Viewing data for Cymatogaster aggregata


Scientific name Cymatogaster aggregata
Common name Shiner perch
Maximum lifespan 8.00 years (Cymatogaster aggregata@AnAge)

Total mtDNA (size: 16533 bases) GC AT G C A T
Base content (bases) 7254 9279 4565 2689 4677 4602
Base content per 1 kb (bases) 439 561 276 163 283 278
Base content (%) 43.9% 56.1%
Total protein-coding genes (size: 11452 bases) GC AT G C A T
Base content (bases) 5076 6376 3367 1709 3407 2969
Base content per 1 kb (bases) 443 557 294 149 298 259
Base content (%) 44.3% 55.7%
D-loop (size: 820 bases) GC AT G C A T
Base content (bases) 288 532 164 124 273 259
Base content per 1 kb (bases) 351 649 200 151 333 316
Base content (%) 35.1% 64.9%
Total tRNA-coding genes (size: 1555 bases) GC AT G C A T
Base content (bases) 679 876 383 296 394 482
Base content per 1 kb (bases) 437 563 246 190 253 310
Base content (%) 43.7% 56.3%
Total rRNA-coding genes (size: 2639 bases) GC AT G C A T
Base content (bases) 1184 1455 636 548 582 873
Base content per 1 kb (bases) 449 551 241 208 221 331
Base content (%) 44.9% 55.1%
12S rRNA gene (size: 946 bases) GC AT G C A T
Base content (bases) 445 501 236 209 206 295
Base content per 1 kb (bases) 470 530 249 221 218 312
Base content (%) 47.0% 53.0%
16S rRNA gene (size: 1693 bases) GC AT G C A T
Base content (bases) 739 954 400 339 376 578
Base content per 1 kb (bases) 437 563 236 200 222 341
Base content (%) 43.7% 56.3%

ATP6 (size: 683 bases) GC AT G C A T
Base content (bases) 302 381 212 90 213 168
Base content per 1 kb (bases) 442 558 310 132 312 246
Base content (%) 44.2% 55.8%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 70 98 49 21 47 51
Base content per 1 kb (bases) 417 583 292 125 280 304
Base content (%) 41.7% 58.3%
COX1 (size: 1596 bases) GC AT G C A T
Base content (bases) 736 860 445 291 474 386
Base content per 1 kb (bases) 461 539 279 182 297 242
Base content (%) 46.1% 53.9%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 299 392 184 115 205 187
Base content per 1 kb (bases) 433 567 266 166 297 271
Base content (%) 43.3% 56.7%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 359 426 220 139 236 190
Base content per 1 kb (bases) 457 543 280 177 301 242
Base content (%) 45.7% 54.3%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 488 653 320 168 374 279
Base content per 1 kb (bases) 428 572 280 147 328 245
Base content (%) 42.8% 57.2%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 416 559 273 143 317 242
Base content per 1 kb (bases) 427 573 280 147 325 248
Base content (%) 42.7% 57.3%
ND2 (size: 1046 bases) GC AT G C A T
Base content (bases) 480 566 349 131 292 274
Base content per 1 kb (bases) 459 541 334 125 279 262
Base content (%) 45.9% 54.1%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 164 185 109 55 115 70
Base content per 1 kb (bases) 470 530 312 158 330 201
Base content (%) 47.0% 53.0%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 626 755 427 199 397 358
Base content per 1 kb (bases) 453 547 309 144 287 259
Base content (%) 45.3% 54.7%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 140 157 93 47 89 68
Base content per 1 kb (bases) 471 529 313 158 300 229
Base content (%) 47.1% 52.9%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 767 1072 523 244 560 512
Base content per 1 kb (bases) 417 583 284 133 305 278
Base content (%) 41.7% 58.3%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 235 287 167 68 93 194
Base content per 1 kb (bases) 450 550 320 130 178 372
Base content (%) 45.0% 55.0%

ATP6 (size: 683 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.42%)
Alanine (Ala, A)
n = 19 (8.41%)
Serine (Ser, S)
n = 7 (3.1%)
Threonine (Thr, T)
n = 23 (10.18%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 14 (6.19%)
Leucine (Leu, L)
n = 53 (23.45%)
Isoleucine (Ile, I)
n = 16 (7.08%)
Methionine (Met, M)
n = 11 (4.87%)
Proline (Pro, P)
n = 17 (7.52%)
Phenylalanine (Phe, F)
n = 12 (5.31%)
Tyrosine (Tyr, Y)
n = 5 (2.21%)
Tryptophan (Trp, W)
n = 5 (2.21%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.77%)
Asparagine (Asn, N)
n = 9 (3.98%)
Glutamine (Gln, Q)
n = 9 (3.98%)
Histidine (His, H)
n = 4 (1.77%)
Lysine (Lys, K)
n = 2 (0.88%)
Arginine (Arg, R)
n = 6 (2.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 4 7 15 15 10 1 11 6 3 7 4 2 1 11 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 6 10 2 1 1 2 3 4 5 7 4 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 8 0 1 1 0 0 1 4 0 5 0 1 3 6 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 4 0 0 1 2 0 0 3 3 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
48 77 66 36
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 61 34 106
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 74 67 70
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPTPWFVILAFSWLIFAAVIPPKILANIFPNEPSAQSTEKSKTEPWNWPWH*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 5 (9.09%)
Serine (Ser, S)
n = 4 (7.27%)
Threonine (Thr, T)
n = 3 (5.45%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (3.64%)
Leucine (Leu, L)
n = 4 (7.27%)
Isoleucine (Ile, I)
n = 5 (9.09%)
Methionine (Met, M)
n = 1 (1.82%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 3 (5.45%)
Asparagine (Asn, N)
n = 4 (7.27%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 1 (1.82%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 1 0 1 1 1 0 1 2 0 1 0 1 0 2 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 2 2 0 1 0 0 0 0 2 3 4 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 2 0 2 1 0 0 1 0 0 0 0 0 2 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 2 0 0 2 1 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
10 15 17 14
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 20 14 16
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 14 20 17
COX1 (size: 1596 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 48 (9.04%)
Alanine (Ala, A)
n = 47 (8.85%)
Serine (Ser, S)
n = 30 (5.65%)
Threonine (Thr, T)
n = 36 (6.78%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 41 (7.72%)
Leucine (Leu, L)
n = 65 (12.24%)
Isoleucine (Ile, I)
n = 40 (7.53%)
Methionine (Met, M)
n = 23 (4.33%)
Proline (Pro, P)
n = 30 (5.65%)
Phenylalanine (Phe, F)
n = 44 (8.29%)
Tyrosine (Tyr, Y)
n = 20 (3.77%)
Tryptophan (Trp, W)
n = 18 (3.39%)
Aspartic acid (Asp, D)
n = 16 (3.01%)
Glutamic acid (Glu, E)
n = 13 (2.45%)
Asparagine (Asn, N)
n = 14 (2.64%)
Glutamine (Gln, Q)
n = 9 (1.69%)
Histidine (His, H)
n = 19 (3.58%)
Lysine (Lys, K)
n = 9 (1.69%)
Arginine (Arg, R)
n = 8 (1.51%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 21 17 17 13 18 8 8 6 3 6 11 21 3 26 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 1 13 20 12 2 8 19 11 10 9 11 9 1 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 14 0 5 11 6 4 3 1 6 14 4 1 7 7 8
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 11 2 3 13 8 1 2 1 3 2 0 0 1 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
165 122 126 119
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
79 139 101 213
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
47 184 159 142
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.37%)
Alanine (Ala, A)
n = 15 (6.55%)
Serine (Ser, S)
n = 17 (7.42%)
Threonine (Thr, T)
n = 11 (4.8%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 19 (8.3%)
Leucine (Leu, L)
n = 28 (12.23%)
Isoleucine (Ile, I)
n = 20 (8.73%)
Methionine (Met, M)
n = 12 (5.24%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 11 (4.8%)
Tyrosine (Tyr, Y)
n = 8 (3.49%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 14 (6.11%)
Asparagine (Asn, N)
n = 4 (1.75%)
Glutamine (Gln, Q)
n = 8 (3.49%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 3 (1.31%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 10 10 15 6 6 1 0 7 1 5 3 6 5 8 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 7 4 4 0 2 2 4 2 3 6 4 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 7 1 3 6 5 0 1 2 3 5 1 0 2 2 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 11 3 7 6 3 0 0 2 3 1 0 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 66 53 40
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 54 60 90
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 64 74 74
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 26 (10.0%)
Serine (Ser, S)
n = 12 (4.62%)
Threonine (Thr, T)
n = 20 (7.69%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 18 (6.92%)
Leucine (Leu, L)
n = 32 (12.31%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 24 (9.23%)
Tyrosine (Tyr, Y)
n = 10 (3.85%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 6 (2.31%)
Glutamic acid (Glu, E)
n = 10 (3.85%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 6 7 7 7 10 3 4 9 0 6 6 3 3 12 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 6 8 11 1 5 9 6 1 4 6 2 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 6 1 1 4 4 0 1 2 4 6 2 1 0 1 11
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 10 0 2 4 1 1 2 0 3 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 69 49 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 67 54 97
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 84 86 76
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 23 (6.07%)
Alanine (Ala, A)
n = 32 (8.44%)
Serine (Ser, S)
n = 21 (5.54%)
Threonine (Thr, T)
n = 23 (6.07%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 29 (7.65%)
Leucine (Leu, L)
n = 59 (15.57%)
Isoleucine (Ile, I)
n = 31 (8.18%)
Methionine (Met, M)
n = 8 (2.11%)
Proline (Pro, P)
n = 19 (5.01%)
Phenylalanine (Phe, F)
n = 32 (8.44%)
Tyrosine (Tyr, Y)
n = 13 (3.43%)
Tryptophan (Trp, W)
n = 14 (3.69%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 19 (5.01%)
Glutamine (Gln, Q)
n = 7 (1.85%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 13 7 20 12 12 2 13 7 0 11 8 9 1 16 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 2 2 8 10 13 1 3 12 7 1 8 8 3 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 10 1 7 7 6 0 0 1 3 10 1 0 8 11 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 4 2 4 7 5 4 1 2 2 3 0 0 0 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
101 92 91 96
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
50 94 77 159
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 134 111 118
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 34 (10.49%)
Serine (Ser, S)
n = 21 (6.48%)
Threonine (Thr, T)
n = 20 (6.17%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 20 (6.17%)
Leucine (Leu, L)
n = 65 (20.06%)
Isoleucine (Ile, I)
n = 23 (7.1%)
Methionine (Met, M)
n = 11 (3.4%)
Proline (Pro, P)
n = 22 (6.79%)
Phenylalanine (Phe, F)
n = 22 (6.79%)
Tyrosine (Tyr, Y)
n = 10 (3.09%)
Tryptophan (Trp, W)
n = 7 (2.16%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 11 (3.4%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 3 (0.93%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 11 9 26 8 17 4 7 7 0 8 4 6 2 18 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 12 9 13 0 2 6 7 3 7 9 5 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 7 0 4 4 9 1 1 2 6 4 0 3 4 7 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 10 1 2 2 5 2 2 2 4 0 0 0 0 1 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
87 95 75 68
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
36 94 54 141
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 84 113 108
ND2 (size: 1046 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (5.48%)
Alanine (Ala, A)
n = 36 (10.37%)
Serine (Ser, S)
n = 20 (5.76%)
Threonine (Thr, T)
n = 47 (13.54%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (2.88%)
Leucine (Leu, L)
n = 73 (21.04%)
Isoleucine (Ile, I)
n = 25 (7.2%)
Methionine (Met, M)
n = 16 (4.61%)
Proline (Pro, P)
n = 22 (6.34%)
Phenylalanine (Phe, F)
n = 12 (3.46%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 12 (3.46%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 7 (2.02%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 11 12 29 14 16 3 10 13 1 6 2 2 0 8 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 10 16 9 1 2 12 4 1 5 13 2 2 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 17 1 2 7 5 2 1 3 3 4 4 1 6 6 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 3 1 1 1 7 0 1 0 2 1 0 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 109 111 57
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 121 53 136
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 119 109 98
ND3 (size: 1046 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (5.48%)
Alanine (Ala, A)
n = 36 (10.37%)
Serine (Ser, S)
n = 20 (5.76%)
Threonine (Thr, T)
n = 47 (13.54%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (2.88%)
Leucine (Leu, L)
n = 73 (21.04%)
Isoleucine (Ile, I)
n = 25 (7.2%)
Methionine (Met, M)
n = 16 (4.61%)
Proline (Pro, P)
n = 22 (6.34%)
Phenylalanine (Phe, F)
n = 12 (3.46%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.15%)
Asparagine (Asn, N)
n = 12 (3.46%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 7 (2.02%)
Arginine (Arg, R)
n = 4 (1.15%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 11 12 29 14 16 3 10 13 1 6 2 2 0 8 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 10 16 9 1 2 12 4 1 5 13 2 2 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 17 1 2 7 5 2 1 3 3 4 4 1 6 6 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 3 1 1 1 7 0 1 0 2 1 0 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 109 111 57
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 121 53 136
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
22 119 109 98
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (5.45%)
Alanine (Ala, A)
n = 41 (8.93%)
Serine (Ser, S)
n = 33 (7.19%)
Threonine (Thr, T)
n = 41 (8.93%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 15 (3.27%)
Leucine (Leu, L)
n = 94 (20.48%)
Isoleucine (Ile, I)
n = 34 (7.41%)
Methionine (Met, M)
n = 26 (5.66%)
Proline (Pro, P)
n = 27 (5.88%)
Phenylalanine (Phe, F)
n = 17 (3.7%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 18 (3.92%)
Aspartic acid (Asp, D)
n = 5 (1.09%)
Glutamic acid (Glu, E)
n = 13 (2.83%)
Asparagine (Asn, N)
n = 10 (2.18%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 10 (2.18%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 12 (2.61%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 10 21 25 17 34 7 10 9 1 4 4 6 1 10 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 4 8 24 9 0 4 12 5 4 8 13 5 1 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 14 1 8 11 3 1 1 9 8 6 5 1 3 7 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 11 2 4 1 9 1 1 5 6 0 0 0 0 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
99 142 131 88
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
70 132 72 186
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
30 153 155 122
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 14 (14.29%)
Serine (Ser, S)
n = 10 (10.2%)
Threonine (Thr, T)
n = 9 (9.18%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 24 (24.49%)
Isoleucine (Ile, I)
n = 1 (1.02%)
Methionine (Met, M)
n = 5 (5.1%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 7 (7.14%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 2 (2.04%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 0 4 4 3 7 1 8 3 0 1 0 0 0 3 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 2 5 6 3 0 0 1 2 2 0 1 1 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 1 0 1 2 4 1 1 1 0 0 1 1 1 1 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 0 2 0 2 0 0 0 2 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
24 27 19 29
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 33 14 38
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 33 35 22
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 30 (4.9%)
Alanine (Ala, A)
n = 55 (8.99%)
Serine (Ser, S)
n = 50 (8.17%)
Threonine (Thr, T)
n = 52 (8.5%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 24 (3.92%)
Leucine (Leu, L)
n = 92 (15.03%)
Isoleucine (Ile, I)
n = 52 (8.5%)
Methionine (Met, M)
n = 29 (4.74%)
Proline (Pro, P)
n = 29 (4.74%)
Phenylalanine (Phe, F)
n = 48 (7.84%)
Tyrosine (Tyr, Y)
n = 12 (1.96%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 15 (2.45%)
Glutamic acid (Glu, E)
n = 12 (1.96%)
Asparagine (Asn, N)
n = 29 (4.74%)
Glutamine (Gln, Q)
n = 18 (2.94%)
Histidine (His, H)
n = 14 (2.29%)
Lysine (Lys, K)
n = 22 (3.59%)
Arginine (Arg, R)
n = 9 (1.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
31 21 24 23 23 24 4 13 16 2 4 5 11 4 26 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 2 4 12 26 16 1 6 14 6 4 11 12 5 1 18
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 17 1 8 11 14 6 6 5 4 8 2 5 10 19 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 9 3 6 9 22 0 4 1 4 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
136 144 195 138
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
70 175 123 245
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
38 204 194 177
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (15.61%)
Alanine (Ala, A)
n = 18 (10.4%)
Serine (Ser, S)
n = 12 (6.94%)
Threonine (Thr, T)
n = 7 (4.05%)
Cysteine (Cys, C)
n = 1 (0.58%)
Valine (Val, V)
n = 25 (14.45%)
Leucine (Leu, L)
n = 29 (16.76%)
Isoleucine (Ile, I)
n = 1 (0.58%)
Methionine (Met, M)
n = 8 (4.62%)
Proline (Pro, P)
n = 5 (2.89%)
Phenylalanine (Phe, F)
n = 11 (6.36%)
Tyrosine (Tyr, Y)
n = 9 (5.2%)
Tryptophan (Trp, W)
n = 6 (3.47%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 6 (3.47%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 4 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 0 4 4 0 5 1 11 0 0 12 3 6 4 11 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 0 5 2 6 5 8 1 5 13 2 0 2 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 1 3 4 1 2 1 4 0 8 1 2 8 1 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 4 2 2 0 0 0 0 0 2 2 0 0 0 1 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
78 20 21 55
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 38 20 74
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
47 10 52 65
Total protein-coding genes (size: 11473 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 242 (6.34%)
Alanine (Ala, A)
n = 348 (9.11%)
Serine (Ser, S)
n = 243 (6.36%)
Threonine (Thr, T)
n = 300 (7.85%)
Cysteine (Cys, C)
n = 25 (0.65%)
Valine (Val, V)
n = 226 (5.92%)
Leucine (Leu, L)
n = 646 (16.91%)
Isoleucine (Ile, I)
n = 270 (7.07%)
Methionine (Met, M)
n = 162 (4.24%)
Proline (Pro, P)
n = 216 (5.65%)
Phenylalanine (Phe, F)
n = 253 (6.62%)
Tyrosine (Tyr, Y)
n = 110 (2.88%)
Tryptophan (Trp, W)
n = 121 (3.17%)
Aspartic acid (Asp, D)
n = 81 (2.12%)
Glutamic acid (Glu, E)
n = 104 (2.72%)
Asparagine (Asn, N)
n = 117 (3.06%)
Glutamine (Gln, Q)
n = 99 (2.59%)
Histidine (His, H)
n = 102 (2.67%)
Lysine (Lys, K)
n = 75 (1.96%)
Arginine (Arg, R)
n = 75 (1.96%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
159 111 123 195 128 164 38 98 88 11 74 53 75 24 155 98
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
39 9 16 95 141 99 13 41 93 61 47 66 94 47 9 76
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
108 107 9 48 67 61 16 21 30 46 64 23 23 48 69 42
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
60 83 21 33 48 65 10 13 19 33 10 0 0 4 2 98
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1001 1017 975 828
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
514 1056 694 1557
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
295 1199 1206 1121 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​C​y​m​a​t​o​g​a​s​t​e​r​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ a​g​g​r​e​g​a​t​a​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.