Viewing data for Dryocopus pileatus


Scientific name Dryocopus pileatus
Common name Pileated woodpecker
Maximum lifespan 13.00 years (Dryocopus pileatus@AnAge)

Total mtDNA (size: 16832 bases) GC AT G C A T
Base content (bases) 8332 8500 5845 2487 3880 4620
Base content per 1 kb (bases) 495 505 347 148 231 274
Base content (%) 49.5% 50.5%
Total protein-coding genes (size: 11363 bases) GC AT G C A T
Base content (bases) 5756 5607 4226 1530 2619 2988
Base content per 1 kb (bases) 507 493 372 135 230 263
Base content (%) 50.7% 49.3%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1543 bases) GC AT G C A T
Base content (bases) 695 848 414 281 365 483
Base content per 1 kb (bases) 450 550 268 182 237 313
Base content (%) 45.0% 55.0%
Total rRNA-coding genes (size: 2576 bases) GC AT G C A T
Base content (bases) 1296 1280 794 502 474 806
Base content per 1 kb (bases) 503 497 308 195 184 313
Base content (%) 50.3% 49.7%
12S rRNA gene (size: 973 bases) GC AT G C A T
Base content (bases) 499 474 304 195 186 288
Base content per 1 kb (bases) 513 487 312 200 191 296
Base content (%) 51.3% 48.7%
16S rRNA gene (size: 1603 bases) GC AT G C A T
Base content (bases) 797 806 490 307 288 518
Base content per 1 kb (bases) 497 503 306 192 180 323
Base content (%) 49.7% 50.3%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 358 326 272 86 160 166
Base content per 1 kb (bases) 523 477 398 126 234 243
Base content (%) 52.3% 47.7%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 80 88 67 13 36 52
Base content per 1 kb (bases) 476 524 399 77 214 310
Base content (%) 47.6% 52.4%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 795 756 534 261 363 393
Base content per 1 kb (bases) 513 487 344 168 234 253
Base content (%) 51.3% 48.7%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 338 346 215 123 174 172
Base content per 1 kb (bases) 494 506 314 180 254 251
Base content (%) 49.4% 50.6%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 399 385 272 127 191 194
Base content per 1 kb (bases) 509 491 347 162 244 247
Base content (%) 50.9% 49.1%
CYTB (size: 1143 bases) GC AT G C A T
Base content (bases) 585 558 424 161 291 267
Base content per 1 kb (bases) 512 488 371 141 255 234
Base content (%) 51.2% 48.8%
ND1 (size: 972 bases) GC AT G C A T
Base content (bases) 503 469 366 137 242 227
Base content per 1 kb (bases) 517 483 377 141 249 234
Base content (%) 51.7% 48.3%
ND2 (size: 1041 bases) GC AT G C A T
Base content (bases) 506 535 406 100 226 309
Base content per 1 kb (bases) 486 514 390 96 217 297
Base content (%) 48.6% 51.4%
ND3 (size: 352 bases) GC AT G C A T
Base content (bases) 175 177 132 43 89 88
Base content per 1 kb (bases) 497 503 375 122 253 250
Base content (%) 49.7% 50.3%
ND4 (size: 1368 bases) GC AT G C A T
Base content (bases) 699 669 545 154 311 358
Base content per 1 kb (bases) 511 489 398 113 227 262
Base content (%) 51.1% 48.9%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 149 148 105 44 69 79
Base content per 1 kb (bases) 502 498 354 148 232 266
Base content (%) 50.2% 49.8%
ND5 (size: 1815 bases) GC AT G C A T
Base content (bases) 919 896 692 227 406 490
Base content per 1 kb (bases) 506 494 381 125 224 270
Base content (%) 50.6% 49.4%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 253 269 197 56 67 202
Base content per 1 kb (bases) 485 515 377 107 128 387
Base content (%) 48.5% 51.5%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.96%)
Alanine (Ala, A)
n = 16 (7.05%)
Serine (Ser, S)
n = 19 (8.37%)
Threonine (Thr, T)
n = 22 (9.69%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 8 (3.52%)
Leucine (Leu, L)
n = 60 (26.43%)
Isoleucine (Ile, I)
n = 19 (8.37%)
Methionine (Met, M)
n = 9 (3.96%)
Proline (Pro, P)
n = 16 (7.05%)
Phenylalanine (Phe, F)
n = 7 (3.08%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 2 (0.88%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 3 (1.32%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 15 6 6 24 17 9 3 7 1 0 5 2 1 1 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 1 0 12 2 2 2 5 1 1 0 9 5 2 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 9 0 3 7 3 0 0 6 0 3 0 1 1 7 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 4 0 1 1 2 1 0 4 1 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
39 88 67 34
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 67 32 103
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 117 67 23
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPNPWFFIMLLSWLTFSLMIQPKLLSFPHTNPPTSKSTTAAKTTPWAWPWT*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 3 (5.45%)
Serine (Ser, S)
n = 5 (9.09%)
Threonine (Thr, T)
n = 8 (14.55%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 7 (12.73%)
Isoleucine (Ile, I)
n = 2 (3.64%)
Methionine (Met, M)
n = 3 (5.45%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 1 (1.82%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 2 2 1 2 3 1 0 2 0 0 0 0 0 0 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 2 1 0 0 0 0 0 0 1 5 3 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 1 2 1 1 2 0 0 1 0 0 0 0 0 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 0 0 0 0 3 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
3 19 20 14
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 24 10 16
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 24 22 6
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 47 (9.11%)
Serine (Ser, S)
n = 26 (5.04%)
Threonine (Thr, T)
n = 39 (7.56%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 33 (6.4%)
Leucine (Leu, L)
n = 62 (12.02%)
Isoleucine (Ile, I)
n = 42 (8.14%)
Methionine (Met, M)
n = 25 (4.84%)
Proline (Pro, P)
n = 30 (5.81%)
Phenylalanine (Phe, F)
n = 41 (7.95%)
Tyrosine (Tyr, Y)
n = 19 (3.68%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 17 (3.29%)
Glutamine (Gln, Q)
n = 9 (1.74%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 35 17 4 29 18 7 4 9 0 3 15 14 1 10 31
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 0 1 9 26 10 2 3 23 18 3 6 10 11 3 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
21 12 3 2 11 10 0 0 3 1 18 0 0 1 16 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
15 8 2 2 13 7 2 0 4 4 0 0 1 0 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
152 124 136 105
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 139 98 203
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
32 271 159 55
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 16 (7.05%)
Serine (Ser, S)
n = 20 (8.81%)
Threonine (Thr, T)
n = 13 (5.73%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 14 (6.17%)
Leucine (Leu, L)
n = 31 (13.66%)
Isoleucine (Ile, I)
n = 19 (8.37%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 13 (5.73%)
Phenylalanine (Phe, F)
n = 11 (4.85%)
Tyrosine (Tyr, Y)
n = 7 (3.08%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 13 (5.73%)
Glutamic acid (Glu, E)
n = 15 (6.61%)
Asparagine (Asn, N)
n = 5 (2.2%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 8 (3.52%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 12 5 8 9 7 5 0 3 4 3 6 4 1 2 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 2 1 9 5 1 1 4 2 1 0 5 3 5 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 5 0 3 7 6 2 0 2 4 3 0 2 1 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 8 7 5 8 4 0 1 2 1 1 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
66 62 53 47
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
23 60 60 85
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
34 93 59 42
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 23 (8.85%)
Serine (Ser, S)
n = 18 (6.92%)
Threonine (Thr, T)
n = 21 (8.08%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 13 (5.0%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 16 (6.15%)
Methionine (Met, M)
n = 10 (3.85%)
Proline (Pro, P)
n = 11 (4.23%)
Phenylalanine (Phe, F)
n = 22 (8.46%)
Tyrosine (Tyr, Y)
n = 10 (3.85%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 4 (1.54%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 18 (6.92%)
Lysine (Lys, K)
n = 4 (1.54%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 10 9 4 11 10 6 2 6 1 0 9 3 1 5 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 5 11 7 0 1 10 7 1 1 8 2 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 8 0 3 5 5 1 0 4 3 7 0 1 0 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
16 4 4 0 5 2 2 0 3 2 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 72 59 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 69 56 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 131 79 33
CYTB (size: 1143 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.32%)
Alanine (Ala, A)
n = 27 (7.11%)
Serine (Ser, S)
n = 26 (6.84%)
Threonine (Thr, T)
n = 26 (6.84%)
Cysteine (Cys, C)
n = 4 (1.05%)
Valine (Val, V)
n = 20 (5.26%)
Leucine (Leu, L)
n = 66 (17.37%)
Isoleucine (Ile, I)
n = 29 (7.63%)
Methionine (Met, M)
n = 9 (2.37%)
Proline (Pro, P)
n = 25 (6.58%)
Phenylalanine (Phe, F)
n = 31 (8.16%)
Tyrosine (Tyr, Y)
n = 12 (3.16%)
Tryptophan (Trp, W)
n = 11 (2.89%)
Aspartic acid (Asp, D)
n = 7 (1.84%)
Glutamic acid (Glu, E)
n = 7 (1.84%)
Asparagine (Asn, N)
n = 19 (5.0%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 12 (3.16%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 20 7 13 25 17 9 2 7 1 4 9 5 2 5 26
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 3 2 18 7 0 1 12 7 4 3 18 3 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 6 1 1 13 8 1 0 3 1 11 1 0 3 16 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 5 2 2 5 7 2 1 2 5 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
85 117 95 84
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
50 101 75 155
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
26 206 97 52
ND1 (size: 972 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (4.02%)
Alanine (Ala, A)
n = 32 (9.91%)
Serine (Ser, S)
n = 31 (9.6%)
Threonine (Thr, T)
n = 19 (5.88%)
Cysteine (Cys, C)
n = 2 (0.62%)
Valine (Val, V)
n = 11 (3.41%)
Leucine (Leu, L)
n = 67 (20.74%)
Isoleucine (Ile, I)
n = 25 (7.74%)
Methionine (Met, M)
n = 10 (3.1%)
Proline (Pro, P)
n = 24 (7.43%)
Phenylalanine (Phe, F)
n = 17 (5.26%)
Tyrosine (Tyr, Y)
n = 14 (4.33%)
Tryptophan (Trp, W)
n = 9 (2.79%)
Aspartic acid (Asp, D)
n = 4 (1.24%)
Glutamic acid (Glu, E)
n = 11 (3.41%)
Asparagine (Asn, N)
n = 12 (3.72%)
Glutamine (Gln, Q)
n = 5 (1.55%)
Histidine (His, H)
n = 2 (0.62%)
Lysine (Lys, K)
n = 7 (2.17%)
Arginine (Arg, R)
n = 8 (2.48%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 19 9 9 26 21 5 4 5 0 1 2 6 2 5 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 2 1 23 7 1 1 7 2 3 1 16 5 2 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 4 1 3 15 7 0 1 5 4 10 2 2 5 7 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 6 5 0 4 5 2 1 3 4 0 0 1 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 100 80 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 100 55 130
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 166 92 39
ND2 (size: 1041 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (3.18%)
Alanine (Ala, A)
n = 27 (7.8%)
Serine (Ser, S)
n = 32 (9.25%)
Threonine (Thr, T)
n = 50 (14.45%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 5 (1.45%)
Leucine (Leu, L)
n = 67 (19.36%)
Isoleucine (Ile, I)
n = 35 (10.12%)
Methionine (Met, M)
n = 14 (4.05%)
Proline (Pro, P)
n = 21 (6.07%)
Phenylalanine (Phe, F)
n = 13 (3.76%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 15 (4.34%)
Glutamine (Gln, Q)
n = 9 (2.6%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 29 10 7 29 24 3 2 7 2 0 4 1 0 2 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 2 16 7 2 1 6 4 0 2 14 5 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
30 20 0 1 10 13 3 1 4 4 3 2 2 2 13 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 5 0 0 1 11 2 0 1 2 0 0 0 0 1 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
49 103 132 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 125 58 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 178 119 29
ND3 (size: 1041 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (3.18%)
Alanine (Ala, A)
n = 27 (7.8%)
Serine (Ser, S)
n = 32 (9.25%)
Threonine (Thr, T)
n = 50 (14.45%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 5 (1.45%)
Leucine (Leu, L)
n = 67 (19.36%)
Isoleucine (Ile, I)
n = 35 (10.12%)
Methionine (Met, M)
n = 14 (4.05%)
Proline (Pro, P)
n = 21 (6.07%)
Phenylalanine (Phe, F)
n = 13 (3.76%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 15 (4.34%)
Glutamine (Gln, Q)
n = 9 (2.6%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 29 10 7 29 24 3 2 7 2 0 4 1 0 2 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 2 16 7 2 1 6 4 0 2 14 5 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
30 20 0 1 10 13 3 1 4 4 3 2 2 2 13 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 5 0 0 1 11 2 0 1 2 0 0 0 0 1 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
49 103 132 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
30 125 58 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 178 119 29
ND4 (size: 1368 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (3.3%)
Alanine (Ala, A)
n = 33 (7.25%)
Serine (Ser, S)
n = 40 (8.79%)
Threonine (Thr, T)
n = 52 (11.43%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 10 (2.2%)
Leucine (Leu, L)
n = 101 (22.2%)
Isoleucine (Ile, I)
n = 35 (7.69%)
Methionine (Met, M)
n = 22 (4.84%)
Proline (Pro, P)
n = 31 (6.81%)
Phenylalanine (Phe, F)
n = 15 (3.3%)
Tyrosine (Tyr, Y)
n = 14 (3.08%)
Tryptophan (Trp, W)
n = 12 (2.64%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 10 (2.2%)
Asparagine (Asn, N)
n = 10 (2.2%)
Glutamine (Gln, Q)
n = 12 (2.64%)
Histidine (His, H)
n = 15 (3.3%)
Lysine (Lys, K)
n = 10 (2.2%)
Arginine (Arg, R)
n = 12 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 30 20 5 45 34 10 6 11 1 1 6 3 0 3 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 1 4 18 10 1 2 9 3 1 1 21 8 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
31 10 4 4 18 6 1 2 9 3 11 3 1 1 9 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 8 2 0 3 8 2 3 2 6 1 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 164 140 81
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 145 75 183
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
30 236 143 47
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 11 (11.22%)
Serine (Ser, S)
n = 12 (12.24%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 4 (4.08%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 20 (20.41%)
Isoleucine (Ile, I)
n = 3 (3.06%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 2 (2.04%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 3 (3.06%)
Glutamine (Gln, Q)
n = 1 (1.02%)
Histidine (His, H)
n = 7 (7.14%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 3 5 3 3 9 4 1 1 0 0 1 2 0 0 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 2 2 2 7 1 1 0 3 0 1 0 1 2 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 4 0 0 2 7 0 1 2 1 1 0 0 0 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 2 1 1 0 0 0 0 0 2 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
22 32 23 22
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 31 18 36
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 42 38 11
ND5 (size: 1815 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 32 (5.3%)
Alanine (Ala, A)
n = 51 (8.44%)
Serine (Ser, S)
n = 49 (8.11%)
Threonine (Thr, T)
n = 64 (10.6%)
Cysteine (Cys, C)
n = 5 (0.83%)
Valine (Val, V)
n = 16 (2.65%)
Leucine (Leu, L)
n = 108 (17.88%)
Isoleucine (Ile, I)
n = 56 (9.27%)
Methionine (Met, M)
n = 23 (3.81%)
Proline (Pro, P)
n = 37 (6.13%)
Phenylalanine (Phe, F)
n = 30 (4.97%)
Tyrosine (Tyr, Y)
n = 11 (1.82%)
Tryptophan (Trp, W)
n = 12 (1.99%)
Aspartic acid (Asp, D)
n = 8 (1.32%)
Glutamic acid (Glu, E)
n = 13 (2.15%)
Asparagine (Asn, N)
n = 28 (4.64%)
Glutamine (Gln, Q)
n = 17 (2.81%)
Histidine (His, H)
n = 14 (2.32%)
Lysine (Lys, K)
n = 20 (3.31%)
Arginine (Arg, R)
n = 10 (1.66%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 44 19 8 51 35 7 5 14 3 4 5 5 2 6 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 5 9 33 7 2 5 19 7 1 4 24 5 4 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
35 21 3 7 16 11 3 0 12 1 10 1 2 4 24 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 10 3 3 5 20 0 1 5 4 0 1 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
120 179 204 102
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
72 189 111 233
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
35 324 175 71
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 29 (16.76%)
Alanine (Ala, A)
n = 13 (7.51%)
Serine (Ser, S)
n = 11 (6.36%)
Threonine (Thr, T)
n = 5 (2.89%)
Cysteine (Cys, C)
n = 3 (1.73%)
Valine (Val, V)
n = 33 (19.08%)
Leucine (Leu, L)
n = 27 (15.61%)
Isoleucine (Ile, I)
n = 2 (1.16%)
Methionine (Met, M)
n = 7 (4.05%)
Proline (Pro, P)
n = 4 (2.31%)
Phenylalanine (Phe, F)
n = 12 (6.94%)
Tyrosine (Tyr, Y)
n = 7 (4.05%)
Tryptophan (Trp, W)
n = 6 (3.47%)
Aspartic acid (Asp, D)
n = 4 (2.31%)
Glutamic acid (Glu, E)
n = 3 (1.73%)
Asparagine (Asn, N)
n = 2 (1.16%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 4 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 1 1 1 1 3 7 0 0 13 1 5 14 10 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 3 0 2 1 4 6 6 1 5 17 2 1 0 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 0 5 1 1 1 3 0 6 1 4 14 2 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 1 2 2 0 1 1 1 0 2 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
82 14 20 58
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
45 30 18 81
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
70 12 29 63
Total protein-coding genes (size: 11380 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 216 (5.7%)
Alanine (Ala, A)
n = 307 (8.1%)
Serine (Ser, S)
n = 297 (7.83%)
Threonine (Thr, T)
n = 336 (8.86%)
Cysteine (Cys, C)
n = 30 (0.79%)
Valine (Val, V)
n = 167 (4.4%)
Leucine (Leu, L)
n = 678 (17.88%)
Isoleucine (Ile, I)
n = 296 (7.81%)
Methionine (Met, M)
n = 150 (3.96%)
Proline (Pro, P)
n = 231 (6.09%)
Phenylalanine (Phe, F)
n = 215 (5.67%)
Tyrosine (Tyr, Y)
n = 108 (2.85%)
Tryptophan (Trp, W)
n = 109 (2.87%)
Aspartic acid (Asp, D)
n = 66 (1.74%)
Glutamic acid (Glu, E)
n = 95 (2.51%)
Asparagine (Asn, N)
n = 129 (3.4%)
Glutamine (Gln, Q)
n = 89 (2.35%)
Histidine (His, H)
n = 106 (2.8%)
Lysine (Lys, K)
n = 84 (2.22%)
Arginine (Arg, R)
n = 72 (1.9%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
68 228 112 71 273 202 70 36 76 13 29 63 51 24 52 163
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
38 11 19 40 180 69 18 23 101 58 34 21 135 55 20 35
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
184 103 14 34 110 80 13 8 52 28 80 13 26 20 109 19
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
87 67 28 16 50 70 14 8 27 33 4 1 2 8 1 96
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
851 1114 1058 770
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
490 1111 686 1506
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
332 1861 1117 483 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​D​r​y​o​c​o​p​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ p​i​l​e​a​t​u​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.