
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (5.66%)
Alanine (Ala, A)
n = 39 (8.5%)
Serine (Ser, S)
n = 33 (7.19%)
Threonine (Thr, T)
n = 40 (8.71%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 18 (3.92%)
Leucine (Leu, L)
n = 96 (20.92%)
Isoleucine (Ile, I)
n = 30 (6.54%)
Methionine (Met, M)
n = 27 (5.88%)
Proline (Pro, P)
n = 28 (6.1%)
Phenylalanine (Phe, F)
n = 18 (3.92%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 19 (4.14%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 12 (2.61%)
Asparagine (Asn, N)
n = 14 (3.05%)
Glutamine (Gln, Q)
n = 9 (1.96%)
Histidine (His, H)
n = 10 (2.18%)
Lysine (Lys, K)
n = 8 (1.74%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 10 19 23 22 24 10 13 9 0 6 3 9 0 9 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 2 2 4 20 15 0 2 15 7 2 7 13 8 0 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 18 0 9 10 5 1 2 6 4 10 5 4 3 11 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 10 2 1 3 8 0 1 2 8 0 0 0 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
99 137 127 97
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
68 132 71 189
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
32 155 167 106
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 14 (14.29%)
Serine (Ser, S)
n = 10 (10.2%)
Threonine (Thr, T)
n = 7 (7.14%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 26 (26.53%)
Isoleucine (Ile, I)
n = 1 (1.02%)
Methionine (Met, M)
n = 3 (3.06%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 7 (7.14%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 2 (2.04%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 1 (1.02%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 0 2 5 6 6 1 7 3 0 0 1 2 0 3 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 2 2 6 5 1 1 2 1 1 1 1 1 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 2 0 1 3 2 1 0 3 0 0 1 1 1 0 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 1 1 1 1 0 0 0 1 2 0 0 0 0 1 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
26 31 15 27
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
15 31 13 40
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 34 34 22
ND5 (size: 1842 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 34 (5.55%)
Alanine (Ala, A)
n = 56 (9.14%)
Serine (Ser, S)
n = 37 (6.04%)
Threonine (Thr, T)
n = 64 (10.44%)
Cysteine (Cys, C)
n = 9 (1.47%)
Valine (Val, V)
n = 24 (3.92%)
Leucine (Leu, L)
n = 97 (15.82%)
Isoleucine (Ile, I)
n = 52 (8.48%)
Methionine (Met, M)
n = 27 (4.4%)
Proline (Pro, P)
n = 32 (5.22%)
Phenylalanine (Phe, F)
n = 41 (6.69%)
Tyrosine (Tyr, Y)
n = 9 (1.47%)
Tryptophan (Trp, W)
n = 15 (2.45%)
Aspartic acid (Asp, D)
n = 16 (2.61%)
Glutamic acid (Glu, E)
n = 14 (2.28%)
Asparagine (Asn, N)
n = 25 (4.08%)
Glutamine (Gln, Q)
n = 18 (2.94%)
Histidine (His, H)
n = 11 (1.79%)
Lysine (Lys, K)
n = 18 (2.94%)
Arginine (Arg, R)
n = 14 (2.28%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
28 24 17 23 19 31 4 17 15 3 11 6 5 2 23 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 4 5 11 34 10 1 2 16 13 3 9 14 8 1 18
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
25 20 1 6 12 7 1 3 8 1 8 2 3 8 17 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 12 2 6 10 14 4 0 4 9 1 0 0 0 1 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
144 152 197 121
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
83 178 112 241
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
39 231 191 153
ND6 (size: 519 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.53%)
Alanine (Ala, A)
n = 23 (13.37%)
Serine (Ser, S)
n = 14 (8.14%)
Threonine (Thr, T)
n = 4 (2.33%)
Cysteine (Cys, C)
n = 3 (1.74%)
Valine (Val, V)
n = 23 (13.37%)
Leucine (Leu, L)
n = 20 (11.63%)
Isoleucine (Ile, I)
n = 4 (2.33%)
Methionine (Met, M)
n = 7 (4.07%)
Proline (Pro, P)
n = 4 (2.33%)
Phenylalanine (Phe, F)
n = 14 (8.14%)
Tyrosine (Tyr, Y)
n = 8 (4.65%)
Tryptophan (Trp, W)
n = 5 (2.91%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 6 (3.49%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 2 (1.16%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 5 (2.91%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 0 4 5 0 1 3 7 0 2 13 2 4 4 12 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 3 0 7 2 8 6 1 3 4 17 4 0 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 2 0 1 1 1 4 4 3 7 1 2 4 0 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 3 3 2 0 1 0 2 0 1 2 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
79 21 24 49
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
45 38 22 68
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
50 17 40 66
Total protein-coding genes (size: 11428 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 246 (6.46%)
Alanine (Ala, A)
n = 352 (9.25%)
Serine (Ser, S)
n = 237 (6.23%)
Threonine (Thr, T)
n = 301 (7.91%)
Cysteine (Cys, C)
n = 28 (0.74%)
Valine (Val, V)
n = 219 (5.75%)
Leucine (Leu, L)
n = 674 (17.71%)
Isoleucine (Ile, I)
n = 262 (6.88%)
Methionine (Met, M)
n = 151 (3.97%)
Proline (Pro, P)
n = 220 (5.78%)
Phenylalanine (Phe, F)
n = 236 (6.2%)
Tyrosine (Tyr, Y)
n = 112 (2.94%)
Tryptophan (Trp, W)
n = 120 (3.15%)
Aspartic acid (Asp, D)
n = 80 (2.1%)
Glutamic acid (Glu, E)
n = 102 (2.68%)
Asparagine (Asn, N)
n = 113 (2.97%)
Glutamine (Gln, Q)
n = 97 (2.55%)
Histidine (His, H)
n = 100 (2.63%)
Lysine (Lys, K)
n = 70 (1.84%)
Arginine (Arg, R)
n = 80 (2.1%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
171 91 100 164 148 165 50 121 76 21 74 52 76 17 122 114
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
51 15 13 71 160 103 18 26 100 66 54 57 98 52 13 77
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
109 107 8 44 77 54 8 16 38 35 77 23 26 35 78 25
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
75 72 30 35 45 61 9 12 17 45 6 0 0 5 2 97
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
999 1024 951 833
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
528 1056 681 1542
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
336 1292 1200 979 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​M​o​r​o​n​e​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ s​a​x​a​t​i​l​i​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.