Viewing data for Panthera onca


Scientific name Panthera onca
Common name Jaguar
Maximum lifespan 28.00 years (Panthera onca@AnAge)

Total mtDNA (size: 17049 bases) GC AT G C A T
Base content (bases) 6975 10074 4509 2466 4627 5447
Base content per 1 kb (bases) 409 591 264 145 271 319
Base content (%) 40.9% 59.1%
Total protein-coding genes (size: 11342 bases) GC AT G C A T
Base content (bases) 4743 6599 3217 1526 3132 3467
Base content per 1 kb (bases) 418 582 284 135 276 306
Base content (%) 41.8% 58.2%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1499 bases) GC AT G C A T
Base content (bases) 550 949 315 235 428 521
Base content per 1 kb (bases) 367 633 210 157 286 348
Base content (%) 36.7% 63.3%
Total rRNA-coding genes (size: 2535 bases) GC AT G C A T
Base content (bases) 1026 1509 560 466 592 917
Base content per 1 kb (bases) 405 595 221 184 234 362
Base content (%) 40.5% 59.5%
12S rRNA gene (size: 960 bases) GC AT G C A T
Base content (bases) 400 560 222 178 220 340
Base content per 1 kb (bases) 417 583 231 185 229 354
Base content (%) 41.7% 58.3%
16S rRNA gene (size: 1575 bases) GC AT G C A T
Base content (bases) 626 949 338 288 372 577
Base content per 1 kb (bases) 397 603 215 183 236 366
Base content (%) 39.7% 60.3%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 283 398 198 85 198 200
Base content per 1 kb (bases) 416 584 291 125 291 294
Base content (%) 41.6% 58.4%
ATP8 (size: 204 bases) GC AT G C A T
Base content (bases) 63 141 48 15 59 82
Base content per 1 kb (bases) 309 691 235 74 289 402
Base content (%) 30.9% 69.1%
COX1 (size: 1545 bases) GC AT G C A T
Base content (bases) 649 896 364 285 485 411
Base content per 1 kb (bases) 420 580 236 184 314 266
Base content (%) 42.0% 58.0%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 285 399 184 101 183 216
Base content per 1 kb (bases) 417 583 269 148 268 316
Base content (%) 41.7% 58.3%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 354 430 221 133 225 205
Base content per 1 kb (bases) 452 548 282 170 287 261
Base content (%) 45.2% 54.8%
CYTB (size: 1140 bases) GC AT G C A T
Base content (bases) 506 634 346 160 314 320
Base content per 1 kb (bases) 444 556 304 140 275 281
Base content (%) 44.4% 55.6%
ND1 (size: 956 bases) GC AT G C A T
Base content (bases) 427 529 305 122 246 283
Base content per 1 kb (bases) 447 553 319 128 257 296
Base content (%) 44.7% 55.3%
ND2 (size: 1048 bases) GC AT G C A T
Base content (bases) 406 642 307 99 263 379
Base content per 1 kb (bases) 387 613 293 94 251 362
Base content (%) 38.7% 61.3%
ND3 (size: 347 bases) GC AT G C A T
Base content (bases) 141 206 97 44 100 106
Base content per 1 kb (bases) 406 594 280 127 288 305
Base content (%) 40.6% 59.4%
ND4 (size: 1375 bases) GC AT G C A T
Base content (bases) 569 806 399 170 377 429
Base content per 1 kb (bases) 414 586 290 124 274 312
Base content (%) 41.4% 58.6%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 122 175 80 42 91 84
Base content per 1 kb (bases) 411 589 269 141 306 283
Base content (%) 41.1% 58.9%
ND5 (size: 1821 bases) GC AT G C A T
Base content (bases) 750 1071 528 222 502 569
Base content per 1 kb (bases) 412 588 290 122 276 312
Base content (%) 41.2% 58.8%
ND6 (size: 528 bases) GC AT G C A T
Base content (bases) 211 317 157 54 108 209
Base content per 1 kb (bases) 400 600 297 102 205 396
Base content (%) 40.0% 60.0%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.87%)
Alanine (Ala, A)
n = 17 (7.52%)
Serine (Ser, S)
n = 15 (6.64%)
Threonine (Thr, T)
n = 22 (9.73%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (4.42%)
Leucine (Leu, L)
n = 43 (19.03%)
Isoleucine (Ile, I)
n = 26 (11.5%)
Methionine (Met, M)
n = 13 (5.75%)
Proline (Pro, P)
n = 13 (5.75%)
Phenylalanine (Phe, F)
n = 12 (5.31%)
Tyrosine (Tyr, Y)
n = 2 (0.88%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 10 (4.42%)
Glutamine (Gln, Q)
n = 9 (3.98%)
Histidine (His, H)
n = 8 (3.54%)
Lysine (Lys, K)
n = 4 (1.77%)
Arginine (Arg, R)
n = 4 (1.77%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 8 10 6 3 18 7 8 8 1 0 3 6 1 5 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 8 7 1 1 0 3 5 3 0 9 3 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 6 0 3 1 5 1 3 2 2 0 1 1 2 8 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 3 0 0 1 4 0 1 1 2 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
42 68 80 37
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
23 62 38 104
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 68 82 57
ATP8 (size: 204 bases)
Amino acid sequence: MPQLDTSTWFITIVSMIMTLFIMFQLKISKHLYPSSPEPKSMAALKQLNPWEKKWTKIYSPLSLPQQ*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 2 (2.99%)
Serine (Ser, S)
n = 8 (11.94%)
Threonine (Thr, T)
n = 5 (7.46%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.49%)
Leucine (Leu, L)
n = 8 (11.94%)
Isoleucine (Ile, I)
n = 6 (8.96%)
Methionine (Met, M)
n = 5 (7.46%)
Proline (Pro, P)
n = 7 (10.45%)
Phenylalanine (Phe, F)
n = 3 (4.48%)
Tyrosine (Tyr, Y)
n = 2 (2.99%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 1 (1.49%)
Glutamic acid (Glu, E)
n = 2 (2.99%)
Asparagine (Asn, N)
n = 1 (1.49%)
Glutamine (Gln, Q)
n = 5 (7.46%)
Histidine (His, H)
n = 1 (1.49%)
Lysine (Lys, K)
n = 7 (10.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 2 4 2 0 4 1 1 4 1 1 0 0 0 3 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 1 0 1 0 0 0 0 0 2 2 3 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 2 1 1 0 6 0 0 1 2 0 0 0 1 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 1 1 0 7 0 0 0 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
6 20 25 17
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
4 21 20 23
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 7 37 19
COX1 (size: 1545 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.14%)
Alanine (Ala, A)
n = 41 (7.98%)
Serine (Ser, S)
n = 32 (6.23%)
Threonine (Thr, T)
n = 38 (7.39%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 39 (7.59%)
Leucine (Leu, L)
n = 59 (11.48%)
Isoleucine (Ile, I)
n = 34 (6.61%)
Methionine (Met, M)
n = 34 (6.61%)
Proline (Pro, P)
n = 29 (5.64%)
Phenylalanine (Phe, F)
n = 41 (7.98%)
Tyrosine (Tyr, Y)
n = 19 (3.7%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 15 (2.92%)
Glutamic acid (Glu, E)
n = 10 (1.95%)
Asparagine (Asn, N)
n = 17 (3.31%)
Glutamine (Gln, Q)
n = 6 (1.17%)
Histidine (His, H)
n = 17 (3.31%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 9 (1.75%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 10 20 7 6 23 8 11 5 1 6 9 17 7 24 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
14 1 0 15 11 15 0 8 11 20 8 11 9 7 2 14
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 13 3 5 7 16 1 1 2 9 10 5 4 12 5 8
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 8 2 8 7 8 1 2 1 6 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
152 105 135 123
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 137 94 207
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
56 122 182 155
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.96%)
Alanine (Ala, A)
n = 9 (3.96%)
Serine (Ser, S)
n = 21 (9.25%)
Threonine (Thr, T)
n = 18 (7.93%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 14 (6.17%)
Leucine (Leu, L)
n = 34 (14.98%)
Isoleucine (Ile, I)
n = 19 (8.37%)
Methionine (Met, M)
n = 12 (5.29%)
Proline (Pro, P)
n = 13 (5.73%)
Phenylalanine (Phe, F)
n = 7 (3.08%)
Tyrosine (Tyr, Y)
n = 11 (4.85%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 10 (4.41%)
Glutamic acid (Glu, E)
n = 14 (6.17%)
Asparagine (Asn, N)
n = 4 (1.76%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 7 (3.08%)
Lysine (Lys, K)
n = 5 (2.2%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 8 8 3 5 18 2 6 7 0 1 4 7 2 4 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 1 3 3 2 1 2 4 3 0 1 7 5 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 7 1 2 6 6 1 1 5 8 3 1 0 1 3 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 11 3 5 5 3 2 0 1 5 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
56 61 64 47
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
28 55 59 86
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 68 93 50
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 15 (5.77%)
Serine (Ser, S)
n = 22 (8.46%)
Threonine (Thr, T)
n = 23 (8.85%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 14 (5.38%)
Leucine (Leu, L)
n = 33 (12.69%)
Isoleucine (Ile, I)
n = 16 (6.15%)
Methionine (Met, M)
n = 10 (3.85%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 22 (8.46%)
Tyrosine (Tyr, Y)
n = 13 (5.0%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 8 7 5 4 11 8 4 6 1 5 2 5 2 7 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 2 5 7 3 0 3 3 13 1 0 5 7 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 9 1 2 6 4 4 4 2 7 6 5 1 1 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 8 0 2 1 2 1 1 2 1 1 0 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
60 68 63 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
45 66 55 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
28 87 87 59
CYTB (size: 1140 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 23 (6.07%)
Serine (Ser, S)
n = 27 (7.12%)
Threonine (Thr, T)
n = 24 (6.33%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 19 (5.01%)
Leucine (Leu, L)
n = 58 (15.3%)
Isoleucine (Ile, I)
n = 40 (10.55%)
Methionine (Met, M)
n = 14 (3.69%)
Proline (Pro, P)
n = 22 (5.8%)
Phenylalanine (Phe, F)
n = 25 (6.6%)
Tyrosine (Tyr, Y)
n = 15 (3.96%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 16 (4.22%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 13 (3.43%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 9 (2.37%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 30 11 8 9 28 5 8 6 0 2 5 10 2 7 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 3 6 9 7 1 2 9 13 2 4 10 8 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 8 1 5 8 12 1 0 1 5 10 3 0 8 8 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 4 2 4 7 7 2 0 2 7 0 1 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
85 100 105 90
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 95 76 156
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 151 139 68
ND1 (size: 956 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.79%)
Alanine (Ala, A)
n = 29 (9.15%)
Serine (Ser, S)
n = 20 (6.31%)
Threonine (Thr, T)
n = 27 (8.52%)
Cysteine (Cys, C)
n = 1 (0.32%)
Valine (Val, V)
n = 15 (4.73%)
Leucine (Leu, L)
n = 54 (17.03%)
Isoleucine (Ile, I)
n = 26 (8.2%)
Methionine (Met, M)
n = 21 (6.62%)
Proline (Pro, P)
n = 22 (6.94%)
Phenylalanine (Phe, F)
n = 21 (6.62%)
Tyrosine (Tyr, Y)
n = 12 (3.79%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.95%)
Glutamic acid (Glu, E)
n = 11 (3.47%)
Asparagine (Asn, N)
n = 11 (3.47%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 3 (0.95%)
Lysine (Lys, K)
n = 7 (2.21%)
Arginine (Arg, R)
n = 8 (2.52%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 15 19 3 14 26 7 4 6 0 3 5 7 0 9 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 1 18 10 0 2 1 8 1 3 10 6 3 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 13 0 3 7 6 0 0 4 3 9 1 0 1 10 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 7 4 0 3 7 0 1 1 6 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 89 96 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 94 53 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 122 133 45
ND2 (size: 1048 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.6%)
Alanine (Ala, A)
n = 21 (6.03%)
Serine (Ser, S)
n = 26 (7.47%)
Threonine (Thr, T)
n = 37 (10.63%)
Cysteine (Cys, C)
n = 2 (0.57%)
Valine (Val, V)
n = 10 (2.87%)
Leucine (Leu, L)
n = 51 (14.66%)
Isoleucine (Ile, I)
n = 38 (10.92%)
Methionine (Met, M)
n = 41 (11.78%)
Proline (Pro, P)
n = 23 (6.61%)
Phenylalanine (Phe, F)
n = 11 (3.16%)
Tyrosine (Tyr, Y)
n = 9 (2.59%)
Tryptophan (Trp, W)
n = 10 (2.87%)
Aspartic acid (Asp, D)
n = 2 (0.57%)
Glutamic acid (Glu, E)
n = 6 (1.72%)
Asparagine (Asn, N)
n = 14 (4.02%)
Glutamine (Gln, Q)
n = 9 (2.59%)
Histidine (His, H)
n = 5 (1.44%)
Lysine (Lys, K)
n = 14 (4.02%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 25 39 5 8 27 5 6 8 1 3 2 4 1 2 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 3 9 9 0 0 7 8 1 2 14 7 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 19 1 2 9 14 0 0 1 5 4 0 0 2 12 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 6 0 2 0 14 0 0 0 4 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
55 86 145 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 106 59 151
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 115 175 48
ND3 (size: 1048 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.6%)
Alanine (Ala, A)
n = 21 (6.03%)
Serine (Ser, S)
n = 26 (7.47%)
Threonine (Thr, T)
n = 37 (10.63%)
Cysteine (Cys, C)
n = 2 (0.57%)
Valine (Val, V)
n = 10 (2.87%)
Leucine (Leu, L)
n = 51 (14.66%)
Isoleucine (Ile, I)
n = 38 (10.92%)
Methionine (Met, M)
n = 41 (11.78%)
Proline (Pro, P)
n = 23 (6.61%)
Phenylalanine (Phe, F)
n = 11 (3.16%)
Tyrosine (Tyr, Y)
n = 9 (2.59%)
Tryptophan (Trp, W)
n = 10 (2.87%)
Aspartic acid (Asp, D)
n = 2 (0.57%)
Glutamic acid (Glu, E)
n = 6 (1.72%)
Asparagine (Asn, N)
n = 14 (4.02%)
Glutamine (Gln, Q)
n = 9 (2.59%)
Histidine (His, H)
n = 5 (1.44%)
Lysine (Lys, K)
n = 14 (4.02%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 25 39 5 8 27 5 6 8 1 3 2 4 1 2 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 3 9 9 0 0 7 8 1 2 14 7 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 19 1 2 9 14 0 0 1 5 4 0 0 2 12 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 6 0 2 0 14 0 0 0 4 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
55 86 145 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 106 59 151
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 115 175 48
ND4 (size: 1375 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.94%)
Alanine (Ala, A)
n = 35 (7.66%)
Serine (Ser, S)
n = 36 (7.88%)
Threonine (Thr, T)
n = 41 (8.97%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 17 (3.72%)
Leucine (Leu, L)
n = 95 (20.79%)
Isoleucine (Ile, I)
n = 42 (9.19%)
Methionine (Met, M)
n = 29 (6.35%)
Proline (Pro, P)
n = 22 (4.81%)
Phenylalanine (Phe, F)
n = 14 (3.06%)
Tyrosine (Tyr, Y)
n = 17 (3.72%)
Tryptophan (Trp, W)
n = 13 (2.84%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 8 (1.75%)
Asparagine (Asn, N)
n = 22 (4.81%)
Glutamine (Gln, Q)
n = 11 (2.41%)
Histidine (His, H)
n = 9 (1.97%)
Lysine (Lys, K)
n = 13 (2.84%)
Arginine (Arg, R)
n = 10 (2.19%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 21 23 12 19 36 11 15 9 2 2 3 11 1 6 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 2 6 19 9 1 3 6 6 3 6 9 5 2 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 22 2 4 6 16 0 4 6 7 10 1 2 6 16 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 6 2 0 3 11 2 1 1 8 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 130 157 90
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 124 83 197
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
35 145 189 89
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 7 (7.14%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 5 (5.1%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 6 (6.12%)
Leucine (Leu, L)
n = 21 (21.43%)
Isoleucine (Ile, I)
n = 7 (7.14%)
Methionine (Met, M)
n = 12 (12.24%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 4 (4.08%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 6 (6.12%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 2 (2.04%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 5 6 1 4 10 4 2 2 0 0 1 4 1 2 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 2 2 1 3 1 0 3 1 0 1 0 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 2 0 1 5 2 0 0 1 3 1 0 0 3 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 1 1 0 1 0 0 0 0 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
20 25 31 23
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
9 21 18 51
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 34 35 17
ND5 (size: 1821 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (4.62%)
Alanine (Ala, A)
n = 43 (7.1%)
Serine (Ser, S)
n = 50 (8.25%)
Threonine (Thr, T)
n = 53 (8.75%)
Cysteine (Cys, C)
n = 4 (0.66%)
Valine (Val, V)
n = 18 (2.97%)
Leucine (Leu, L)
n = 91 (15.02%)
Isoleucine (Ile, I)
n = 59 (9.74%)
Methionine (Met, M)
n = 34 (5.61%)
Proline (Pro, P)
n = 26 (4.29%)
Phenylalanine (Phe, F)
n = 45 (7.43%)
Tyrosine (Tyr, Y)
n = 21 (3.47%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 11 (1.82%)
Glutamic acid (Glu, E)
n = 12 (1.98%)
Asparagine (Asn, N)
n = 31 (5.12%)
Glutamine (Gln, Q)
n = 20 (3.3%)
Histidine (His, H)
n = 15 (2.48%)
Lysine (Lys, K)
n = 24 (3.96%)
Arginine (Arg, R)
n = 9 (1.49%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
17 42 33 11 21 34 7 16 16 4 6 2 9 1 22 23
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 2 2 5 20 16 2 3 7 14 4 3 10 10 3 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
22 19 3 8 13 13 3 6 7 8 13 2 2 12 19 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 7 5 2 9 17 7 1 3 5 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
112 143 214 138
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
66 159 135 247
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
44 226 220 117
ND6 (size: 528 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (13.71%)
Alanine (Ala, A)
n = 13 (7.43%)
Serine (Ser, S)
n = 12 (6.86%)
Threonine (Thr, T)
n = 12 (6.86%)
Cysteine (Cys, C)
n = 2 (1.14%)
Valine (Val, V)
n = 21 (12.0%)
Leucine (Leu, L)
n = 18 (10.29%)
Isoleucine (Ile, I)
n = 13 (7.43%)
Methionine (Met, M)
n = 7 (4.0%)
Proline (Pro, P)
n = 4 (2.29%)
Phenylalanine (Phe, F)
n = 14 (8.0%)
Tyrosine (Tyr, Y)
n = 9 (5.14%)
Tryptophan (Trp, W)
n = 4 (2.29%)
Aspartic acid (Asp, D)
n = 4 (2.29%)
Glutamic acid (Glu, E)
n = 9 (5.14%)
Asparagine (Asn, N)
n = 4 (2.29%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 4 (2.29%)
Arginine (Arg, R)
n = 1 (0.57%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 1 2 2 0 1 2 6 0 0 5 1 3 12 14 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 1 6 1 5 1 14 0 3 7 4 0 0 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 5 2 3 1 2 1 4 1 8 1 3 7 3 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 7 4 0 1 3 1 0 0 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 10 45 50
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
36 36 31 73
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
50 8 32 86
Total protein-coding genes (size: 11410 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 218 (5.74%)
Alanine (Ala, A)
n = 267 (7.03%)
Serine (Ser, S)
n = 286 (7.53%)
Threonine (Thr, T)
n = 314 (8.26%)
Cysteine (Cys, C)
n = 25 (0.66%)
Valine (Val, V)
n = 187 (4.92%)
Leucine (Leu, L)
n = 592 (15.58%)
Isoleucine (Ile, I)
n = 330 (8.68%)
Methionine (Met, M)
n = 239 (6.29%)
Proline (Pro, P)
n = 200 (5.26%)
Phenylalanine (Phe, F)
n = 228 (6.0%)
Tyrosine (Tyr, Y)
n = 137 (3.61%)
Tryptophan (Trp, W)
n = 104 (2.74%)
Aspartic acid (Asp, D)
n = 67 (1.76%)
Glutamic acid (Glu, E)
n = 97 (2.55%)
Asparagine (Asn, N)
n = 145 (3.82%)
Glutamine (Gln, Q)
n = 91 (2.39%)
Histidine (His, H)
n = 96 (2.53%)
Lysine (Lys, K)
n = 103 (2.71%)
Arginine (Arg, R)
n = 67 (1.76%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
154 176 188 69 97 249 69 90 80 11 34 37 86 30 109 119
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
51 10 15 62 110 86 9 37 54 97 30 40 88 61 11 72
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
99 128 15 41 71 104 12 24 34 68 69 23 18 54 91 24
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
72 69 28 28 39 85 18 8 13 45 1 1 0 7 0 81
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
836 938 1190 837
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
473 1009 743 1576
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
326 1184 1457 834 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​a​n​t​h​e​r​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ o​n​c​a​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.