Viewing data for Rachycentron canadum


Scientific name Rachycentron canadum
Common name Cobia
Maximum lifespan 15.00 years (Rachycentron canadum@AnAge)

Total mtDNA (size: 16758 bases) GC AT G C A T
Base content (bases) 7184 9571 4571 2613 4661 4910
Base content per 1 kb (bases) 429 571 273 156 278 293
Base content (%) 42.9% 57.1%
Total protein-coding genes (size: 11402 bases) GC AT G C A T
Base content (bases) 4931 6471 3307 1624 3289 3182
Base content per 1 kb (bases) 432 568 290 142 288 279
Base content (%) 43.2% 56.8%
D-loop (size: 1068 bases) GC AT G C A T
Base content (bases) 399 669 246 153 330 339
Base content per 1 kb (bases) 374 626 230 143 309 317
Base content (%) 37.4% 62.6%
Total tRNA-coding genes (size: 1555 bases) GC AT G C A T
Base content (bases) 646 909 358 288 422 487
Base content per 1 kb (bases) 415 585 230 185 271 313
Base content (%) 41.5% 58.5%
Total rRNA-coding genes (size: 2644 bases) GC AT G C A T
Base content (bases) 1170 1471 632 538 598 873
Base content per 1 kb (bases) 443 556 239 203 226 330
Base content (%) 44.3% 55.6%
12S rRNA gene (size: 928 bases) GC AT G C A T
Base content (bases) 443 485 236 207 210 275
Base content per 1 kb (bases) 477 523 254 223 226 296
Base content (%) 47.7% 52.3%
16S rRNA gene (size: 1716 bases) GC AT G C A T
Base content (bases) 727 986 396 331 388 598
Base content per 1 kb (bases) 424 575 231 193 226 348
Base content (%) 42.4% 57.5%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 277 407 186 91 210 197
Base content per 1 kb (bases) 405 595 272 133 307 288
Base content (%) 40.5% 59.5%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 58 110 43 15 51 59
Base content per 1 kb (bases) 345 655 256 89 304 351
Base content (%) 34.5% 65.5%
COX1 (size: 1554 bases) GC AT G C A T
Base content (bases) 683 871 403 280 472 399
Base content per 1 kb (bases) 440 560 259 180 304 257
Base content (%) 44.0% 56.0%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 298 393 189 109 200 193
Base content per 1 kb (bases) 431 569 274 158 289 279
Base content (%) 43.1% 56.9%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 343 442 213 130 223 219
Base content per 1 kb (bases) 437 563 271 166 284 279
Base content (%) 43.7% 56.3%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 496 645 331 165 362 283
Base content per 1 kb (bases) 435 565 290 145 317 248
Base content (%) 43.5% 56.5%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 423 552 288 135 281 271
Base content per 1 kb (bases) 434 566 295 138 288 278
Base content (%) 43.4% 56.6%
ND2 (size: 1045 bases) GC AT G C A T
Base content (bases) 444 601 320 124 288 313
Base content per 1 kb (bases) 425 575 306 119 276 300
Base content (%) 42.5% 57.5%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 153 196 100 53 114 82
Base content per 1 kb (bases) 438 562 287 152 327 235
Base content (%) 43.8% 56.2%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 578 803 399 179 416 387
Base content per 1 kb (bases) 419 581 289 130 301 280
Base content (%) 41.9% 58.1%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 150 147 103 47 86 61
Base content per 1 kb (bases) 505 495 347 158 290 205
Base content (%) 50.5% 49.5%
ND5 (size: 1833 bases) GC AT G C A T
Base content (bases) 802 1031 556 246 517 514
Base content per 1 kb (bases) 438 562 303 134 282 280
Base content (%) 43.8% 56.2%
ND6 (size: 543 bases) GC AT G C A T
Base content (bases) 243 300 187 56 81 219
Base content per 1 kb (bases) 448 552 344 103 149 403
Base content (%) 44.8% 55.2%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 24 (10.57%)
Serine (Ser, S)
n = 8 (3.52%)
Threonine (Thr, T)
n = 20 (8.81%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (6.17%)
Leucine (Leu, L)
n = 53 (23.35%)
Isoleucine (Ile, I)
n = 16 (7.05%)
Methionine (Met, M)
n = 9 (3.96%)
Proline (Pro, P)
n = 17 (7.49%)
Phenylalanine (Phe, F)
n = 12 (5.29%)
Tyrosine (Tyr, Y)
n = 4 (1.76%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 11 (4.85%)
Histidine (His, H)
n = 4 (1.76%)
Lysine (Lys, K)
n = 3 (1.32%)
Arginine (Arg, R)
n = 4 (1.76%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 3 6 10 4 14 3 21 9 2 4 2 6 2 9 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 6 11 7 0 1 4 4 2 6 6 5 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 14 1 1 3 1 0 0 3 0 4 1 1 3 5 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 4 0 0 1 3 0 0 0 4 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
54 67 59 48
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
22 66 36 104
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 53 102 58
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPSPWFMILCLTWFTFLIFLAPKILAHTFPNEPVTMDNQKSTMNSWNWPWH*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 2 (3.64%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 5 (9.09%)
Cysteine (Cys, C)
n = 1 (1.82%)
Valine (Val, V)
n = 1 (1.82%)
Leucine (Leu, L)
n = 6 (10.91%)
Isoleucine (Ile, I)
n = 3 (5.45%)
Methionine (Met, M)
n = 4 (7.27%)
Proline (Pro, P)
n = 7 (12.73%)
Phenylalanine (Phe, F)
n = 5 (9.09%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 1 (1.82%)
Glutamic acid (Glu, E)
n = 1 (1.82%)
Asparagine (Asn, N)
n = 5 (9.09%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 2 (3.64%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 2 4 0 1 1 0 4 2 0 0 0 1 0 5 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
0 1 0 0 1 1 0 0 0 0 0 1 3 3 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 3 0 0 1 2 0 0 0 0 0 1 0 1 4 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 0 1 1 0 1 1 0 0 0 0 0 0 0 1 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
5 13 19 19
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 17 14 19
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 13 26 13
COX1 (size: 1554 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 48 (9.28%)
Alanine (Ala, A)
n = 42 (8.12%)
Serine (Ser, S)
n = 28 (5.42%)
Threonine (Thr, T)
n = 43 (8.32%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 43 (8.32%)
Leucine (Leu, L)
n = 63 (12.19%)
Isoleucine (Ile, I)
n = 36 (6.96%)
Methionine (Met, M)
n = 25 (4.84%)
Proline (Pro, P)
n = 28 (5.42%)
Phenylalanine (Phe, F)
n = 41 (7.93%)
Tyrosine (Tyr, Y)
n = 19 (3.68%)
Tryptophan (Trp, W)
n = 16 (3.09%)
Aspartic acid (Asp, D)
n = 16 (3.09%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 15 (2.9%)
Glutamine (Gln, Q)
n = 5 (0.97%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 9 (1.74%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
25 11 16 16 11 20 7 8 5 0 13 8 19 3 20 21
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 0 1 12 17 12 1 7 14 16 11 10 7 11 0 13
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 20 2 12 4 7 0 2 3 7 12 5 1 8 7 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 10 1 3 13 9 0 2 1 6 0 1 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
160 115 134 109
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
80 136 94 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
40 152 171 155
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.49%)
Alanine (Ala, A)
n = 17 (7.42%)
Serine (Ser, S)
n = 18 (7.86%)
Threonine (Thr, T)
n = 14 (6.11%)
Cysteine (Cys, C)
n = 3 (1.31%)
Valine (Val, V)
n = 21 (9.17%)
Leucine (Leu, L)
n = 27 (11.79%)
Isoleucine (Ile, I)
n = 15 (6.55%)
Methionine (Met, M)
n = 10 (4.37%)
Proline (Pro, P)
n = 13 (5.68%)
Phenylalanine (Phe, F)
n = 10 (4.37%)
Tyrosine (Tyr, Y)
n = 10 (4.37%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 11 (4.8%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 4 (1.75%)
Glutamine (Gln, Q)
n = 10 (4.37%)
Histidine (His, H)
n = 9 (3.93%)
Lysine (Lys, K)
n = 3 (1.31%)
Arginine (Arg, R)
n = 7 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 5 6 10 3 8 4 2 9 1 6 5 10 0 6 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 2 4 5 8 0 4 4 0 0 4 2 7 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 3 0 5 6 5 0 1 1 4 6 0 0 1 3 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 12 3 4 7 3 0 2 0 5 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 64 48 46
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 60 62 83
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 65 83 70
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 22 (8.46%)
Serine (Ser, S)
n = 11 (4.23%)
Threonine (Thr, T)
n = 24 (9.23%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 18 (6.92%)
Leucine (Leu, L)
n = 31 (11.92%)
Isoleucine (Ile, I)
n = 18 (6.92%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 10 (3.85%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 9 (3.46%)
Asparagine (Asn, N)
n = 3 (1.15%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 6 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 9 5 7 3 13 1 7 9 0 4 6 6 2 11 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 6 7 9 0 1 3 11 5 3 7 2 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 12 1 2 3 3 0 0 3 3 7 1 0 3 0 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 8 1 2 3 3 0 0 1 5 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 67 59 61
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 66 55 98
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 80 104 63
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (7.39%)
Alanine (Ala, A)
n = 28 (7.39%)
Serine (Ser, S)
n = 22 (5.8%)
Threonine (Thr, T)
n = 26 (6.86%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 21 (5.54%)
Leucine (Leu, L)
n = 69 (18.21%)
Isoleucine (Ile, I)
n = 27 (7.12%)
Methionine (Met, M)
n = 12 (3.17%)
Proline (Pro, P)
n = 22 (5.8%)
Phenylalanine (Phe, F)
n = 27 (7.12%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 16 (4.22%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 12 10 28 14 13 2 11 6 0 9 7 4 1 11 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 3 0 10 12 6 0 2 14 8 4 7 6 9 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 12 2 5 6 9 0 0 2 6 8 3 1 7 9 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 4 2 4 7 9 0 0 2 6 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
94 105 92 89
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 96 74 156
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 130 117 116
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 32 (9.88%)
Serine (Ser, S)
n = 25 (7.72%)
Threonine (Thr, T)
n = 23 (7.1%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 11 (3.4%)
Leucine (Leu, L)
n = 62 (19.14%)
Isoleucine (Ile, I)
n = 28 (8.64%)
Methionine (Met, M)
n = 14 (4.32%)
Proline (Pro, P)
n = 20 (6.17%)
Phenylalanine (Phe, F)
n = 20 (6.17%)
Tyrosine (Tyr, Y)
n = 11 (3.4%)
Tryptophan (Trp, W)
n = 9 (2.78%)
Aspartic acid (Asp, D)
n = 3 (0.93%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 8 (2.47%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 5 (1.54%)
Lysine (Lys, K)
n = 8 (2.47%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 13 11 15 10 20 4 13 7 0 3 2 5 1 10 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 2 15 15 0 0 9 4 5 1 10 9 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 8 0 2 9 7 0 2 5 7 4 0 0 6 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 8 3 2 1 8 0 2 1 4 1 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 89 88 73
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 93 54 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 106 129 73
ND2 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.61%)
Alanine (Ala, A)
n = 35 (10.09%)
Serine (Ser, S)
n = 28 (8.07%)
Threonine (Thr, T)
n = 36 (10.37%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (2.31%)
Leucine (Leu, L)
n = 67 (19.31%)
Isoleucine (Ile, I)
n = 31 (8.93%)
Methionine (Met, M)
n = 16 (4.61%)
Proline (Pro, P)
n = 18 (5.19%)
Phenylalanine (Phe, F)
n = 17 (4.9%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 12 (3.46%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 12 (3.46%)
Glutamine (Gln, Q)
n = 12 (3.46%)
Histidine (His, H)
n = 10 (2.88%)
Lysine (Lys, K)
n = 10 (2.88%)
Arginine (Arg, R)
n = 5 (1.44%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 19 11 11 10 25 5 16 12 0 1 2 3 2 7 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 0 4 14 15 2 3 5 7 1 6 7 4 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 13 1 5 7 11 0 0 5 2 6 0 0 5 7 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 3 2 1 1 9 1 2 0 3 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
66 96 110 76
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 112 59 139
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 112 144 72
ND3 (size: 1045 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.61%)
Alanine (Ala, A)
n = 35 (10.09%)
Serine (Ser, S)
n = 28 (8.07%)
Threonine (Thr, T)
n = 36 (10.37%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 8 (2.31%)
Leucine (Leu, L)
n = 67 (19.31%)
Isoleucine (Ile, I)
n = 31 (8.93%)
Methionine (Met, M)
n = 16 (4.61%)
Proline (Pro, P)
n = 18 (5.19%)
Phenylalanine (Phe, F)
n = 17 (4.9%)
Tyrosine (Tyr, Y)
n = 8 (2.31%)
Tryptophan (Trp, W)
n = 12 (3.46%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 12 (3.46%)
Glutamine (Gln, Q)
n = 12 (3.46%)
Histidine (His, H)
n = 10 (2.88%)
Lysine (Lys, K)
n = 10 (2.88%)
Arginine (Arg, R)
n = 5 (1.44%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 19 11 11 10 25 5 16 12 0 1 2 3 2 7 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 0 4 14 15 2 3 5 7 1 6 7 4 1 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 13 1 5 7 11 0 0 5 2 6 0 0 5 7 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 3 2 1 1 9 1 2 0 3 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
66 96 110 76
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 112 59 139
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 112 144 72
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (4.36%)
Alanine (Ala, A)
n = 43 (9.37%)
Serine (Ser, S)
n = 28 (6.1%)
Threonine (Thr, T)
n = 43 (9.37%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 13 (2.83%)
Leucine (Leu, L)
n = 98 (21.35%)
Isoleucine (Ile, I)
n = 40 (8.71%)
Methionine (Met, M)
n = 26 (5.66%)
Proline (Pro, P)
n = 27 (5.88%)
Phenylalanine (Phe, F)
n = 19 (4.14%)
Tyrosine (Tyr, Y)
n = 13 (2.83%)
Tryptophan (Trp, W)
n = 16 (3.49%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 13 (2.83%)
Asparagine (Asn, N)
n = 12 (2.61%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 11 (2.4%)
Lysine (Lys, K)
n = 9 (1.96%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 17 17 18 21 32 2 24 7 3 7 2 4 0 14 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 1 3 13 17 13 0 2 6 8 4 5 11 11 0 16
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 14 1 2 8 6 2 1 9 6 7 1 1 7 5 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 13 0 2 2 7 2 1 6 4 0 0 0 0 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
93 132 140 95
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
61 131 72 196
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 136 175 124
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (7.14%)
Alanine (Ala, A)
n = 12 (12.24%)
Serine (Ser, S)
n = 11 (11.22%)
Threonine (Thr, T)
n = 5 (5.1%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 26 (26.53%)
Isoleucine (Ile, I)
n = 4 (4.08%)
Methionine (Met, M)
n = 4 (4.08%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 6 (6.12%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 3 (3.06%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 2 3 4 7 9 3 1 2 1 0 1 0 0 2 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 2 4 4 4 0 2 3 1 1 0 2 0 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 1 0 2 4 4 0 1 0 0 0 0 2 0 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 1 1 0 1 0 0 0 1 2 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
23 35 17 24
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
15 29 14 41
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 39 30 21
ND5 (size: 1833 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 29 (4.75%)
Alanine (Ala, A)
n = 51 (8.36%)
Serine (Ser, S)
n = 53 (8.69%)
Threonine (Thr, T)
n = 62 (10.16%)
Cysteine (Cys, C)
n = 9 (1.48%)
Valine (Val, V)
n = 26 (4.26%)
Leucine (Leu, L)
n = 91 (14.92%)
Isoleucine (Ile, I)
n = 50 (8.2%)
Methionine (Met, M)
n = 28 (4.59%)
Proline (Pro, P)
n = 32 (5.25%)
Phenylalanine (Phe, F)
n = 40 (6.56%)
Tyrosine (Tyr, Y)
n = 13 (2.13%)
Tryptophan (Trp, W)
n = 16 (2.62%)
Aspartic acid (Asp, D)
n = 16 (2.62%)
Glutamic acid (Glu, E)
n = 9 (1.48%)
Asparagine (Asn, N)
n = 25 (4.1%)
Glutamine (Gln, Q)
n = 19 (3.11%)
Histidine (His, H)
n = 12 (1.97%)
Lysine (Lys, K)
n = 20 (3.28%)
Arginine (Arg, R)
n = 9 (1.48%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
27 23 16 17 20 30 8 16 15 4 9 7 8 2 16 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
12 3 6 12 29 10 0 6 15 6 2 12 7 12 1 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
23 28 1 12 12 16 0 3 10 3 10 4 0 10 15 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 8 1 2 14 16 4 1 1 7 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
131 147 198 135
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 185 115 235
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
39 224 201 147
ND6 (size: 543 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (14.44%)
Alanine (Ala, A)
n = 18 (10.0%)
Serine (Ser, S)
n = 14 (7.78%)
Threonine (Thr, T)
n = 3 (1.67%)
Cysteine (Cys, C)
n = 2 (1.11%)
Valine (Val, V)
n = 29 (16.11%)
Leucine (Leu, L)
n = 28 (15.56%)
Isoleucine (Ile, I)
n = 5 (2.78%)
Methionine (Met, M)
n = 8 (4.44%)
Proline (Pro, P)
n = 5 (2.78%)
Phenylalanine (Phe, F)
n = 11 (6.11%)
Tyrosine (Tyr, Y)
n = 9 (5.0%)
Tryptophan (Trp, W)
n = 6 (3.33%)
Aspartic acid (Asp, D)
n = 2 (1.11%)
Glutamic acid (Glu, E)
n = 6 (3.33%)
Asparagine (Asn, N)
n = 1 (0.56%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.56%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 6 (3.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 0 2 2 0 3 1 15 0 0 11 0 6 12 11 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 2 0 11 1 3 3 3 1 3 19 5 0 0 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 0 7 0 1 2 4 0 9 0 3 7 1 0 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 6 2 0 0 0 0 0 3 3 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 18 21 61
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 36 20 81
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
62 2 40 77
Total protein-coding genes (size: 11446 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 237 (6.22%)
Alanine (Ala, A)
n = 334 (8.76%)
Serine (Ser, S)
n = 255 (6.69%)
Threonine (Thr, T)
n = 310 (8.13%)
Cysteine (Cys, C)
n = 29 (0.76%)
Valine (Val, V)
n = 211 (5.54%)
Leucine (Leu, L)
n = 650 (17.05%)
Isoleucine (Ile, I)
n = 283 (7.42%)
Methionine (Met, M)
n = 168 (4.41%)
Proline (Pro, P)
n = 211 (5.54%)
Phenylalanine (Phe, F)
n = 242 (6.35%)
Tyrosine (Tyr, Y)
n = 112 (2.94%)
Tryptophan (Trp, W)
n = 120 (3.15%)
Aspartic acid (Asp, D)
n = 76 (1.99%)
Glutamic acid (Glu, E)
n = 99 (2.6%)
Asparagine (Asn, N)
n = 112 (2.94%)
Glutamine (Gln, Q)
n = 97 (2.54%)
Histidine (His, H)
n = 105 (2.75%)
Lysine (Lys, K)
n = 77 (2.02%)
Arginine (Arg, R)
n = 78 (2.05%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
160 123 110 143 110 199 41 143 86 11 68 42 74 27 128 114
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
58 12 17 86 138 104 6 32 79 70 56 61 72 76 2 80
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
92 129 9 55 67 73 4 15 41 48 64 20 14 52 60 40
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
65 77 22 24 52 69 8 10 13 51 4 1 0 5 1 100
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
957 984 1007 865
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
521 1054 684 1554
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
283 1149 1367 1014 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​R​a​c​h​y​c​e​n​t​r​o​n​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ c​a​n​a​d​u​m​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.