Viewing data for Potamochoerus porcus


Scientific name Potamochoerus porcus
Common name Red river hog
Maximum lifespan 22.00 years (Potamochoerus porcus@AnAge)

Total mtDNA (size: 16693 bases) GC AT G C A T
Base content (bases) 6586 10107 4214 2372 4478 5629
Base content per 1 kb (bases) 395 605 252 142 268 337
Base content (%) 39.5% 60.5%
Total protein-coding genes (size: 11342 bases) GC AT G C A T
Base content (bases) 4492 6850 3020 1472 3116 3734
Base content per 1 kb (bases) 396 604 266 130 275 329
Base content (%) 39.6% 60.4%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1499 bases) GC AT G C A T
Base content (bases) 561 938 322 239 411 527
Base content per 1 kb (bases) 374 626 215 159 274 352
Base content (%) 37.4% 62.6%
Total rRNA-coding genes (size: 2535 bases) GC AT G C A T
Base content (bases) 974 1561 535 439 607 954
Base content per 1 kb (bases) 384 616 211 173 239 376
Base content (%) 38.4% 61.6%
12S rRNA gene (size: 962 bases) GC AT G C A T
Base content (bases) 398 564 217 181 222 342
Base content per 1 kb (bases) 414 586 226 188 231 356
Base content (%) 41.4% 58.6%
16S rRNA gene (size: 1573 bases) GC AT G C A T
Base content (bases) 576 997 318 258 385 612
Base content per 1 kb (bases) 366 634 202 164 245 389
Base content (%) 36.6% 63.4%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 277 404 199 78 186 218
Base content per 1 kb (bases) 407 593 292 115 273 320
Base content (%) 40.7% 59.3%
ATP8 (size: 204 bases) GC AT G C A T
Base content (bases) 62 142 44 18 60 82
Base content per 1 kb (bases) 304 696 216 88 294 402
Base content (%) 30.4% 69.6%
COX1 (size: 1545 bases) GC AT G C A T
Base content (bases) 637 908 359 278 471 437
Base content per 1 kb (bases) 412 588 232 180 305 283
Base content (%) 41.2% 58.8%
COX2 (size: 688 bases) GC AT G C A T
Base content (bases) 271 417 174 97 184 233
Base content per 1 kb (bases) 394 606 253 141 267 339
Base content (%) 39.4% 60.6%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 340 444 216 124 218 226
Base content per 1 kb (bases) 434 566 276 158 278 288
Base content (%) 43.4% 56.6%
CYTB (size: 1140 bases) GC AT G C A T
Base content (bases) 480 660 319 161 310 350
Base content per 1 kb (bases) 421 579 280 141 272 307
Base content (%) 42.1% 57.9%
ND1 (size: 955 bases) GC AT G C A T
Base content (bases) 384 571 265 119 258 313
Base content per 1 kb (bases) 402 598 277 125 270 328
Base content (%) 40.2% 59.8%
ND2 (size: 1042 bases) GC AT G C A T
Base content (bases) 377 665 273 104 268 397
Base content per 1 kb (bases) 362 638 262 100 257 381
Base content (%) 36.2% 63.8%
ND3 (size: 347 bases) GC AT G C A T
Base content (bases) 140 207 93 47 93 114
Base content per 1 kb (bases) 403 597 268 135 268 329
Base content (%) 40.3% 59.7%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 546 832 391 155 379 453
Base content per 1 kb (bases) 396 604 284 112 275 329
Base content (%) 39.6% 60.4%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 113 184 74 39 96 88
Base content per 1 kb (bases) 380 620 249 131 323 296
Base content (%) 38.0% 62.0%
ND5 (size: 1821 bases) GC AT G C A T
Base content (bases) 691 1130 480 211 509 621
Base content per 1 kb (bases) 379 621 264 116 280 341
Base content (%) 37.9% 62.1%
ND6 (size: 528 bases) GC AT G C A T
Base content (bases) 195 333 148 47 106 227
Base content per 1 kb (bases) 369 631 280 89 201 430
Base content (%) 36.9% 63.1%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.42%)
Alanine (Ala, A)
n = 17 (7.52%)
Serine (Ser, S)
n = 14 (6.19%)
Threonine (Thr, T)
n = 27 (11.95%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (4.42%)
Leucine (Leu, L)
n = 39 (17.26%)
Isoleucine (Ile, I)
n = 25 (11.06%)
Methionine (Met, M)
n = 12 (5.31%)
Proline (Pro, P)
n = 13 (5.75%)
Phenylalanine (Phe, F)
n = 14 (6.19%)
Tyrosine (Tyr, Y)
n = 2 (0.88%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 10 (4.42%)
Glutamine (Gln, Q)
n = 10 (4.42%)
Histidine (His, H)
n = 7 (3.1%)
Lysine (Lys, K)
n = 5 (2.21%)
Arginine (Arg, R)
n = 4 (1.77%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 13 9 3 3 20 4 9 8 2 1 2 6 1 5 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 5 6 5 1 0 4 6 0 5 4 4 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 13 2 5 0 5 0 0 4 2 0 1 0 2 8 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 3 0 0 1 3 2 0 2 2 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
41 64 83 39
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
21 67 39 100
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 68 96 47
ATP8 (size: 204 bases)
Amino acid sequence: MPQLDTSTWFLTIMSMIMTLFILFQLKISNYLYPMNPEPVEMKVQKHDTPWEMKWTKIYLPLSLPLR*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 4 (5.97%)
Threonine (Thr, T)
n = 6 (8.96%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (2.99%)
Leucine (Leu, L)
n = 10 (14.93%)
Isoleucine (Ile, I)
n = 5 (7.46%)
Methionine (Met, M)
n = 7 (10.45%)
Proline (Pro, P)
n = 7 (10.45%)
Phenylalanine (Phe, F)
n = 3 (4.48%)
Tyrosine (Tyr, Y)
n = 3 (4.48%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 2 (2.99%)
Glutamic acid (Glu, E)
n = 3 (4.48%)
Asparagine (Asn, N)
n = 2 (2.99%)
Glutamine (Gln, Q)
n = 3 (4.48%)
Histidine (His, H)
n = 1 (1.49%)
Lysine (Lys, K)
n = 5 (7.46%)
Arginine (Arg, R)
n = 1 (1.49%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 2 5 2 0 3 0 3 3 0 1 0 1 0 3 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 0 0 0 0 0 0 0 0 1 2 4 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 4 1 1 0 2 1 0 0 1 2 0 2 0 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 3 0 1 1 4 1 0 0 1 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
7 17 25 19
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
4 17 20 27
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 10 37 14
COX1 (size: 1545 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.14%)
Alanine (Ala, A)
n = 41 (7.98%)
Serine (Ser, S)
n = 32 (6.23%)
Threonine (Thr, T)
n = 36 (7.0%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 37 (7.2%)
Leucine (Leu, L)
n = 59 (11.48%)
Isoleucine (Ile, I)
n = 39 (7.59%)
Methionine (Met, M)
n = 32 (6.23%)
Proline (Pro, P)
n = 28 (5.45%)
Phenylalanine (Phe, F)
n = 41 (7.98%)
Tyrosine (Tyr, Y)
n = 20 (3.89%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 15 (2.92%)
Glutamic acid (Glu, E)
n = 10 (1.95%)
Asparagine (Asn, N)
n = 17 (3.31%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 18 (3.5%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 16 24 6 3 22 12 12 5 2 6 1 28 2 17 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 0 1 11 10 17 3 14 7 19 7 9 5 13 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 18 3 6 9 11 2 1 3 12 8 2 4 9 8 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 8 2 8 7 7 2 3 1 4 0 0 0 0 1 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
150 104 137 124
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 133 97 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
51 122 203 139
COX2 (size: 688 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.95%)
Alanine (Ala, A)
n = 9 (3.95%)
Serine (Ser, S)
n = 19 (8.33%)
Threonine (Thr, T)
n = 20 (8.77%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 12 (5.26%)
Leucine (Leu, L)
n = 33 (14.47%)
Isoleucine (Ile, I)
n = 18 (7.89%)
Methionine (Met, M)
n = 16 (7.02%)
Proline (Pro, P)
n = 13 (5.7%)
Phenylalanine (Phe, F)
n = 7 (3.07%)
Tyrosine (Tyr, Y)
n = 11 (4.82%)
Tryptophan (Trp, W)
n = 5 (2.19%)
Aspartic acid (Asp, D)
n = 11 (4.82%)
Glutamic acid (Glu, E)
n = 14 (6.14%)
Asparagine (Asn, N)
n = 5 (2.19%)
Glutamine (Gln, Q)
n = 6 (2.63%)
Histidine (His, H)
n = 7 (3.07%)
Lysine (Lys, K)
n = 6 (2.63%)
Arginine (Arg, R)
n = 6 (2.63%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 5 14 3 5 17 3 5 5 1 2 2 7 1 5 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 2 3 6 0 0 1 3 3 2 2 5 6 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 14 0 4 2 8 1 0 4 7 4 2 0 2 3 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 13 1 4 7 4 2 0 0 5 1 0 0 0 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
55 60 69 45
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 57 60 86
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 57 104 52
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 18 (6.92%)
Serine (Ser, S)
n = 21 (8.08%)
Threonine (Thr, T)
n = 20 (7.69%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 37 (14.23%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 7 (2.69%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 21 (8.08%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 6 (2.31%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 7 6 5 4 20 2 5 6 1 2 3 10 1 6 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 2 2 8 8 0 4 3 12 1 0 2 10 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 9 1 6 2 7 2 2 2 5 6 2 1 2 4 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 6 2 2 2 2 1 0 0 5 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
66 72 54 69
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 67 56 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 77 116 53
CYTB (size: 1140 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.33%)
Alanine (Ala, A)
n = 24 (6.33%)
Serine (Ser, S)
n = 26 (6.86%)
Threonine (Thr, T)
n = 26 (6.86%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 19 (5.01%)
Leucine (Leu, L)
n = 55 (14.51%)
Isoleucine (Ile, I)
n = 43 (11.35%)
Methionine (Met, M)
n = 15 (3.96%)
Proline (Pro, P)
n = 23 (6.07%)
Phenylalanine (Phe, F)
n = 25 (6.6%)
Tyrosine (Tyr, Y)
n = 15 (3.96%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 16 (4.22%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 24 11 5 4 27 6 11 5 1 2 5 10 2 7 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 3 4 8 12 0 3 6 13 2 1 8 14 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 15 0 2 5 14 0 1 4 6 9 0 2 5 11 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 4 2 1 10 5 4 0 2 6 0 1 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
84 91 115 90
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
54 94 75 157
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 134 160 63
ND1 (size: 955 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.79%)
Alanine (Ala, A)
n = 31 (9.78%)
Serine (Ser, S)
n = 24 (7.57%)
Threonine (Thr, T)
n = 24 (7.57%)
Cysteine (Cys, C)
n = 1 (0.32%)
Valine (Val, V)
n = 14 (4.42%)
Leucine (Leu, L)
n = 54 (17.03%)
Isoleucine (Ile, I)
n = 29 (9.15%)
Methionine (Met, M)
n = 18 (5.68%)
Proline (Pro, P)
n = 19 (5.99%)
Phenylalanine (Phe, F)
n = 19 (5.99%)
Tyrosine (Tyr, Y)
n = 12 (3.79%)
Tryptophan (Trp, W)
n = 9 (2.84%)
Aspartic acid (Asp, D)
n = 4 (1.26%)
Glutamic acid (Glu, E)
n = 11 (3.47%)
Asparagine (Asn, N)
n = 11 (3.47%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 5 (1.58%)
Lysine (Lys, K)
n = 7 (2.21%)
Arginine (Arg, R)
n = 8 (2.52%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 13 15 3 7 31 2 10 6 0 1 1 11 1 7 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 4 10 15 2 1 3 7 1 3 7 7 2 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 16 0 1 7 12 0 0 4 5 7 1 1 4 7 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 11 0 2 2 7 0 0 0 8 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 81 93 72
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 94 56 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 90 164 51
ND2 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 21 (6.07%)
Serine (Ser, S)
n = 28 (8.09%)
Threonine (Thr, T)
n = 36 (10.4%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 13 (3.76%)
Leucine (Leu, L)
n = 57 (16.47%)
Isoleucine (Ile, I)
n = 27 (7.8%)
Methionine (Met, M)
n = 45 (13.01%)
Proline (Pro, P)
n = 18 (5.2%)
Phenylalanine (Phe, F)
n = 12 (3.47%)
Tyrosine (Tyr, Y)
n = 10 (2.89%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 6 (1.73%)
Asparagine (Asn, N)
n = 17 (4.91%)
Glutamine (Gln, Q)
n = 11 (3.18%)
Histidine (His, H)
n = 4 (1.16%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 14 39 7 4 29 3 13 10 1 0 4 8 1 6 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 1 0 12 8 1 1 3 9 1 1 6 11 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 22 0 2 7 14 1 0 4 3 7 0 1 4 13 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 5 1 0 0 12 1 0 0 4 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
54 80 142 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 99 61 154
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 94 194 42
ND3 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 21 (6.07%)
Serine (Ser, S)
n = 28 (8.09%)
Threonine (Thr, T)
n = 36 (10.4%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 13 (3.76%)
Leucine (Leu, L)
n = 57 (16.47%)
Isoleucine (Ile, I)
n = 27 (7.8%)
Methionine (Met, M)
n = 45 (13.01%)
Proline (Pro, P)
n = 18 (5.2%)
Phenylalanine (Phe, F)
n = 12 (3.47%)
Tyrosine (Tyr, Y)
n = 10 (2.89%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 6 (1.73%)
Asparagine (Asn, N)
n = 17 (4.91%)
Glutamine (Gln, Q)
n = 11 (3.18%)
Histidine (His, H)
n = 4 (1.16%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 14 39 7 4 29 3 13 10 1 0 4 8 1 6 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 1 0 12 8 1 1 3 9 1 1 6 11 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 22 0 2 7 14 1 0 4 3 7 0 1 4 13 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 5 1 0 0 12 1 0 0 4 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
54 80 142 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 99 61 154
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 94 194 42
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 17 (3.71%)
Alanine (Ala, A)
n = 29 (6.33%)
Serine (Ser, S)
n = 38 (8.3%)
Threonine (Thr, T)
n = 42 (9.17%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 15 (3.28%)
Leucine (Leu, L)
n = 89 (19.43%)
Isoleucine (Ile, I)
n = 44 (9.61%)
Methionine (Met, M)
n = 36 (7.86%)
Proline (Pro, P)
n = 20 (4.37%)
Phenylalanine (Phe, F)
n = 18 (3.93%)
Tyrosine (Tyr, Y)
n = 16 (3.49%)
Tryptophan (Trp, W)
n = 13 (2.84%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 8 (1.75%)
Asparagine (Asn, N)
n = 23 (5.02%)
Glutamine (Gln, Q)
n = 9 (1.97%)
Histidine (His, H)
n = 13 (2.84%)
Lysine (Lys, K)
n = 12 (2.62%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 20 30 12 12 44 13 7 9 0 0 3 12 0 4 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 2 5 13 9 2 3 3 9 2 5 5 10 0 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 24 1 7 11 10 0 1 9 6 10 2 1 9 14 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 8 0 1 3 11 1 0 2 7 1 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 133 167 86
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 119 85 202
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 139 201 90
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 8 (8.16%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 4 (4.08%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 6 (6.12%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 8 (8.16%)
Methionine (Met, M)
n = 11 (11.22%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 4 (4.08%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 5 (5.1%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 2 (2.04%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 5 8 2 5 6 1 6 2 0 1 0 4 1 2 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 3 1 3 4 0 1 1 2 0 0 1 1 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 2 0 3 1 3 0 0 2 2 2 0 2 3 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 1 1 0 1 0 0 0 0 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
21 21 30 27
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
10 21 17 51
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 32 41 18
ND5 (size: 1821 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (4.62%)
Alanine (Ala, A)
n = 39 (6.44%)
Serine (Ser, S)
n = 50 (8.25%)
Threonine (Thr, T)
n = 51 (8.42%)
Cysteine (Cys, C)
n = 6 (0.99%)
Valine (Val, V)
n = 23 (3.8%)
Leucine (Leu, L)
n = 86 (14.19%)
Isoleucine (Ile, I)
n = 54 (8.91%)
Methionine (Met, M)
n = 47 (7.76%)
Proline (Pro, P)
n = 27 (4.46%)
Phenylalanine (Phe, F)
n = 41 (6.77%)
Tyrosine (Tyr, Y)
n = 22 (3.63%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 12 (1.98%)
Glutamic acid (Glu, E)
n = 13 (2.15%)
Asparagine (Asn, N)
n = 33 (5.45%)
Glutamine (Gln, Q)
n = 17 (2.81%)
Histidine (His, H)
n = 15 (2.48%)
Lysine (Lys, K)
n = 21 (3.47%)
Arginine (Arg, R)
n = 9 (1.49%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
29 25 41 8 11 42 2 20 16 1 0 5 13 5 16 25
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 5 7 11 20 1 0 9 17 2 4 10 12 1 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 25 3 8 13 15 3 3 8 6 16 0 3 10 23 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 10 3 6 6 21 0 1 3 5 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
115 131 217 144
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
66 156 134 251
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
30 193 270 114
ND6 (size: 528 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (14.86%)
Alanine (Ala, A)
n = 7 (4.0%)
Serine (Ser, S)
n = 12 (6.86%)
Threonine (Thr, T)
n = 10 (5.71%)
Cysteine (Cys, C)
n = 3 (1.71%)
Valine (Val, V)
n = 24 (13.71%)
Leucine (Leu, L)
n = 18 (10.29%)
Isoleucine (Ile, I)
n = 14 (8.0%)
Methionine (Met, M)
n = 10 (5.71%)
Proline (Pro, P)
n = 3 (1.71%)
Phenylalanine (Phe, F)
n = 12 (6.86%)
Tyrosine (Tyr, Y)
n = 10 (5.71%)
Tryptophan (Trp, W)
n = 4 (2.29%)
Aspartic acid (Asp, D)
n = 3 (1.71%)
Glutamic acid (Glu, E)
n = 10 (5.71%)
Asparagine (Asn, N)
n = 4 (2.29%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 4 (2.29%)
Arginine (Arg, R)
n = 1 (0.57%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 0 3 5 0 0 0 5 0 0 14 1 3 6 12 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 3 0 4 1 1 1 12 3 3 8 2 1 0 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
1 1 1 6 0 2 0 3 1 10 0 1 8 2 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 5 5 3 0 1 3 1 0 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 9 46 51
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 28 32 78
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
40 10 28 98
Total protein-coding genes (size: 11410 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 214 (5.63%)
Alanine (Ala, A)
n = 255 (6.71%)
Serine (Ser, S)
n = 283 (7.45%)
Threonine (Thr, T)
n = 313 (8.24%)
Cysteine (Cys, C)
n = 27 (0.71%)
Valine (Val, V)
n = 194 (5.11%)
Leucine (Leu, L)
n = 587 (15.45%)
Isoleucine (Ile, I)
n = 324 (8.53%)
Methionine (Met, M)
n = 262 (6.89%)
Proline (Pro, P)
n = 191 (5.03%)
Phenylalanine (Phe, F)
n = 225 (5.92%)
Tyrosine (Tyr, Y)
n = 139 (3.66%)
Tryptophan (Trp, W)
n = 104 (2.74%)
Aspartic acid (Asp, D)
n = 71 (1.87%)
Glutamic acid (Glu, E)
n = 100 (2.63%)
Asparagine (Asn, N)
n = 153 (4.03%)
Glutamine (Gln, Q)
n = 87 (2.29%)
Histidine (His, H)
n = 101 (2.66%)
Lysine (Lys, K)
n = 98 (2.58%)
Arginine (Arg, R)
n = 66 (1.74%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
179 145 208 68 62 273 49 110 77 10 30 27 116 21 95 130
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
54 7 20 46 90 108 11 40 46 101 27 34 58 95 4 55
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
74 171 13 51 58 105 11 11 47 65 74 13 25 54 99 32
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
69 83 17 28 43 81 17 5 11 48 2 1 0 5 1 91
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
834 897 1209 861
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
470 984 755 1592
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
275 1053 1673 800 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​o​t​a​m​o​c​h​o​e​r​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ p​o​r​c​u​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.