Viewing data for Merlangius merlangus


Scientific name Merlangius merlangus
Common name English whiting
Maximum lifespan 20.00 years (Merlangius merlangus@AnAge)

Total mtDNA (size: 16569 bases) GC AT G C A T
Base content (bases) 6794 9771 4110 2684 4993 4778
Base content per 1 kb (bases) 410 590 248 162 301 288
Base content (%) 41.0% 59.0%
Total protein-coding genes (size: 11409 bases) GC AT G C A T
Base content (bases) 4572 6834 2905 1667 3690 3144
Base content per 1 kb (bases) 401 599 255 146 323 276
Base content (%) 40.1% 59.9%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1535 bases) GC AT G C A T
Base content (bases) 701 834 387 314 372 462
Base content per 1 kb (bases) 457 543 252 205 242 301
Base content (%) 45.7% 54.3%
Total rRNA-coding genes (size: 2617 bases) GC AT G C A T
Base content (bases) 1153 1464 604 549 609 855
Base content per 1 kb (bases) 441 559 231 210 233 327
Base content (%) 44.1% 55.9%
12S rRNA gene (size: 950 bases) GC AT G C A T
Base content (bases) 429 521 220 209 216 305
Base content per 1 kb (bases) 452 548 232 220 227 321
Base content (%) 45.2% 54.8%
16S rRNA gene (size: 1667 bases) GC AT G C A T
Base content (bases) 724 943 384 340 393 550
Base content per 1 kb (bases) 434 566 230 204 236 330
Base content (%) 43.4% 56.6%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 255 428 174 81 239 189
Base content per 1 kb (bases) 373 626 254 118 349 276
Base content (%) 37.3% 62.6%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 66 102 51 15 49 53
Base content per 1 kb (bases) 393 607 304 89 292 315
Base content (%) 39.3% 60.7%
COX1 (size: 1554 bases) GC AT G C A T
Base content (bases) 644 910 379 265 504 406
Base content per 1 kb (bases) 414 586 244 171 324 261
Base content (%) 41.4% 58.6%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 274 417 171 103 208 209
Base content per 1 kb (bases) 397 603 247 149 301 302
Base content (%) 39.7% 60.3%
COX3 (size: 786 bases) GC AT G C A T
Base content (bases) 327 458 199 128 249 209
Base content per 1 kb (bases) 416 583 253 163 317 266
Base content (%) 41.6% 58.3%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 452 689 283 169 394 295
Base content per 1 kb (bases) 396 604 248 148 345 259
Base content (%) 39.6% 60.4%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 400 574 253 147 332 242
Base content per 1 kb (bases) 410 589 259 151 341 248
Base content (%) 41.0% 58.9%
ND2 (size: 1045 bases) GC AT G C A T
Base content (bases) 407 638 273 134 334 304
Base content per 1 kb (bases) 389 611 261 128 320 291
Base content (%) 38.9% 61.1%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 135 214 86 49 129 85
Base content per 1 kb (bases) 387 613 246 140 370 244
Base content (%) 38.7% 61.3%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 527 854 331 196 480 374
Base content per 1 kb (bases) 382 618 240 142 348 271
Base content (%) 38.2% 61.8%
ND4L (size: 300 bases) GC AT G C A T
Base content (bases) 129 171 84 45 99 72
Base content per 1 kb (bases) 430 570 280 150 330 240
Base content (%) 43.0% 57.0%
ND5 (size: 1836 bases) GC AT G C A T
Base content (bases) 733 1103 471 262 584 519
Base content per 1 kb (bases) 399 601 257 143 318 283
Base content (%) 39.9% 60.1%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 230 292 155 75 94 198
Base content per 1 kb (bases) 441 559 297 144 180 379
Base content (%) 44.1% 55.9%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 18 (7.93%)
Serine (Ser, S)
n = 14 (6.17%)
Threonine (Thr, T)
n = 18 (7.93%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (6.17%)
Leucine (Leu, L)
n = 52 (22.91%)
Isoleucine (Ile, I)
n = 18 (7.93%)
Methionine (Met, M)
n = 14 (6.17%)
Proline (Pro, P)
n = 17 (7.49%)
Phenylalanine (Phe, F)
n = 12 (5.29%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 7 (3.08%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 5 (2.2%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 3 11 16 6 14 1 15 7 0 8 2 4 0 8 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 5 6 7 0 3 2 6 0 8 3 6 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 8 1 4 1 3 0 1 5 2 1 0 0 4 3 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 4 0 1 0 1 0 1 1 4 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
48 72 63 44
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
28 60 29 110
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 41 96 85
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFMIFMFTWAIFLTILPPKVMAHTFPNEPSPQGMTTPKTAPWNWPWH*
Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.82%)
Alanine (Ala, A)
n = 4 (7.27%)
Serine (Ser, S)
n = 1 (1.82%)
Threonine (Thr, T)
n = 6 (10.91%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.82%)
Leucine (Leu, L)
n = 3 (5.45%)
Isoleucine (Ile, I)
n = 3 (5.45%)
Methionine (Met, M)
n = 5 (9.09%)
Proline (Pro, P)
n = 11 (20.0%)
Phenylalanine (Phe, F)
n = 5 (9.09%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 1 (1.82%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 0 3 1 0 1 0 1 2 0 0 0 1 0 2 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 1 1 2 0 1 0 0 0 4 5 2 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 2 0 1 0 0 0 0 0 0 0 0 0 1 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 0 0 0 2 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
7 17 19 13
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 22 11 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
2 12 23 19
COX1 (size: 1554 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.9%)
Alanine (Ala, A)
n = 48 (9.28%)
Serine (Ser, S)
n = 27 (5.22%)
Threonine (Thr, T)
n = 36 (6.96%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 39 (7.54%)
Leucine (Leu, L)
n = 62 (11.99%)
Isoleucine (Ile, I)
n = 40 (7.74%)
Methionine (Met, M)
n = 28 (5.42%)
Proline (Pro, P)
n = 28 (5.42%)
Phenylalanine (Phe, F)
n = 42 (8.12%)
Tyrosine (Tyr, Y)
n = 18 (3.48%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.9%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 14 (2.71%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 10 (1.93%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
32 8 21 16 12 17 7 10 7 1 14 6 17 2 20 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 1 0 12 19 17 0 13 11 16 6 9 11 7 1 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 22 0 12 2 8 1 2 2 10 8 0 0 9 5 11
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 8 3 8 7 8 0 2 2 6 0 0 0 1 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
159 117 130 112
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 135 94 211
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
28 127 182 181
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 18 (7.86%)
Serine (Ser, S)
n = 17 (7.42%)
Threonine (Thr, T)
n = 9 (3.93%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 17 (7.42%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 22 (9.61%)
Methionine (Met, M)
n = 11 (4.8%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 4 (1.75%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 7 9 9 3 7 0 9 8 0 7 5 5 0 6 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 0 1 7 9 1 3 1 5 0 5 4 4 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 3 0 2 3 9 0 1 2 6 3 0 0 1 3 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 14 1 7 6 4 0 1 2 2 1 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 57 53 48
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 55 63 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 59 93 72
COX3 (size: 786 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.43%)
Alanine (Ala, A)
n = 20 (7.66%)
Serine (Ser, S)
n = 13 (4.98%)
Threonine (Thr, T)
n = 26 (9.96%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 16 (6.13%)
Leucine (Leu, L)
n = 31 (11.88%)
Isoleucine (Ile, I)
n = 15 (5.75%)
Methionine (Met, M)
n = 8 (3.07%)
Proline (Pro, P)
n = 12 (4.6%)
Phenylalanine (Phe, F)
n = 24 (9.2%)
Tyrosine (Tyr, Y)
n = 12 (4.6%)
Tryptophan (Trp, W)
n = 12 (4.6%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.83%)
Asparagine (Asn, N)
n = 2 (0.77%)
Glutamine (Gln, Q)
n = 7 (2.68%)
Histidine (His, H)
n = 16 (6.13%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 6 (2.3%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 6 6 11 2 11 0 7 6 1 7 2 6 1 10 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 7 1 12 0 4 11 5 2 6 3 3 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 12 0 2 2 6 0 2 1 8 4 1 0 2 0 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 7 2 2 3 2 0 2 0 3 1 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 65 56 68
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
45 68 54 94
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 66 98 87
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 29 (7.65%)
Serine (Ser, S)
n = 21 (5.54%)
Threonine (Thr, T)
n = 24 (6.33%)
Cysteine (Cys, C)
n = 2 (0.53%)
Valine (Val, V)
n = 33 (8.71%)
Leucine (Leu, L)
n = 57 (15.04%)
Isoleucine (Ile, I)
n = 22 (5.8%)
Methionine (Met, M)
n = 14 (3.69%)
Proline (Pro, P)
n = 22 (5.8%)
Phenylalanine (Phe, F)
n = 34 (8.97%)
Tyrosine (Tyr, Y)
n = 12 (3.17%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 7 (1.85%)
Asparagine (Asn, N)
n = 19 (5.01%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 8 (2.11%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 8 12 19 5 19 2 12 6 0 13 3 14 3 17 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 0 8 13 8 0 8 6 12 0 12 5 4 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 10 0 8 5 7 0 0 1 8 4 1 0 13 6 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 6 1 6 5 6 2 1 2 4 1 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
106 93 88 93
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
50 95 75 160
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 95 132 140
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (5.25%)
Alanine (Ala, A)
n = 33 (10.19%)
Serine (Ser, S)
n = 28 (8.64%)
Threonine (Thr, T)
n = 22 (6.79%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 25 (7.72%)
Leucine (Leu, L)
n = 59 (18.21%)
Isoleucine (Ile, I)
n = 18 (5.56%)
Methionine (Met, M)
n = 11 (3.4%)
Proline (Pro, P)
n = 22 (6.79%)
Phenylalanine (Phe, F)
n = 19 (5.86%)
Tyrosine (Tyr, Y)
n = 13 (4.01%)
Tryptophan (Trp, W)
n = 7 (2.16%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 10 (3.09%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 3 (0.93%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 7 8 14 14 9 3 18 6 0 10 2 9 3 14 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 11 10 11 1 6 5 4 2 9 6 6 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 9 1 10 5 7 0 5 1 6 7 1 1 6 4 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 9 2 2 2 7 0 4 1 3 0 0 0 1 0 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
89 79 74 82
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 99 55 131
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 75 113 118
ND2 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.61%)
Alanine (Ala, A)
n = 38 (10.95%)
Serine (Ser, S)
n = 29 (8.36%)
Threonine (Thr, T)
n = 39 (11.24%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 9 (2.59%)
Leucine (Leu, L)
n = 66 (19.02%)
Isoleucine (Ile, I)
n = 27 (7.78%)
Methionine (Met, M)
n = 17 (4.9%)
Proline (Pro, P)
n = 20 (5.76%)
Phenylalanine (Phe, F)
n = 17 (4.9%)
Tyrosine (Tyr, Y)
n = 6 (1.73%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 12 (3.46%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 8 (2.31%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
22 5 13 15 8 15 3 23 11 3 2 0 5 2 13 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 0 12 12 14 0 4 4 7 1 7 7 5 1 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 20 1 9 4 9 0 3 4 5 1 1 2 8 4 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 2 2 1 2 4 4 0 1 2 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 86 110 82
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 119 54 136
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 68 140 115
ND3 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.61%)
Alanine (Ala, A)
n = 38 (10.95%)
Serine (Ser, S)
n = 29 (8.36%)
Threonine (Thr, T)
n = 39 (11.24%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 9 (2.59%)
Leucine (Leu, L)
n = 66 (19.02%)
Isoleucine (Ile, I)
n = 27 (7.78%)
Methionine (Met, M)
n = 17 (4.9%)
Proline (Pro, P)
n = 20 (5.76%)
Phenylalanine (Phe, F)
n = 17 (4.9%)
Tyrosine (Tyr, Y)
n = 6 (1.73%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 3 (0.86%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 12 (3.46%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 8 (2.31%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
22 5 13 15 8 15 3 23 11 3 2 0 5 2 13 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 0 12 12 14 0 4 4 7 1 7 7 5 1 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 20 1 9 4 9 0 3 4 5 1 1 2 8 4 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 2 2 1 2 4 4 0 1 2 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 86 110 82
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 119 54 136
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 68 140 115
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (6.1%)
Alanine (Ala, A)
n = 39 (8.5%)
Serine (Ser, S)
n = 30 (6.54%)
Threonine (Thr, T)
n = 40 (8.71%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 15 (3.27%)
Leucine (Leu, L)
n = 99 (21.57%)
Isoleucine (Ile, I)
n = 33 (7.19%)
Methionine (Met, M)
n = 29 (6.32%)
Proline (Pro, P)
n = 28 (6.1%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 18 (3.92%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 9 (1.96%)
Asparagine (Asn, N)
n = 13 (2.83%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 9 (1.96%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
29 4 24 41 9 23 1 22 10 1 8 1 5 1 13 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 4 0 18 11 10 0 9 5 11 3 13 9 4 2 14
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 13 4 6 2 12 0 3 7 9 5 5 3 11 2 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 8 1 2 2 6 4 3 0 8 0 0 0 0 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
95 133 135 97
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
71 127 70 192
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
30 71 169 190
ND4L (size: 300 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.05%)
Alanine (Ala, A)
n = 14 (14.14%)
Serine (Ser, S)
n = 8 (8.08%)
Threonine (Thr, T)
n = 10 (10.1%)
Cysteine (Cys, C)
n = 4 (4.04%)
Valine (Val, V)
n = 2 (2.02%)
Leucine (Leu, L)
n = 21 (21.21%)
Isoleucine (Ile, I)
n = 2 (2.02%)
Methionine (Met, M)
n = 7 (7.07%)
Proline (Pro, P)
n = 4 (4.04%)
Phenylalanine (Phe, F)
n = 5 (5.05%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.01%)
Aspartic acid (Asp, D)
n = 2 (2.02%)
Glutamic acid (Glu, E)
n = 2 (2.02%)
Asparagine (Asn, N)
n = 2 (2.02%)
Glutamine (Gln, Q)
n = 3 (3.03%)
Histidine (His, H)
n = 5 (5.05%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 6 6 3 4 1 6 2 1 0 0 2 0 4 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 2 2 6 5 2 1 1 2 1 1 3 1 0 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 5 0 2 3 2 0 1 0 0 0 1 1 2 0 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 0 2 0 0 0 0 0 2 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
25 28 22 25
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
13 35 15 37
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 21 35 37
ND5 (size: 1836 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 32 (5.24%)
Alanine (Ala, A)
n = 60 (9.82%)
Serine (Ser, S)
n = 48 (7.86%)
Threonine (Thr, T)
n = 60 (9.82%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 29 (4.75%)
Leucine (Leu, L)
n = 108 (17.68%)
Isoleucine (Ile, I)
n = 45 (7.36%)
Methionine (Met, M)
n = 26 (4.26%)
Proline (Pro, P)
n = 26 (4.26%)
Phenylalanine (Phe, F)
n = 35 (5.73%)
Tyrosine (Tyr, Y)
n = 9 (1.47%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 13 (2.13%)
Glutamic acid (Glu, E)
n = 13 (2.13%)
Asparagine (Asn, N)
n = 24 (3.93%)
Glutamine (Gln, Q)
n = 18 (2.95%)
Histidine (His, H)
n = 16 (2.62%)
Lysine (Lys, K)
n = 19 (3.11%)
Arginine (Arg, R)
n = 10 (1.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
36 9 21 27 13 30 3 32 15 3 10 8 9 2 24 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 5 1 20 19 20 1 9 9 9 5 7 10 7 2 19
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 21 1 13 10 8 0 8 9 8 1 0 3 7 17 8
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 9 4 9 4 12 7 0 3 7 0 0 0 1 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
147 143 191 131
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
79 177 113 243
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
36 151 215 210
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.45%)
Alanine (Ala, A)
n = 19 (10.98%)
Serine (Ser, S)
n = 11 (6.36%)
Threonine (Thr, T)
n = 3 (1.73%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 27 (15.61%)
Leucine (Leu, L)
n = 34 (19.65%)
Isoleucine (Ile, I)
n = 4 (2.31%)
Methionine (Met, M)
n = 7 (4.05%)
Proline (Pro, P)
n = 5 (2.89%)
Phenylalanine (Phe, F)
n = 6 (3.47%)
Tyrosine (Tyr, Y)
n = 8 (4.62%)
Tryptophan (Trp, W)
n = 7 (4.05%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 8 (4.62%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (1.73%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 0 5 9 1 4 2 14 0 0 7 2 10 8 5 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 0 11 1 2 5 9 4 6 6 3 0 1 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 4 2 3 1 1 0 7 1 1 4 0 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 5 3 2 0 0 0 2 0 0 1 0 1 0 0 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 25 17 51
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 37 20 78
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
35 13 57 69
Total protein-coding genes (size: 11432 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 244 (6.41%)
Alanine (Ala, A)
n = 348 (9.14%)
Serine (Ser, S)
n = 258 (6.78%)
Threonine (Thr, T)
n = 297 (7.8%)
Cysteine (Cys, C)
n = 26 (0.68%)
Valine (Val, V)
n = 230 (6.04%)
Leucine (Leu, L)
n = 650 (17.07%)
Isoleucine (Ile, I)
n = 257 (6.75%)
Methionine (Met, M)
n = 180 (4.73%)
Proline (Pro, P)
n = 217 (5.7%)
Phenylalanine (Phe, F)
n = 232 (6.09%)
Tyrosine (Tyr, Y)
n = 107 (2.81%)
Tryptophan (Trp, W)
n = 120 (3.15%)
Aspartic acid (Asp, D)
n = 77 (2.02%)
Glutamic acid (Glu, E)
n = 101 (2.65%)
Asparagine (Asn, N)
n = 113 (2.97%)
Glutamine (Gln, Q)
n = 93 (2.44%)
Histidine (His, H)
n = 105 (2.76%)
Lysine (Lys, K)
n = 70 (1.84%)
Arginine (Arg, R)
n = 76 (2.0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
198 59 141 192 79 162 23 178 83 10 88 32 87 22 143 89
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
39 20 6 114 109 116 9 71 61 86 26 90 67 50 10 92
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
67 129 8 77 41 76 2 28 34 70 37 11 16 64 49 54
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
51 80 20 45 32 52 18 17 12 42 5 0 1 7 0 109
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
998 947 979 882
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
529 1057 672 1548
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
220 825 1398 1363 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​M​e​r​l​a​n​g​i​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​e​r​l​a​n​g​u​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.