Viewing data for Dallia pectoralis


Scientific name Dallia pectoralis
Common name Alaska blackfish
Maximum lifespan 8.00 years (Dallia pectoralis@AnAge)

Total mtDNA (size: 17157 bases) GC AT G C A T
Base content (bases) 7300 9857 4645 2655 5049 4808
Base content per 1 kb (bases) 425 575 271 155 294 280
Base content (%) 42.5% 57.5%
Total protein-coding genes (size: 11406 bases) GC AT G C A T
Base content (bases) 4830 6576 3225 1605 3604 2972
Base content per 1 kb (bases) 423 577 283 141 316 261
Base content (%) 42.3% 57.7%
D-loop (size: 1191 bases) GC AT G C A T
Base content (bases) 447 744 279 168 363 381
Base content per 1 kb (bases) 375 625 234 141 305 320
Base content (%) 37.5% 62.5%
Total tRNA-coding genes (size: 1554 bases) GC AT G C A T
Base content (bases) 687 867 387 300 393 474
Base content per 1 kb (bases) 442 558 249 193 253 305
Base content (%) 44.2% 55.8%
Total rRNA-coding genes (size: 2599 bases) GC AT G C A T
Base content (bases) 1191 1408 647 544 573 835
Base content per 1 kb (bases) 458 542 249 209 220 321
Base content (%) 45.8% 54.2%
12S rRNA gene (size: 939 bases) GC AT G C A T
Base content (bases) 441 498 243 198 207 291
Base content per 1 kb (bases) 470 530 259 211 220 310
Base content (%) 47.0% 53.0%
16S rRNA gene (size: 1660 bases) GC AT G C A T
Base content (bases) 750 910 404 346 366 544
Base content per 1 kb (bases) 452 548 243 208 220 328
Base content (%) 45.2% 54.8%

ATP6 (size: 682 bases) GC AT G C A T
Base content (bases) 296 386 206 90 230 156
Base content per 1 kb (bases) 434 566 302 132 337 229
Base content (%) 43.4% 56.6%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 57 111 42 15 56 55
Base content per 1 kb (bases) 339 661 250 89 333 327
Base content (%) 33.9% 66.1%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 669 882 404 265 506 376
Base content per 1 kb (bases) 431 569 260 171 326 242
Base content (%) 43.1% 56.9%
COX2 (size: 691 bases) GC AT G C A T
Base content (bases) 283 408 177 106 215 193
Base content per 1 kb (bases) 410 590 256 153 311 279
Base content (%) 41.0% 59.0%
COX3 (size: 785 bases) GC AT G C A T
Base content (bases) 340 445 217 123 251 194
Base content per 1 kb (bases) 433 567 276 157 320 247
Base content (%) 43.3% 56.7%
CYTB (size: 1137 bases) GC AT G C A T
Base content (bases) 452 685 297 155 389 296
Base content per 1 kb (bases) 398 602 261 136 342 260
Base content (%) 39.8% 60.2%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 436 539 291 145 313 226
Base content per 1 kb (bases) 447 553 298 149 321 232
Base content (%) 44.7% 55.3%
ND2 (size: 1050 bases) GC AT G C A T
Base content (bases) 458 592 327 131 328 264
Base content per 1 kb (bases) 436 564 311 125 312 251
Base content (%) 43.6% 56.4%
ND3 (size: 349 bases) GC AT G C A T
Base content (bases) 152 197 108 44 121 76
Base content per 1 kb (bases) 436 564 309 126 347 218
Base content (%) 43.6% 56.4%
ND4 (size: 1381 bases) GC AT G C A T
Base content (bases) 584 797 389 195 423 374
Base content per 1 kb (bases) 423 577 282 141 306 271
Base content (%) 42.3% 57.7%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 138 159 97 41 95 64
Base content per 1 kb (bases) 465 535 327 138 320 215
Base content (%) 46.5% 53.5%
ND5 (size: 1839 bases) GC AT G C A T
Base content (bases) 741 1098 512 229 594 504
Base content per 1 kb (bases) 403 597 278 125 323 274
Base content (%) 40.3% 59.7%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 227 295 159 68 91 204
Base content per 1 kb (bases) 435 565 305 130 174 391
Base content (%) 43.5% 56.5%

ATP6 (size: 682 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.98%)
Alanine (Ala, A)
n = 20 (8.85%)
Serine (Ser, S)
n = 10 (4.42%)
Threonine (Thr, T)
n = 18 (7.96%)
Cysteine (Cys, C)
n = 1 (0.44%)
Valine (Val, V)
n = 14 (6.19%)
Leucine (Leu, L)
n = 54 (23.89%)
Isoleucine (Ile, I)
n = 22 (9.73%)
Methionine (Met, M)
n = 8 (3.54%)
Proline (Pro, P)
n = 16 (7.08%)
Phenylalanine (Phe, F)
n = 14 (6.19%)
Tyrosine (Tyr, Y)
n = 4 (1.77%)
Tryptophan (Trp, W)
n = 5 (2.21%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.77%)
Asparagine (Asn, N)
n = 9 (3.98%)
Glutamine (Gln, Q)
n = 8 (3.54%)
Histidine (His, H)
n = 3 (1.33%)
Lysine (Lys, K)
n = 1 (0.44%)
Arginine (Arg, R)
n = 6 (2.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 8 7 17 13 11 4 7 5 3 6 4 2 2 10 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 0 5 10 4 1 1 6 1 1 8 4 4 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 8 0 1 2 2 0 2 3 3 1 1 2 6 3 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 4 0 0 1 1 0 1 1 3 1 0 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
48 78 63 38
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
26 59 30 112
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 69 63 79
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFSILIFSWLVFLIVIPPKMLNHTFINEPAPQNTEKPKTEPWSWPWY*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 2 (3.64%)
Serine (Ser, S)
n = 3 (5.45%)
Threonine (Thr, T)
n = 3 (5.45%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (3.64%)
Leucine (Leu, L)
n = 5 (9.09%)
Isoleucine (Ile, I)
n = 5 (9.09%)
Methionine (Met, M)
n = 2 (3.64%)
Proline (Pro, P)
n = 10 (18.18%)
Phenylalanine (Phe, F)
n = 4 (7.27%)
Tyrosine (Tyr, Y)
n = 1 (1.82%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 3 (5.45%)
Asparagine (Asn, N)
n = 4 (7.27%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 1 (1.82%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 0 1 4 0 1 0 0 2 0 0 0 2 0 4 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 2 0 0 0 0 0 0 4 2 4 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 0 2 0 0 0 0 1 0 1 0 0 4 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 2 1 0 0 3 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
7 18 18 13
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 17 15 18
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
2 7 22 25
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 46 (8.91%)
Serine (Ser, S)
n = 32 (6.2%)
Threonine (Thr, T)
n = 35 (6.78%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 37 (7.17%)
Leucine (Leu, L)
n = 63 (12.21%)
Isoleucine (Ile, I)
n = 43 (8.33%)
Methionine (Met, M)
n = 24 (4.65%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 14 (2.71%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
31 12 19 16 11 16 7 11 6 2 10 9 15 3 29 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 0 14 20 11 1 7 19 17 4 12 10 2 4 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 9 3 10 9 9 0 2 2 12 6 0 2 11 4 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 9 2 4 10 8 0 3 2 3 0 0 0 1 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
155 113 129 120
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 137 94 209
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
33 154 153 177
COX2 (size: 691 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.49%)
Alanine (Ala, A)
n = 15 (6.55%)
Serine (Ser, S)
n = 16 (6.99%)
Threonine (Thr, T)
n = 13 (5.68%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 19 (8.3%)
Leucine (Leu, L)
n = 32 (13.97%)
Isoleucine (Ile, I)
n = 18 (7.86%)
Methionine (Met, M)
n = 10 (4.37%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 8 (3.49%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 14 (6.11%)
Asparagine (Asn, N)
n = 4 (1.75%)
Glutamine (Gln, Q)
n = 9 (3.93%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 5 (2.18%)
Arginine (Arg, R)
n = 6 (2.62%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 0 8 8 7 8 2 7 7 2 8 2 5 4 6 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 0 4 5 6 0 2 3 2 1 3 9 1 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 6 0 4 7 2 0 0 3 5 4 0 0 4 0 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 13 1 7 6 5 0 4 1 1 0 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
69 64 53 44
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
24 55 64 87
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 58 76 83
COX3 (size: 785 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 22 (8.46%)
Serine (Ser, S)
n = 14 (5.38%)
Threonine (Thr, T)
n = 24 (9.23%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 15 (5.77%)
Leucine (Leu, L)
n = 33 (12.69%)
Isoleucine (Ile, I)
n = 16 (6.15%)
Methionine (Met, M)
n = 7 (2.69%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 24 (9.23%)
Tyrosine (Tyr, Y)
n = 11 (4.23%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 10 (3.85%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 4 5 7 5 11 0 10 10 0 5 2 7 1 18 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 8 8 6 0 3 10 5 3 2 10 1 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 6 1 3 6 2 0 1 2 7 4 2 0 1 0 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 8 0 1 4 2 0 1 0 4 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 67 53 70
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 70 53 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 80 87 85
CYTB (size: 1137 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.88%)
Alanine (Ala, A)
n = 26 (6.88%)
Serine (Ser, S)
n = 21 (5.56%)
Threonine (Thr, T)
n = 20 (5.29%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 22 (5.82%)
Leucine (Leu, L)
n = 58 (15.34%)
Isoleucine (Ile, I)
n = 40 (10.58%)
Methionine (Met, M)
n = 11 (2.91%)
Proline (Pro, P)
n = 22 (5.82%)
Phenylalanine (Phe, F)
n = 32 (8.47%)
Tyrosine (Tyr, Y)
n = 14 (3.7%)
Tryptophan (Trp, W)
n = 11 (2.91%)
Aspartic acid (Asp, D)
n = 10 (2.65%)
Glutamic acid (Glu, E)
n = 6 (1.59%)
Asparagine (Asn, N)
n = 19 (5.03%)
Glutamine (Gln, Q)
n = 7 (1.85%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 9 (2.38%)
Arginine (Arg, R)
n = 8 (2.12%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
25 15 8 17 9 14 1 15 7 0 8 4 9 1 22 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 2 3 14 8 1 2 11 9 4 7 11 4 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 11 0 12 3 4 1 0 1 8 6 1 2 11 8 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 5 1 3 7 9 0 0 4 4 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
90 90 100 99
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
50 88 78 163
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 119 118 127
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 33 (10.19%)
Serine (Ser, S)
n = 19 (5.86%)
Threonine (Thr, T)
n = 24 (7.41%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 19 (5.86%)
Leucine (Leu, L)
n = 69 (21.3%)
Isoleucine (Ile, I)
n = 13 (4.01%)
Methionine (Met, M)
n = 15 (4.63%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 20 (6.17%)
Tyrosine (Tyr, Y)
n = 11 (3.4%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 10 (3.09%)
Asparagine (Asn, N)
n = 10 (3.09%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 6 (1.85%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 2 12 25 14 9 3 15 6 0 7 2 7 3 12 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 10 13 9 1 2 10 4 2 8 14 2 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 6 1 6 5 5 0 1 2 7 4 2 3 8 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 8 2 2 2 7 0 0 2 3 3 0 0 0 1 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
84 95 72 74
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
37 97 55 136
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
24 99 99 103
ND2 (size: 1050 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.3%)
Alanine (Ala, A)
n = 34 (9.74%)
Serine (Ser, S)
n = 31 (8.88%)
Threonine (Thr, T)
n = 38 (10.89%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 13 (3.72%)
Leucine (Leu, L)
n = 73 (20.92%)
Isoleucine (Ile, I)
n = 23 (6.59%)
Methionine (Met, M)
n = 17 (4.87%)
Proline (Pro, P)
n = 25 (7.16%)
Phenylalanine (Phe, F)
n = 16 (4.58%)
Tyrosine (Tyr, Y)
n = 8 (2.29%)
Tryptophan (Trp, W)
n = 11 (3.15%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.43%)
Asparagine (Asn, N)
n = 6 (1.72%)
Glutamine (Gln, Q)
n = 12 (3.44%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 8 (2.29%)
Arginine (Arg, R)
n = 5 (1.43%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 4 13 19 15 13 4 21 9 3 4 0 8 1 12 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 0 8 21 5 0 2 8 3 2 9 11 4 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 15 2 8 11 6 0 0 6 6 2 4 1 4 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 5 0 1 0 7 1 1 1 2 1 0 0 0 1 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 100 98 84
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 122 48 142
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 105 118 102
ND3 (size: 1050 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.3%)
Alanine (Ala, A)
n = 34 (9.74%)
Serine (Ser, S)
n = 31 (8.88%)
Threonine (Thr, T)
n = 38 (10.89%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 13 (3.72%)
Leucine (Leu, L)
n = 73 (20.92%)
Isoleucine (Ile, I)
n = 23 (6.59%)
Methionine (Met, M)
n = 17 (4.87%)
Proline (Pro, P)
n = 25 (7.16%)
Phenylalanine (Phe, F)
n = 16 (4.58%)
Tyrosine (Tyr, Y)
n = 8 (2.29%)
Tryptophan (Trp, W)
n = 11 (3.15%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.43%)
Asparagine (Asn, N)
n = 6 (1.72%)
Glutamine (Gln, Q)
n = 12 (3.44%)
Histidine (His, H)
n = 7 (2.01%)
Lysine (Lys, K)
n = 8 (2.29%)
Arginine (Arg, R)
n = 5 (1.43%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 4 13 19 15 13 4 21 9 3 4 0 8 1 12 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 0 8 21 5 0 2 8 3 2 9 11 4 1 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 15 2 8 11 6 0 0 6 6 2 4 1 4 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 5 0 1 0 7 1 1 1 2 1 0 0 0 1 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 100 98 84
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 122 48 142
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
25 105 118 102
ND4 (size: 1381 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (5.45%)
Alanine (Ala, A)
n = 37 (8.06%)
Serine (Ser, S)
n = 27 (5.88%)
Threonine (Thr, T)
n = 41 (8.93%)
Cysteine (Cys, C)
n = 6 (1.31%)
Valine (Val, V)
n = 18 (3.92%)
Leucine (Leu, L)
n = 94 (20.48%)
Isoleucine (Ile, I)
n = 33 (7.19%)
Methionine (Met, M)
n = 28 (6.1%)
Proline (Pro, P)
n = 27 (5.88%)
Phenylalanine (Phe, F)
n = 19 (4.14%)
Tyrosine (Tyr, Y)
n = 15 (3.27%)
Tryptophan (Trp, W)
n = 19 (4.14%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 11 (2.4%)
Asparagine (Asn, N)
n = 12 (2.61%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 10 (2.18%)
Lysine (Lys, K)
n = 12 (2.61%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 12 22 25 16 18 6 26 10 1 8 5 4 1 11 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 5 12 17 8 0 3 10 5 7 10 12 5 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 17 3 6 9 4 0 2 6 8 7 0 3 7 5 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 9 2 0 4 11 1 1 2 7 1 0 0 0 0 19
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
95 124 134 107
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
69 124 75 192
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
31 141 165 123
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 13 (13.27%)
Serine (Ser, S)
n = 10 (10.2%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 8 (8.16%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 1 (1.02%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 5 8 5 5 0 5 3 0 1 0 1 0 5 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 3 0 1 10 2 0 0 4 1 0 0 1 1 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 2 0 4 1 2 0 0 3 0 0 0 0 1 0 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 2 1 0 1 0 0 1 2 0 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
24 30 20 25
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
15 30 13 41
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
2 37 31 29
ND5 (size: 1839 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 32 (5.23%)
Alanine (Ala, A)
n = 51 (8.33%)
Serine (Ser, S)
n = 48 (7.84%)
Threonine (Thr, T)
n = 54 (8.82%)
Cysteine (Cys, C)
n = 6 (0.98%)
Valine (Val, V)
n = 21 (3.43%)
Leucine (Leu, L)
n = 105 (17.16%)
Isoleucine (Ile, I)
n = 53 (8.66%)
Methionine (Met, M)
n = 24 (3.92%)
Proline (Pro, P)
n = 28 (4.58%)
Phenylalanine (Phe, F)
n = 47 (7.68%)
Tyrosine (Tyr, Y)
n = 10 (1.63%)
Tryptophan (Trp, W)
n = 14 (2.29%)
Aspartic acid (Asp, D)
n = 10 (1.63%)
Glutamic acid (Glu, E)
n = 13 (2.12%)
Asparagine (Asn, N)
n = 34 (5.56%)
Glutamine (Gln, Q)
n = 16 (2.61%)
Histidine (His, H)
n = 16 (2.61%)
Lysine (Lys, K)
n = 21 (3.43%)
Arginine (Arg, R)
n = 9 (1.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
37 16 17 35 20 24 2 23 16 0 8 1 9 3 30 17
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 5 1 12 29 10 0 3 11 11 7 4 19 3 2 15
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
22 16 1 15 12 8 0 3 10 5 5 2 1 23 11 7
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 11 2 4 6 21 0 1 5 2 1 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
127 150 199 137
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
74 168 121 250
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
28 194 184 207
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 23 (13.29%)
Alanine (Ala, A)
n = 19 (10.98%)
Serine (Ser, S)
n = 10 (5.78%)
Threonine (Thr, T)
n = 7 (4.05%)
Cysteine (Cys, C)
n = 3 (1.73%)
Valine (Val, V)
n = 20 (11.56%)
Leucine (Leu, L)
n = 38 (21.97%)
Isoleucine (Ile, I)
n = 6 (3.47%)
Methionine (Met, M)
n = 2 (1.16%)
Proline (Pro, P)
n = 4 (2.31%)
Phenylalanine (Phe, F)
n = 9 (5.2%)
Tyrosine (Tyr, Y)
n = 8 (4.62%)
Tryptophan (Trp, W)
n = 7 (4.05%)
Aspartic acid (Asp, D)
n = 3 (1.73%)
Glutamic acid (Glu, E)
n = 6 (3.47%)
Asparagine (Asn, N)
n = 2 (1.16%)
Glutamine (Gln, Q)
n = 1 (0.58%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 4 (2.31%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 1 0 8 0 2 1 18 0 1 12 0 5 3 9 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 1 9 0 6 4 2 4 6 11 2 1 1 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 1 6 5 0 2 0 3 0 6 2 2 9 0 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 5 3 0 0 1 1 0 0 3 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
71 20 21 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
40 37 22 75
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
48 11 48 67
Total protein-coding genes (size: 11427 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 234 (6.15%)
Alanine (Ala, A)
n = 325 (8.54%)
Serine (Ser, S)
n = 249 (6.54%)
Threonine (Thr, T)
n = 297 (7.8%)
Cysteine (Cys, C)
n = 30 (0.79%)
Valine (Val, V)
n = 206 (5.41%)
Leucine (Leu, L)
n = 673 (17.68%)
Isoleucine (Ile, I)
n = 282 (7.41%)
Methionine (Met, M)
n = 157 (4.13%)
Proline (Pro, P)
n = 222 (5.83%)
Phenylalanine (Phe, F)
n = 252 (6.62%)
Tyrosine (Tyr, Y)
n = 111 (2.92%)
Tryptophan (Trp, W)
n = 120 (3.15%)
Aspartic acid (Asp, D)
n = 69 (1.81%)
Glutamic acid (Glu, E)
n = 100 (2.63%)
Asparagine (Asn, N)
n = 119 (3.13%)
Glutamine (Gln, Q)
n = 96 (2.52%)
Histidine (His, H)
n = 104 (2.73%)
Lysine (Lys, K)
n = 78 (2.05%)
Arginine (Arg, R)
n = 75 (1.97%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
205 77 119 195 124 137 30 164 83 13 79 30 74 23 176 76
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
38 20 10 88 153 76 8 28 98 65 43 72 109 33 8 59
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
120 101 17 81 67 46 1 14 40 69 42 14 23 81 38 39
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
65 82 18 26 43 75 3 15 21 29 10 0 0 6 2 106
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
934 983 987 903
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
513 1039 685 1570
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
251 1113 1196 1247 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​D​a​l​l​i​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ p​e​c​t​o​r​a​l​i​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.