Viewing data for Polyplectron napoleonis


Scientific name Polyplectron napoleonis
Common name Palawan peacock pheasant
Maximum lifespan 15.00 years (Polyplectron napoleonis@AnAge)

Total mtDNA (size: 16710 bases) GC AT G C A T
Base content (bases) 7788 8919 5396 2392 3991 4928
Base content per 1 kb (bases) 466 534 323 143 239 295
Base content (%) 46.6% 53.4%
Total protein-coding genes (size: 11373 bases) GC AT G C A T
Base content (bases) 5394 5977 3924 1470 2715 3262
Base content per 1 kb (bases) 474 526 345 129 239 287
Base content (%) 47.4% 52.6%
D-loop (size: 1169 bases) GC AT G C A T
Base content (bases) 479 690 312 167 378 312
Base content per 1 kb (bases) 410 590 267 143 323 267
Base content (%) 41.0% 59.0%
Total tRNA-coding genes (size: 1552 bases) GC AT G C A T
Base content (bases) 680 872 405 275 378 494
Base content per 1 kb (bases) 438 562 261 177 244 318
Base content (%) 43.8% 56.2%
Total rRNA-coding genes (size: 2572 bases) GC AT G C A T
Base content (bases) 1217 1354 738 479 516 838
Base content per 1 kb (bases) 473 526 287 186 201 326
Base content (%) 47.3% 52.6%
12S rRNA gene (size: 974 bases) GC AT G C A T
Base content (bases) 487 487 302 185 181 306
Base content per 1 kb (bases) 500 500 310 190 186 314
Base content (%) 50.0% 50.0%
16S rRNA gene (size: 1598 bases) GC AT G C A T
Base content (bases) 730 867 436 294 335 532
Base content per 1 kb (bases) 457 543 273 184 210 333
Base content (%) 45.7% 54.3%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 329 355 257 72 175 180
Base content per 1 kb (bases) 481 519 376 105 256 263
Base content (%) 48.1% 51.9%
ATP8 (size: 165 bases) GC AT G C A T
Base content (bases) 74 91 65 9 32 59
Base content per 1 kb (bases) 448 552 394 55 194 358
Base content (%) 44.8% 55.2%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 736 815 471 265 405 410
Base content per 1 kb (bases) 475 525 304 171 261 264
Base content (%) 47.5% 52.5%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 318 366 212 106 164 202
Base content per 1 kb (bases) 465 535 310 155 240 295
Base content (%) 46.5% 53.5%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 372 412 246 126 195 217
Base content per 1 kb (bases) 474 526 314 161 249 277
Base content (%) 47.4% 52.6%
CYTB (size: 1143 bases) GC AT G C A T
Base content (bases) 556 587 403 153 286 301
Base content per 1 kb (bases) 486 514 353 134 250 263
Base content (%) 48.6% 51.4%
ND1 (size: 975 bases) GC AT G C A T
Base content (bases) 476 499 344 132 247 252
Base content per 1 kb (bases) 488 512 353 135 253 258
Base content (%) 48.8% 51.2%
ND2 (size: 1039 bases) GC AT G C A T
Base content (bases) 473 566 376 97 248 318
Base content per 1 kb (bases) 455 545 362 93 239 306
Base content (%) 45.5% 54.5%
ND3 (size: 351 bases) GC AT G C A T
Base content (bases) 168 183 125 43 92 91
Base content per 1 kb (bases) 479 521 356 123 262 259
Base content (%) 47.9% 52.1%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 633 745 479 154 326 419
Base content per 1 kb (bases) 459 541 348 112 237 304
Base content (%) 45.9% 54.1%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 146 150 106 40 74 76
Base content per 1 kb (bases) 492 505 357 135 249 256
Base content (%) 49.2% 50.5%
ND5 (size: 1818 bases) GC AT G C A T
Base content (bases) 863 954 645 218 418 536
Base content per 1 kb (bases) 475 525 355 120 230 295
Base content (%) 47.5% 52.5%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 254 268 197 57 58 210
Base content per 1 kb (bases) 487 513 377 109 111 402
Base content (%) 48.7% 51.3%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.96%)
Alanine (Ala, A)
n = 16 (7.05%)
Serine (Ser, S)
n = 15 (6.61%)
Threonine (Thr, T)
n = 21 (9.25%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 7 (3.08%)
Leucine (Leu, L)
n = 65 (28.63%)
Isoleucine (Ile, I)
n = 19 (8.37%)
Methionine (Met, M)
n = 7 (3.08%)
Proline (Pro, P)
n = 18 (7.93%)
Phenylalanine (Phe, F)
n = 7 (3.08%)
Tyrosine (Tyr, Y)
n = 4 (1.76%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 5 (2.2%)
Lysine (Lys, K)
n = 3 (1.32%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 13 3 6 23 24 4 8 8 0 2 2 3 0 3 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 1 12 3 0 2 3 2 2 1 7 9 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 7 0 4 5 2 0 0 4 0 4 0 0 1 8 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 2 0 1 3 0 0 2 3 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
37 93 63 35
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
22 66 35 105
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 98 82 35
ATP8 (size: 165 bases)
Amino acid sequence: MPQLNPNPWFTIMLLTWFTFSLLIQPKLLSFIPTNNPTDKTTTTKPTPWTWPWT*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 0 (0%)
Serine (Ser, S)
n = 2 (3.7%)
Threonine (Thr, T)
n = 12 (22.22%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 7 (12.96%)
Isoleucine (Ile, I)
n = 3 (5.56%)
Methionine (Met, M)
n = 2 (3.7%)
Proline (Pro, P)
n = 9 (16.67%)
Phenylalanine (Phe, F)
n = 4 (7.41%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.26%)
Aspartic acid (Asp, D)
n = 1 (1.85%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 4 (7.41%)
Glutamine (Gln, Q)
n = 2 (3.7%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 3 (5.56%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 2 1 0 4 2 1 0 2 0 0 0 0 0 2 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 0 0 0 0 0 0 0 0 5 4 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 5 0 0 0 2 0 0 0 0 0 1 0 0 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 0 0 1 3 0 0 0 0 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1 18 24 12
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
5 23 11 16
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 24 24 4
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 44 (8.53%)
Serine (Ser, S)
n = 27 (5.23%)
Threonine (Thr, T)
n = 39 (7.56%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 35 (6.78%)
Leucine (Leu, L)
n = 63 (12.21%)
Isoleucine (Ile, I)
n = 42 (8.14%)
Methionine (Met, M)
n = 25 (4.84%)
Proline (Pro, P)
n = 31 (6.01%)
Phenylalanine (Phe, F)
n = 43 (8.33%)
Tyrosine (Tyr, Y)
n = 17 (3.29%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 9 (1.74%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 23 20 9 14 26 6 6 7 2 5 13 14 3 12 31
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 1 7 20 15 2 5 16 19 7 4 11 15 1 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 13 2 1 11 11 1 0 3 2 15 2 2 3 12 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 8 2 3 12 9 0 1 2 4 1 0 1 0 0 15
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
151 122 134 110
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 138 94 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
37 211 182 87
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 15 (6.61%)
Serine (Ser, S)
n = 19 (8.37%)
Threonine (Thr, T)
n = 15 (6.61%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 16 (7.05%)
Leucine (Leu, L)
n = 31 (13.66%)
Isoleucine (Ile, I)
n = 16 (7.05%)
Methionine (Met, M)
n = 11 (4.85%)
Proline (Pro, P)
n = 13 (5.73%)
Phenylalanine (Phe, F)
n = 8 (3.52%)
Tyrosine (Tyr, Y)
n = 8 (3.52%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 14 (6.17%)
Glutamic acid (Glu, E)
n = 14 (6.17%)
Asparagine (Asn, N)
n = 4 (1.76%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 9 (3.96%)
Lysine (Lys, K)
n = 5 (2.2%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 11 10 4 6 14 4 2 7 1 2 5 6 3 3 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 3 2 8 5 0 0 2 4 2 5 6 2 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 5 0 2 7 8 0 1 1 3 5 0 1 0 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 11 3 5 9 5 0 0 3 2 0 0 0 0 1 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 63 53 45
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
23 60 63 82
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 89 86 37
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 22 (8.46%)
Serine (Ser, S)
n = 18 (6.92%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 15 (5.77%)
Leucine (Leu, L)
n = 33 (12.69%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 11 (4.23%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 9 (3.46%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 5 (1.92%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 18 (6.92%)
Lysine (Lys, K)
n = 4 (1.54%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 12 7 3 7 15 3 4 7 0 2 8 5 0 5 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 4 7 9 2 4 6 9 2 1 4 6 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 11 0 4 4 7 0 0 3 3 6 3 1 2 3 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 7 1 0 4 4 0 0 0 5 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
70 69 57 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 70 55 94
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 107 105 35
CYTB (size: 1143 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.32%)
Alanine (Ala, A)
n = 31 (8.16%)
Serine (Ser, S)
n = 27 (7.11%)
Threonine (Thr, T)
n = 21 (5.53%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 17 (4.47%)
Leucine (Leu, L)
n = 61 (16.05%)
Isoleucine (Ile, I)
n = 32 (8.42%)
Methionine (Met, M)
n = 9 (2.37%)
Proline (Pro, P)
n = 25 (6.58%)
Phenylalanine (Phe, F)
n = 31 (8.16%)
Tyrosine (Tyr, Y)
n = 14 (3.68%)
Tryptophan (Trp, W)
n = 12 (3.16%)
Aspartic acid (Asp, D)
n = 7 (1.84%)
Glutamic acid (Glu, E)
n = 7 (1.84%)
Asparagine (Asn, N)
n = 21 (5.53%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 12 (3.16%)
Lysine (Lys, K)
n = 10 (2.63%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 26 8 9 22 22 3 5 8 0 2 3 10 2 4 27
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 2 3 16 12 0 3 10 7 4 3 8 13 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 5 0 2 14 9 1 0 1 2 12 2 0 4 17 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 6 1 2 5 8 2 1 2 4 1 0 0 0 1 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
86 109 94 92
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
48 103 80 150
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 191 127 44
ND1 (size: 975 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.7%)
Alanine (Ala, A)
n = 29 (8.95%)
Serine (Ser, S)
n = 24 (7.41%)
Threonine (Thr, T)
n = 28 (8.64%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 12 (3.7%)
Leucine (Leu, L)
n = 64 (19.75%)
Isoleucine (Ile, I)
n = 24 (7.41%)
Methionine (Met, M)
n = 14 (4.32%)
Proline (Pro, P)
n = 26 (8.02%)
Phenylalanine (Phe, F)
n = 20 (6.17%)
Tyrosine (Tyr, Y)
n = 12 (3.7%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 13 (4.01%)
Glutamine (Gln, Q)
n = 5 (1.54%)
Histidine (His, H)
n = 2 (0.62%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 15 9 5 22 27 5 5 2 3 2 6 1 3 4 16
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 1 8 17 4 0 1 3 7 1 2 12 12 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 7 2 2 8 7 1 0 6 6 6 1 0 4 9 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 6 5 0 4 4 3 0 2 6 0 0 0 1 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
68 100 92 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 101 55 134
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
29 143 105 48
ND2 (size: 1039 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.48%)
Alanine (Ala, A)
n = 25 (7.25%)
Serine (Ser, S)
n = 29 (8.41%)
Threonine (Thr, T)
n = 49 (14.2%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 8 (2.32%)
Leucine (Leu, L)
n = 71 (20.58%)
Isoleucine (Ile, I)
n = 30 (8.7%)
Methionine (Met, M)
n = 16 (4.64%)
Proline (Pro, P)
n = 21 (6.09%)
Phenylalanine (Phe, F)
n = 12 (3.48%)
Tyrosine (Tyr, Y)
n = 5 (1.45%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 12 (3.48%)
Glutamine (Gln, Q)
n = 10 (2.9%)
Histidine (His, H)
n = 9 (2.61%)
Lysine (Lys, K)
n = 14 (4.06%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 21 15 11 23 26 4 6 7 3 1 3 4 0 3 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 1 3 10 12 0 2 7 2 1 2 13 6 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
24 19 0 3 10 13 0 0 3 1 4 3 1 1 11 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 4 1 1 1 14 0 0 2 2 0 0 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
52 108 124 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 121 57 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 147 137 48
ND3 (size: 1039 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.48%)
Alanine (Ala, A)
n = 25 (7.25%)
Serine (Ser, S)
n = 29 (8.41%)
Threonine (Thr, T)
n = 49 (14.2%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 8 (2.32%)
Leucine (Leu, L)
n = 71 (20.58%)
Isoleucine (Ile, I)
n = 30 (8.7%)
Methionine (Met, M)
n = 16 (4.64%)
Proline (Pro, P)
n = 21 (6.09%)
Phenylalanine (Phe, F)
n = 12 (3.48%)
Tyrosine (Tyr, Y)
n = 5 (1.45%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 12 (3.48%)
Glutamine (Gln, Q)
n = 10 (2.9%)
Histidine (His, H)
n = 9 (2.61%)
Lysine (Lys, K)
n = 14 (4.06%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 21 15 11 23 26 4 6 7 3 1 3 4 0 3 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 1 3 10 12 0 2 7 2 1 2 13 6 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
24 19 0 3 10 13 0 0 3 1 4 3 1 1 11 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 4 1 1 1 14 0 0 2 2 0 0 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
52 108 124 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 121 57 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 147 137 48
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.93%)
Alanine (Ala, A)
n = 32 (6.99%)
Serine (Ser, S)
n = 44 (9.61%)
Threonine (Thr, T)
n = 47 (10.26%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 11 (2.4%)
Leucine (Leu, L)
n = 99 (21.62%)
Isoleucine (Ile, I)
n = 37 (8.08%)
Methionine (Met, M)
n = 29 (6.33%)
Proline (Pro, P)
n = 30 (6.55%)
Phenylalanine (Phe, F)
n = 12 (2.62%)
Tyrosine (Tyr, Y)
n = 14 (3.06%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 2 (0.44%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 13 (2.84%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 14 (3.06%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 29 25 9 24 45 9 10 10 1 2 5 4 0 2 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 2 4 13 15 0 2 5 9 2 5 10 15 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
23 17 0 2 15 14 2 1 10 2 12 3 2 2 11 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 6 3 0 2 10 1 1 2 8 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 153 148 86
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
55 142 74 188
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 184 197 51
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 10 (10.2%)
Serine (Ser, S)
n = 13 (13.27%)
Threonine (Thr, T)
n = 7 (7.14%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 19 (19.39%)
Isoleucine (Ile, I)
n = 5 (5.1%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 4 (4.08%)
Phenylalanine (Phe, F)
n = 7 (7.14%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 3 (3.06%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 6 (6.12%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 5 4 3 3 11 1 1 2 0 0 0 1 0 0 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 2 1 1 2 6 1 1 2 0 1 0 3 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 2 0 4 4 1 0 0 4 0 1 1 0 0 3 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 2 1 0 1 0 0 0 0 2 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
19 32 24 23
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 29 17 38
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 44 34 13
ND5 (size: 1818 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 32 (5.29%)
Alanine (Ala, A)
n = 52 (8.6%)
Serine (Ser, S)
n = 44 (7.27%)
Threonine (Thr, T)
n = 72 (11.9%)
Cysteine (Cys, C)
n = 6 (0.99%)
Valine (Val, V)
n = 15 (2.48%)
Leucine (Leu, L)
n = 107 (17.69%)
Isoleucine (Ile, I)
n = 56 (9.26%)
Methionine (Met, M)
n = 24 (3.97%)
Proline (Pro, P)
n = 34 (5.62%)
Phenylalanine (Phe, F)
n = 29 (4.79%)
Tyrosine (Tyr, Y)
n = 13 (2.15%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 8 (1.32%)
Glutamic acid (Glu, E)
n = 15 (2.48%)
Asparagine (Asn, N)
n = 22 (3.64%)
Glutamine (Gln, Q)
n = 17 (2.81%)
Histidine (His, H)
n = 15 (2.48%)
Lysine (Lys, K)
n = 24 (3.97%)
Arginine (Arg, R)
n = 8 (1.32%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 44 18 14 38 38 3 13 16 1 2 4 6 3 3 26
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 6 7 28 16 1 5 13 12 2 3 16 14 1 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
34 27 2 6 20 9 1 0 8 1 12 5 0 5 17 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 13 2 3 5 22 2 3 1 3 1 0 0 1 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
122 167 206 110
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
66 194 115 230
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
30 283 215 77
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.45%)
Alanine (Ala, A)
n = 16 (9.25%)
Serine (Ser, S)
n = 15 (8.67%)
Threonine (Thr, T)
n = 2 (1.16%)
Cysteine (Cys, C)
n = 4 (2.31%)
Valine (Val, V)
n = 33 (19.08%)
Leucine (Leu, L)
n = 26 (15.03%)
Isoleucine (Ile, I)
n = 3 (1.73%)
Methionine (Met, M)
n = 7 (4.05%)
Proline (Pro, P)
n = 3 (1.73%)
Phenylalanine (Phe, F)
n = 13 (7.51%)
Tyrosine (Tyr, Y)
n = 8 (4.62%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 4 (2.31%)
Glutamic acid (Glu, E)
n = 2 (1.16%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 1 (0.58%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 5 (2.89%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 0 2 2 0 1 4 6 0 1 15 2 3 13 13 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 3 1 5 0 4 7 3 0 5 17 0 2 0 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 0 9 0 0 1 5 0 3 5 4 13 1 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 1 1 4 0 0 0 1 0 0 4 0 1 0 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
80 16 19 59
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
45 31 16 82
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
72 10 23 69
Total protein-coding genes (size: 11393 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 217 (5.72%)
Alanine (Ala, A)
n = 301 (7.93%)
Serine (Ser, S)
n = 286 (7.54%)
Threonine (Thr, T)
n = 349 (9.2%)
Cysteine (Cys, C)
n = 28 (0.74%)
Valine (Val, V)
n = 172 (4.53%)
Leucine (Leu, L)
n = 673 (17.73%)
Isoleucine (Ile, I)
n = 288 (7.59%)
Methionine (Met, M)
n = 161 (4.24%)
Proline (Pro, P)
n = 232 (6.11%)
Phenylalanine (Phe, F)
n = 218 (5.74%)
Tyrosine (Tyr, Y)
n = 107 (2.82%)
Tryptophan (Trp, W)
n = 108 (2.85%)
Aspartic acid (Asp, D)
n = 66 (1.74%)
Glutamic acid (Glu, E)
n = 94 (2.48%)
Asparagine (Asn, N)
n = 124 (3.27%)
Glutamine (Gln, Q)
n = 92 (2.42%)
Histidine (His, H)
n = 109 (2.87%)
Lysine (Lys, K)
n = 91 (2.4%)
Arginine (Arg, R)
n = 71 (1.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
83 205 122 78 200 260 47 67 79 13 35 51 59 27 58 160
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
39 8 20 46 140 102 13 29 70 77 41 27 100 100 5 53
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
164 125 6 40 100 87 8 7 44 25 82 25 20 23 101 29
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
80 72 22 19 47 83 8 7 16 41 7 0 2 5 2 83
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
850 1089 1065 790
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
477 1116 690 1511
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
285 1580 1362 567 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​o​l​y​p​l​e​c​t​r​o​n​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ n​a​p​o​l​e​o​n​i​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.