Viewing data for Thunnus thynnus
| Scientific name | Thunnus thynnus |
| Common name | Northern bluefin tuna |
| Maximum lifespan | 15.00 years (Thunnus thynnus@AnAge) |
| Total mtDNA (size: 16526 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 7620 | 8906 | 4858 | 2762 | 4211 | 4695 |
| Base content per 1 kb (bases) | 461 | 539 | 294 | 167 | 255 | 284 |
| Base content (%) | 46.1% | 53.9% | ||||
| Total protein-coding genes (size: 11411 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 5315 | 6096 | 3575 | 1740 | 3000 | 3096 |
| Base content per 1 kb (bases) | 466 | 534 | 313 | 152 | 263 | 271 |
| Base content (%) | 46.6% | 53.4% | ||||
| D-loop (size: 865 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 334 | 531 | 196 | 138 | 263 | 268 |
| Base content per 1 kb (bases) | 386 | 614 | 227 | 160 | 304 | 310 |
| Base content (%) | 38.6% | 61.4% | ||||
| Total tRNA-coding genes (size: 1551 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 706 | 845 | 387 | 319 | 383 | 462 |
| Base content per 1 kb (bases) | 455 | 545 | 250 | 206 | 247 | 298 |
| Base content (%) | 45.5% | 54.5% | ||||
| Total rRNA-coding genes (size: 2638 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1236 | 1402 | 681 | 555 | 551 | 851 |
| Base content per 1 kb (bases) | 469 | 531 | 258 | 210 | 209 | 323 |
| Base content (%) | 46.9% | 53.1% | ||||
| 12S rRNA gene (size: 946 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 462 | 484 | 250 | 212 | 200 | 284 |
| Base content per 1 kb (bases) | 488 | 512 | 264 | 224 | 211 | 300 |
| Base content (%) | 48.8% | 51.2% | ||||
| 16S rRNA gene (size: 1692 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 774 | 918 | 431 | 343 | 351 | 567 |
| Base content per 1 kb (bases) | 457 | 543 | 255 | 203 | 207 | 335 |
| Base content (%) | 45.7% | 54.3% | ||||
| ATP6 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 305 | 379 | 216 | 89 | 191 | 188 |
| Base content per 1 kb (bases) | 446 | 554 | 316 | 130 | 279 | 275 |
| Base content (%) | 44.6% | 55.4% | ||||
| ATP8 (size: 168 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 76 | 92 | 56 | 20 | 36 | 56 |
| Base content per 1 kb (bases) | 452 | 548 | 333 | 119 | 214 | 333 |
| Base content (%) | 45.2% | 54.8% | ||||
| COX1 (size: 1551 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 711 | 840 | 425 | 286 | 443 | 397 |
| Base content per 1 kb (bases) | 458 | 542 | 274 | 184 | 286 | 256 |
| Base content (%) | 45.8% | 54.2% | ||||
| COX2 (size: 691 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 308 | 383 | 194 | 114 | 187 | 196 |
| Base content per 1 kb (bases) | 446 | 554 | 281 | 165 | 271 | 284 |
| Base content (%) | 44.6% | 55.4% | ||||
| COX3 (size: 786 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 363 | 423 | 236 | 127 | 210 | 213 |
| Base content per 1 kb (bases) | 462 | 538 | 300 | 162 | 267 | 271 |
| Base content (%) | 46.2% | 53.8% | ||||
| CYTB (size: 1141 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 528 | 613 | 355 | 173 | 331 | 282 |
| Base content per 1 kb (bases) | 463 | 537 | 311 | 152 | 290 | 247 |
| Base content (%) | 46.3% | 53.7% | ||||
| ND1 (size: 975 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 468 | 507 | 321 | 147 | 256 | 251 |
| Base content per 1 kb (bases) | 480 | 520 | 329 | 151 | 263 | 257 |
| Base content (%) | 48.0% | 52.0% | ||||
| ND2 (size: 1047 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 524 | 523 | 377 | 147 | 245 | 278 |
| Base content per 1 kb (bases) | 500 | 500 | 360 | 140 | 234 | 266 |
| Base content (%) | 50.0% | 50.0% | ||||
| ND3 (size: 351 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 181 | 170 | 123 | 58 | 87 | 83 |
| Base content per 1 kb (bases) | 516 | 484 | 350 | 165 | 248 | 236 |
| Base content (%) | 51.6% | 48.4% | ||||
| ND4 (size: 1381 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 645 | 736 | 433 | 212 | 361 | 375 |
| Base content per 1 kb (bases) | 467 | 533 | 314 | 154 | 261 | 272 |
| Base content (%) | 46.7% | 53.3% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 139 | 158 | 94 | 45 | 89 | 69 |
| Base content per 1 kb (bases) | 468 | 532 | 316 | 152 | 300 | 232 |
| Base content (%) | 46.8% | 53.2% | ||||
| ND5 (size: 1839 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 843 | 996 | 587 | 256 | 475 | 521 |
| Base content per 1 kb (bases) | 458 | 542 | 319 | 139 | 258 | 283 |
| Base content (%) | 45.8% | 54.2% | ||||
| ND6 (size: 522 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 230 | 292 | 162 | 68 | 94 | 198 |
| Base content per 1 kb (bases) | 441 | 559 | 310 | 130 | 180 | 379 |
| Base content (%) | 44.1% | 55.9% | ||||
| ATP6 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.41%) 
Alanine (Ala, A)
n = 18 (7.93%) 
Serine (Ser, S)
n = 8 (3.52%) 
Threonine (Thr, T)
n = 23 (10.13%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 15 (6.61%) 
Leucine (Leu, L)
n = 56 (24.67%) 
Isoleucine (Ile, I)
n = 14 (6.17%) 
Methionine (Met, M)
n = 10 (4.41%) 
Proline (Pro, P)
n = 17 (7.49%) 
Phenylalanine (Phe, F)
n = 14 (6.17%) 
Tyrosine (Tyr, Y)
n = 3 (1.32%) 
Tryptophan (Trp, W)
n = 5 (2.2%) 
Aspartic acid (Asp, D)
n = 1 (0.44%) 
Glutamic acid (Glu, E)
n = 6 (2.64%) 
Asparagine (Asn, N)
n = 9 (3.96%) 
Glutamine (Gln, Q)
n = 7 (3.08%) 
Histidine (His, H)
n = 4 (1.76%) 
Lysine (Lys, K)
n = 1 (0.44%) 
Arginine (Arg, R)
n = 6 (2.64%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 7 | 7 | 3 | 11 | 10 | 25 | 1 | 9 | 6 | 1 | 3 | 8 | 2 | 2 | 6 | 8 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 7 | 0 | 0 | 4 | 6 | 8 | 0 | 1 | 4 | 5 | 0 | 5 | 4 | 8 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 5 | 12 | 1 | 1 | 3 | 0 | 0 | 0 | 4 | 0 | 3 | 0 | 0 | 2 | 7 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 6 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 4 | 2 | 0 | 0 | 1 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 50 | 81 | 61 | 36 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 25 | 62 | 32 | 109 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 14 | 73 | 95 | 46 | ||||||||||||
| ATP8 (size: 168 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLNPAPWLAILVFSWLVFLIIIPPKVMAHSFPNEPTPQSTEKPKGEPWNWPWH* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.82%)
Alanine (Ala, A)
n = 3 (5.45%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 2 (3.64%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 3 (5.45%)
Leucine (Leu, L)
n = 5 (9.09%)
Isoleucine (Ile, I)
n = 4 (7.27%)
Methionine (Met, M)
n = 2 (3.64%)
Proline (Pro, P)
n = 11 (20.0%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 3 (5.45%)
Asparagine (Asn, N)
n = 3 (5.45%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 1 | 3 | 1 | 1 | 1 | 2 | 0 | 1 | 2 | 0 | 1 | 1 | 1 | 0 | 0 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 1 | 3 | 4 | 4 | 0 | 0 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 2 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 3 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 10 | 19 | 15 | 12 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 7 | 18 | 14 | 17 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 3 | 19 | 27 | 7 | ||||||||||||
| COX1 (size: 1551 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.91%)
Alanine (Ala, A)
n = 49 (9.5%)
Serine (Ser, S)
n = 29 (5.62%)
Threonine (Thr, T)
n = 36 (6.98%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 42 (8.14%)
Leucine (Leu, L)
n = 61 (11.82%)
Isoleucine (Ile, I)
n = 42 (8.14%)
Methionine (Met, M)
n = 24 (4.65%)
Proline (Pro, P)
n = 27 (5.23%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 14 (2.71%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 26 | 16 | 4 | 22 | 7 | 25 | 4 | 2 | 4 | 3 | 12 | 6 | 23 | 1 | 11 | 31 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 20 | 0 | 1 | 12 | 21 | 16 | 0 | 9 | 7 | 22 | 8 | 11 | 3 | 12 | 1 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 18 | 3 | 6 | 7 | 11 | 0 | 0 | 5 | 3 | 15 | 0 | 1 | 4 | 10 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 16 | 9 | 2 | 0 | 15 | 7 | 1 | 1 | 1 | 4 | 2 | 0 | 0 | 1 | 0 | 17 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 163 | 119 | 129 | 106 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 77 | 136 | 93 | 211 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 46 | 170 | 175 | 126 | ||||||||||||
| COX2 (size: 691 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 18 (7.86%)
Serine (Ser, S)
n = 17 (7.42%)
Threonine (Thr, T)
n = 8 (3.49%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 16 (6.99%)
Leucine (Leu, L)
n = 27 (11.79%)
Isoleucine (Ile, I)
n = 24 (10.48%)
Methionine (Met, M)
n = 10 (4.37%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 10 (4.37%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 14 (6.11%)
Glutamic acid (Glu, E)
n = 14 (6.11%)
Asparagine (Asn, N)
n = 5 (2.18%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.62%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 11 | 13 | 6 | 9 | 4 | 10 | 3 | 1 | 4 | 4 | 4 | 7 | 3 | 2 | 7 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 2 | 3 | 7 | 7 | 1 | 2 | 1 | 4 | 2 | 6 | 4 | 4 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 6 | 0 | 3 | 4 | 6 | 1 | 0 | 3 | 3 | 6 | 0 | 0 | 0 | 5 | 5 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 5 | 13 | 1 | 4 | 10 | 4 | 0 | 0 | 1 | 5 | 0 | 0 | 0 | 0 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 71 | 64 | 54 | 41 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 25 | 54 | 64 | 87 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 18 | 76 | 78 | 58 | ||||||||||||
| COX3 (size: 786 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.05%)
Alanine (Ala, A)
n = 23 (8.81%)
Serine (Ser, S)
n = 14 (5.36%)
Threonine (Thr, T)
n = 24 (9.2%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 17 (6.51%)
Leucine (Leu, L)
n = 31 (11.88%)
Isoleucine (Ile, I)
n = 13 (4.98%)
Methionine (Met, M)
n = 8 (3.07%)
Proline (Pro, P)
n = 12 (4.6%)
Phenylalanine (Phe, F)
n = 23 (8.81%)
Tyrosine (Tyr, Y)
n = 13 (4.98%)
Tryptophan (Trp, W)
n = 12 (4.6%)
Aspartic acid (Asp, D)
n = 6 (2.3%)
Glutamic acid (Glu, E)
n = 9 (3.45%)
Asparagine (Asn, N)
n = 2 (0.77%)
Glutamine (Gln, Q)
n = 7 (2.68%)
Histidine (His, H)
n = 16 (6.13%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 6 (2.3%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 6 | 7 | 5 | 5 | 5 | 16 | 1 | 4 | 7 | 0 | 5 | 8 | 3 | 1 | 5 | 18 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 2 | 5 | 10 | 8 | 0 | 4 | 5 | 11 | 1 | 5 | 3 | 4 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 15 | 1 | 6 | 2 | 3 | 0 | 0 | 3 | 3 | 10 | 0 | 0 | 0 | 2 | 6 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 9 | 0 | 1 | 5 | 2 | 0 | 0 | 1 | 5 | 0 | 0 | 0 | 1 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 76 | 68 | 52 | 66 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 44 | 70 | 56 | 92 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 7 | 98 | 105 | 52 | ||||||||||||
| CYTB (size: 1141 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 32 (8.44%)
Serine (Ser, S)
n = 25 (6.6%)
Threonine (Thr, T)
n = 21 (5.54%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 27 (7.12%)
Leucine (Leu, L)
n = 58 (15.3%)
Isoleucine (Ile, I)
n = 28 (7.39%)
Methionine (Met, M)
n = 9 (2.37%)
Proline (Pro, P)
n = 22 (5.8%)
Phenylalanine (Phe, F)
n = 34 (8.97%)
Tyrosine (Tyr, Y)
n = 13 (3.43%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 10 (2.64%)
Glutamic acid (Glu, E)
n = 7 (1.85%)
Asparagine (Asn, N)
n = 18 (4.75%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 11 (2.9%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 11 | 17 | 2 | 21 | 13 | 20 | 3 | 1 | 3 | 3 | 8 | 8 | 10 | 1 | 4 | 30 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 7 | 1 | 2 | 4 | 12 | 16 | 0 | 5 | 7 | 12 | 2 | 6 | 4 | 11 | 1 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 5 | 0 | 8 | 8 | 8 | 0 | 0 | 1 | 2 | 11 | 0 | 0 | 5 | 13 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 11 | 6 | 1 | 4 | 6 | 9 | 0 | 0 | 0 | 6 | 2 | 0 | 0 | 0 | 0 | 13 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 102 | 104 | 86 | 88 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 51 | 99 | 74 | 156 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 20 | 152 | 122 | 86 | ||||||||||||
| ND1 (size: 975 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 38 (11.73%)
Serine (Ser, S)
n = 18 (5.56%)
Threonine (Thr, T)
n = 20 (6.17%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 17 (5.25%)
Leucine (Leu, L)
n = 62 (19.14%)
Isoleucine (Ile, I)
n = 27 (8.33%)
Methionine (Met, M)
n = 10 (3.09%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 18 (5.56%)
Tyrosine (Tyr, Y)
n = 11 (3.4%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 12 (3.7%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 4 (1.23%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 17 | 10 | 6 | 10 | 18 | 20 | 7 | 7 | 6 | 1 | 2 | 8 | 6 | 1 | 6 | 12 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 0 | 6 | 19 | 12 | 1 | 2 | 7 | 6 | 3 | 4 | 10 | 10 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 11 | 5 | 2 | 4 | 5 | 7 | 0 | 0 | 2 | 3 | 8 | 0 | 0 | 3 | 9 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 9 | 2 | 0 | 4 | 7 | 0 | 0 | 0 | 6 | 2 | 0 | 0 | 1 | 0 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 88 | 98 | 78 | 61 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 36 | 98 | 57 | 134 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 23 | 125 | 116 | 61 | ||||||||||||
| ND2 (size: 1047 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.17%)
Alanine (Ala, A)
n = 40 (11.49%)
Serine (Ser, S)
n = 23 (6.61%)
Threonine (Thr, T)
n = 42 (12.07%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 11 (3.16%)
Leucine (Leu, L)
n = 76 (21.84%)
Isoleucine (Ile, I)
n = 21 (6.03%)
Methionine (Met, M)
n = 13 (3.74%)
Proline (Pro, P)
n = 22 (6.32%)
Phenylalanine (Phe, F)
n = 12 (3.45%)
Tyrosine (Tyr, Y)
n = 7 (2.01%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 2 (0.57%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 12 (3.45%)
Glutamine (Gln, Q)
n = 13 (3.74%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 8 | 13 | 6 | 15 | 22 | 26 | 11 | 2 | 11 | 2 | 3 | 2 | 4 | 2 | 4 | 8 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 7 | 0 | 0 | 3 | 24 | 11 | 2 | 5 | 6 | 3 | 4 | 5 | 8 | 8 | 1 | 10 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 18 | 14 | 0 | 1 | 7 | 9 | 1 | 0 | 5 | 1 | 6 | 1 | 0 | 2 | 10 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 4 | 1 | 1 | 1 | 8 | 1 | 0 | 1 | 3 | 0 | 0 | 0 | 1 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 76 | 120 | 102 | 51 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 38 | 122 | 56 | 133 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 33 | 135 | 120 | 61 | ||||||||||||
| ND3 (size: 1047 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.17%)
Alanine (Ala, A)
n = 40 (11.49%)
Serine (Ser, S)
n = 23 (6.61%)
Threonine (Thr, T)
n = 42 (12.07%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 11 (3.16%)
Leucine (Leu, L)
n = 76 (21.84%)
Isoleucine (Ile, I)
n = 21 (6.03%)
Methionine (Met, M)
n = 13 (3.74%)
Proline (Pro, P)
n = 22 (6.32%)
Phenylalanine (Phe, F)
n = 12 (3.45%)
Tyrosine (Tyr, Y)
n = 7 (2.01%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 2 (0.57%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 12 (3.45%)
Glutamine (Gln, Q)
n = 13 (3.74%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 8 | 13 | 6 | 15 | 22 | 26 | 11 | 2 | 11 | 2 | 3 | 2 | 4 | 2 | 4 | 8 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 7 | 0 | 0 | 3 | 24 | 11 | 2 | 5 | 6 | 3 | 4 | 5 | 8 | 8 | 1 | 10 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 18 | 14 | 0 | 1 | 7 | 9 | 1 | 0 | 5 | 1 | 6 | 1 | 0 | 2 | 10 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 4 | 1 | 1 | 1 | 8 | 1 | 0 | 1 | 3 | 0 | 0 | 0 | 1 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 76 | 120 | 102 | 51 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 38 | 122 | 56 | 133 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 33 | 135 | 120 | 61 | ||||||||||||
| ND4 (size: 1381 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 26 (5.66%)
Alanine (Ala, A)
n = 39 (8.5%)
Serine (Ser, S)
n = 30 (6.54%)
Threonine (Thr, T)
n = 43 (9.37%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 15 (3.27%)
Leucine (Leu, L)
n = 98 (21.35%)
Isoleucine (Ile, I)
n = 34 (7.41%)
Methionine (Met, M)
n = 25 (5.45%)
Proline (Pro, P)
n = 29 (6.32%)
Phenylalanine (Phe, F)
n = 15 (3.27%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 18 (3.92%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 12 (2.61%)
Asparagine (Asn, N)
n = 11 (2.4%)
Glutamine (Gln, Q)
n = 12 (2.61%)
Histidine (His, H)
n = 12 (2.61%)
Lysine (Lys, K)
n = 9 (1.96%)
Arginine (Arg, R)
n = 10 (2.18%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 15 | 19 | 10 | 21 | 26 | 26 | 11 | 14 | 11 | 1 | 5 | 2 | 7 | 1 | 6 | 9 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 15 | 1 | 3 | 3 | 19 | 17 | 0 | 2 | 7 | 12 | 5 | 8 | 12 | 9 | 0 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 15 | 19 | 2 | 4 | 7 | 7 | 1 | 2 | 9 | 4 | 10 | 5 | 0 | 5 | 6 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 8 | 4 | 1 | 3 | 9 | 0 | 1 | 1 | 6 | 2 | 0 | 0 | 0 | 0 | 13 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 96 | 147 | 133 | 84 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 69 | 130 | 74 | 187 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 47 | 156 | 168 | 89 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 11 (11.22%)
Serine (Ser, S)
n = 10 (10.2%)
Threonine (Thr, T)
n = 9 (9.18%)
Cysteine (Cys, C)
n = 2 (2.04%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 5 (5.1%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 8 (8.16%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 2 (2.04%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 1 | 1 | 3 | 3 | 5 | 7 | 2 | 3 | 2 | 1 | 2 | 0 | 0 | 0 | 4 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 1 | 1 | 4 | 4 | 3 | 0 | 1 | 2 | 2 | 0 | 1 | 2 | 0 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 1 | 0 | 1 | 1 | 5 | 0 | 1 | 2 | 1 | 0 | 1 | 2 | 0 | 2 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 3 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 22 | 30 | 21 | 26 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 15 | 30 | 15 | 39 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 8 | 34 | 33 | 24 | ||||||||||||
| ND5 (size: 1839 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 30 (4.9%)
Alanine (Ala, A)
n = 58 (9.48%)
Serine (Ser, S)
n = 44 (7.19%)
Threonine (Thr, T)
n = 59 (9.64%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 27 (4.41%)
Leucine (Leu, L)
n = 95 (15.52%)
Isoleucine (Ile, I)
n = 48 (7.84%)
Methionine (Met, M)
n = 30 (4.9%)
Proline (Pro, P)
n = 31 (5.07%)
Phenylalanine (Phe, F)
n = 42 (6.86%)
Tyrosine (Tyr, Y)
n = 10 (1.63%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 12 (1.96%)
Glutamic acid (Glu, E)
n = 12 (1.96%)
Asparagine (Asn, N)
n = 29 (4.74%)
Glutamine (Gln, Q)
n = 19 (3.1%)
Histidine (His, H)
n = 16 (2.61%)
Lysine (Lys, K)
n = 20 (3.27%)
Arginine (Arg, R)
n = 10 (1.63%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 23 | 25 | 16 | 22 | 20 | 41 | 5 | 6 | 13 | 6 | 8 | 8 | 10 | 1 | 11 | 31 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 14 | 1 | 5 | 12 | 28 | 16 | 2 | 2 | 12 | 11 | 5 | 11 | 11 | 8 | 1 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 30 | 22 | 2 | 7 | 10 | 14 | 0 | 1 | 12 | 4 | 6 | 4 | 1 | 6 | 23 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 14 | 9 | 3 | 5 | 7 | 20 | 0 | 2 | 2 | 6 | 0 | 0 | 0 | 1 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 139 | 164 | 199 | 111 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 73 | 179 | 119 | 242 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 44 | 244 | 203 | 122 | ||||||||||||
| ND6 (size: 522 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 24 (13.87%)
Alanine (Ala, A)
n = 18 (10.4%)
Serine (Ser, S)
n = 10 (5.78%)
Threonine (Thr, T)
n = 6 (3.47%)
Cysteine (Cys, C)
n = 3 (1.73%)
Valine (Val, V)
n = 27 (15.61%)
Leucine (Leu, L)
n = 29 (16.76%)
Isoleucine (Ile, I)
n = 4 (2.31%)
Methionine (Met, M)
n = 9 (5.2%)
Proline (Pro, P)
n = 6 (3.47%)
Phenylalanine (Phe, F)
n = 8 (4.62%)
Tyrosine (Tyr, Y)
n = 9 (5.2%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 3 (1.73%)
Glutamic acid (Glu, E)
n = 6 (3.47%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 4 (2.31%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 4 | 0 | 1 | 3 | 1 | 3 | 2 | 16 | 0 | 0 | 10 | 2 | 9 | 6 | 7 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 8 | 3 | 0 | 10 | 2 | 5 | 1 | 6 | 1 | 4 | 13 | 5 | 0 | 1 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 0 | 3 | 2 | 2 | 1 | 2 | 2 | 1 | 8 | 1 | 2 | 4 | 1 | 0 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 4 | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 3 | 1 | 0 | 0 | 0 | 1 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 78 | 20 | 23 | 53 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 39 | 37 | 21 | 77 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 45 | 11 | 50 | 68 | ||||||||||||
| Total protein-coding genes (size: 11433 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 240 (6.3%)
Alanine (Ala, A)
n = 357 (9.37%)
Serine (Ser, S)
n = 240 (6.3%)
Threonine (Thr, T)
n = 300 (7.88%)
Cysteine (Cys, C)
n = 24 (0.63%)
Valine (Val, V)
n = 225 (5.91%)
Leucine (Leu, L)
n = 647 (16.99%)
Isoleucine (Ile, I)
n = 268 (7.04%)
Methionine (Met, M)
n = 157 (4.12%)
Proline (Pro, P)
n = 227 (5.96%)
Phenylalanine (Phe, F)
n = 237 (6.22%)
Tyrosine (Tyr, Y)
n = 110 (2.89%)
Tryptophan (Trp, W)
n = 120 (3.15%)
Aspartic acid (Asp, D)
n = 76 (2.0%)
Glutamic acid (Glu, E)
n = 105 (2.76%)
Asparagine (Asn, N)
n = 118 (3.1%)
Glutamine (Gln, Q)
n = 94 (2.47%)
Histidine (His, H)
n = 107 (2.81%)
Lysine (Lys, K)
n = 73 (1.92%)
Arginine (Arg, R)
n = 75 (1.97%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 132 | 136 | 64 | 145 | 140 | 233 | 52 | 68 | 71 | 23 | 63 | 63 | 79 | 20 | 73 | 164 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 93 | 7 | 17 | 68 | 161 | 121 | 7 | 39 | 61 | 95 | 45 | 70 | 68 | 84 | 5 | 49 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 113 | 123 | 15 | 43 | 61 | 76 | 5 | 7 | 48 | 32 | 78 | 14 | 9 | 29 | 89 | 28 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 79 | 88 | 17 | 19 | 57 | 71 | 2 | 5 | 8 | 51 | 11 | 0 | 0 | 9 | 1 | 106 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 1003 | 1073 | 971 | 763 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 514 | 1069 | 693 | 1534 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 319 | 1343 | 1339 | 809 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​T​h​u​n​n​u​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ t​h​y​n​n​u​s​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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