Viewing data for Cyprinus carpio
| Scientific name | Cyprinus carpio |
| Common name | Common carp |
| Maximum lifespan | 47.00 years (Cyprinus carpio@AnAge) |
| Total mtDNA (size: 16575 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 7170 | 9405 | 4551 | 2619 | 4124 | 5281 |
| Base content per 1 kb (bases) | 433 | 567 | 275 | 158 | 249 | 319 |
| Base content (%) | 43.3% | 56.7% | ||||
| Total protein-coding genes (size: 11393 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 4957 | 6436 | 3319 | 1638 | 2891 | 3545 |
| Base content per 1 kb (bases) | 435 | 565 | 291 | 144 | 254 | 311 |
| Base content (%) | 43.5% | 56.5% | ||||
D-loop:
No data available for this section.
| Total tRNA-coding genes (size: 1560 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 682 | 878 | 378 | 304 | 393 | 485 |
| Base content per 1 kb (bases) | 437 | 563 | 242 | 195 | 252 | 311 |
| Base content (%) | 43.7% | 56.3% | ||||
| Total rRNA-coding genes (size: 2632 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1192 | 1440 | 653 | 539 | 516 | 924 |
| Base content per 1 kb (bases) | 453 | 547 | 248 | 205 | 196 | 351 |
| Base content (%) | 45.3% | 54.7% | ||||
| 12S rRNA gene (size: 951 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 460 | 491 | 256 | 204 | 182 | 309 |
| Base content per 1 kb (bases) | 484 | 516 | 269 | 215 | 191 | 325 |
| Base content (%) | 48.4% | 51.6% | ||||
| 16S rRNA gene (size: 1681 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 732 | 949 | 397 | 335 | 334 | 615 |
| Base content per 1 kb (bases) | 435 | 565 | 236 | 199 | 199 | 366 |
| Base content (%) | 43.5% | 56.5% | ||||
| ATP6 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 284 | 400 | 193 | 91 | 187 | 213 |
| Base content per 1 kb (bases) | 415 | 585 | 282 | 133 | 273 | 311 |
| Base content (%) | 41.5% | 58.5% | ||||
| ATP8 (size: 165 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 59 | 106 | 40 | 19 | 48 | 58 |
| Base content per 1 kb (bases) | 358 | 642 | 242 | 115 | 291 | 352 |
| Base content (%) | 35.8% | 64.2% | ||||
| COX1 (size: 1551 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 686 | 865 | 413 | 273 | 440 | 425 |
| Base content per 1 kb (bases) | 442 | 558 | 266 | 176 | 284 | 274 |
| Base content (%) | 44.2% | 55.8% | ||||
| COX2 (size: 691 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 298 | 393 | 183 | 115 | 183 | 210 |
| Base content per 1 kb (bases) | 431 | 569 | 265 | 166 | 265 | 304 |
| Base content (%) | 43.1% | 56.9% | ||||
| COX3 (size: 786 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 346 | 440 | 222 | 124 | 213 | 227 |
| Base content per 1 kb (bases) | 440 | 560 | 282 | 158 | 271 | 289 |
| Base content (%) | 44.0% | 56.0% | ||||
| CYTB (size: 1141 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 503 | 638 | 342 | 161 | 299 | 339 |
| Base content per 1 kb (bases) | 441 | 559 | 300 | 141 | 262 | 297 |
| Base content (%) | 44.1% | 55.9% | ||||
| ND1 (size: 975 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 433 | 542 | 296 | 137 | 242 | 300 |
| Base content per 1 kb (bases) | 444 | 556 | 304 | 141 | 248 | 308 |
| Base content (%) | 44.4% | 55.6% | ||||
| ND2 (size: 1047 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 469 | 578 | 332 | 137 | 227 | 351 |
| Base content per 1 kb (bases) | 448 | 552 | 317 | 131 | 217 | 335 |
| Base content (%) | 44.8% | 55.2% | ||||
| ND3 (size: 351 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 153 | 198 | 103 | 50 | 94 | 104 |
| Base content per 1 kb (bases) | 436 | 564 | 293 | 142 | 268 | 296 |
| Base content (%) | 43.6% | 56.4% | ||||
| ND4 (size: 1381 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 593 | 788 | 401 | 192 | 360 | 428 |
| Base content per 1 kb (bases) | 429 | 571 | 290 | 139 | 261 | 310 |
| Base content (%) | 42.9% | 57.1% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 136 | 161 | 89 | 47 | 83 | 78 |
| Base content per 1 kb (bases) | 458 | 542 | 300 | 158 | 279 | 263 |
| Base content (%) | 45.8% | 54.2% | ||||
| ND5 (size: 1824 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 774 | 1050 | 542 | 232 | 448 | 602 |
| Base content per 1 kb (bases) | 424 | 576 | 297 | 127 | 246 | 330 |
| Base content (%) | 42.4% | 57.6% | ||||
| ND6 (size: 519 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 227 | 292 | 164 | 63 | 73 | 219 |
| Base content per 1 kb (bases) | 437 | 563 | 316 | 121 | 141 | 422 |
| Base content (%) | 43.7% | 56.3% | ||||
| ATP6 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%) 
Alanine (Ala, A)
n = 21 (9.25%) 
Serine (Ser, S)
n = 7 (3.08%) 
Threonine (Thr, T)
n = 18 (7.93%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 17 (7.49%) 
Leucine (Leu, L)
n = 46 (20.26%) 
Isoleucine (Ile, I)
n = 24 (10.57%) 
Methionine (Met, M)
n = 10 (4.41%) 
Proline (Pro, P)
n = 18 (7.93%) 
Phenylalanine (Phe, F)
n = 11 (4.85%) 
Tyrosine (Tyr, Y)
n = 5 (2.2%) 
Tryptophan (Trp, W)
n = 5 (2.2%) 
Aspartic acid (Asp, D)
n = 1 (0.44%) 
Glutamic acid (Glu, E)
n = 4 (1.76%) 
Asparagine (Asn, N)
n = 11 (4.85%) 
Glutamine (Gln, Q)
n = 8 (3.52%) 
Histidine (His, H)
n = 3 (1.32%) 
Lysine (Lys, K)
n = 1 (0.44%) 
Arginine (Arg, R)
n = 6 (2.64%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 11 | 13 | 7 | 5 | 8 | 25 | 3 | 5 | 8 | 0 | 3 | 3 | 10 | 1 | 7 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 0 | 6 | 7 | 8 | 0 | 1 | 1 | 8 | 1 | 2 | 4 | 11 | 1 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 4 | 11 | 1 | 0 | 0 | 3 | 0 | 0 | 4 | 4 | 1 | 0 | 0 | 7 | 4 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 4 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 4 | 1 | 0 | 0 | 1 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 54 | 76 | 68 | 30 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 26 | 60 | 34 | 108 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 11 | 57 | 111 | 49 | ||||||||||||
| ATP8 (size: 165 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLNPGPWFAILVFSWLIFLTIIPTKILSHISPNEPTPVSAEKHKTESWDWPW* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.85%)
Alanine (Ala, A)
n = 2 (3.7%)
Serine (Ser, S)
n = 5 (9.26%)
Threonine (Thr, T)
n = 4 (7.41%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (3.7%)
Leucine (Leu, L)
n = 5 (9.26%)
Isoleucine (Ile, I)
n = 6 (11.11%)
Methionine (Met, M)
n = 1 (1.85%)
Proline (Pro, P)
n = 8 (14.81%)
Phenylalanine (Phe, F)
n = 3 (5.56%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.26%)
Aspartic acid (Asp, D)
n = 1 (1.85%)
Glutamic acid (Glu, E)
n = 3 (5.56%)
Asparagine (Asn, N)
n = 2 (3.7%)
Glutamine (Gln, Q)
n = 1 (1.85%)
Histidine (His, H)
n = 2 (3.7%)
Lysine (Lys, K)
n = 3 (5.56%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 5 | 1 | 0 | 0 | 0 | 1 | 0 | 4 | 1 | 0 | 0 | 0 | 2 | 0 | 1 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 6 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 0 | 0 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 3 | 0 | 0 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 9 | 12 | 18 | 16 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 8 | 17 | 13 | 17 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 2 | 11 | 27 | 15 | ||||||||||||
| COX1 (size: 1551 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 44 (8.53%)
Alanine (Ala, A)
n = 46 (8.91%)
Serine (Ser, S)
n = 35 (6.78%)
Threonine (Thr, T)
n = 35 (6.78%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 43 (8.33%)
Leucine (Leu, L)
n = 64 (12.4%)
Isoleucine (Ile, I)
n = 38 (7.36%)
Methionine (Met, M)
n = 23 (4.46%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 40 (7.75%)
Tyrosine (Tyr, Y)
n = 19 (3.68%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 14 (2.71%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 8 (1.55%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 21 | 17 | 12 | 17 | 12 | 25 | 2 | 7 | 8 | 0 | 10 | 4 | 24 | 5 | 14 | 26 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 11 | 0 | 1 | 9 | 19 | 17 | 1 | 8 | 5 | 24 | 7 | 6 | 5 | 15 | 2 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 19 | 2 | 4 | 9 | 12 | 2 | 1 | 7 | 11 | 8 | 1 | 1 | 6 | 9 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 17 | 10 | 1 | 3 | 11 | 8 | 0 | 0 | 1 | 5 | 2 | 0 | 0 | 1 | 0 | 16 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 158 | 119 | 127 | 113 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 78 | 136 | 95 | 208 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 37 | 158 | 203 | 119 | ||||||||||||
| COX2 (size: 691 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 18 (7.86%)
Serine (Ser, S)
n = 15 (6.55%)
Threonine (Thr, T)
n = 10 (4.37%)
Cysteine (Cys, C)
n = 2 (0.87%)
Valine (Val, V)
n = 21 (9.17%)
Leucine (Leu, L)
n = 29 (12.66%)
Isoleucine (Ile, I)
n = 16 (6.99%)
Methionine (Met, M)
n = 13 (5.68%)
Proline (Pro, P)
n = 14 (6.11%)
Phenylalanine (Phe, F)
n = 8 (3.49%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 12 (5.24%)
Glutamic acid (Glu, E)
n = 15 (6.55%)
Asparagine (Asn, N)
n = 6 (2.62%)
Glutamine (Gln, Q)
n = 7 (3.06%)
Histidine (His, H)
n = 10 (4.37%)
Lysine (Lys, K)
n = 5 (2.18%)
Arginine (Arg, R)
n = 6 (2.62%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 12 | 4 | 10 | 7 | 2 | 11 | 4 | 5 | 7 | 0 | 6 | 5 | 8 | 2 | 3 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 1 | 3 | 8 | 6 | 1 | 1 | 1 | 6 | 1 | 2 | 3 | 9 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 2 | 3 | 1 | 3 | 6 | 3 | 0 | 1 | 2 | 5 | 4 | 0 | 0 | 4 | 2 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 9 | 13 | 2 | 0 | 12 | 4 | 1 | 1 | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 75 | 61 | 53 | 41 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 25 | 54 | 64 | 87 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 15 | 68 | 93 | 54 | ||||||||||||
| COX3 (size: 786 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.05%)
Alanine (Ala, A)
n = 23 (8.81%)
Serine (Ser, S)
n = 14 (5.36%)
Threonine (Thr, T)
n = 22 (8.43%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 15 (5.75%)
Leucine (Leu, L)
n = 33 (12.64%)
Isoleucine (Ile, I)
n = 16 (6.13%)
Methionine (Met, M)
n = 8 (3.07%)
Proline (Pro, P)
n = 13 (4.98%)
Phenylalanine (Phe, F)
n = 22 (8.43%)
Tyrosine (Tyr, Y)
n = 12 (4.6%)
Tryptophan (Trp, W)
n = 12 (4.6%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 10 (3.83%)
Asparagine (Asn, N)
n = 1 (0.38%)
Glutamine (Gln, Q)
n = 9 (3.45%)
Histidine (His, H)
n = 16 (6.13%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 8 | 8 | 6 | 6 | 6 | 14 | 1 | 6 | 9 | 0 | 4 | 2 | 9 | 0 | 6 | 16 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 2 | 5 | 10 | 8 | 0 | 2 | 4 | 12 | 3 | 2 | 3 | 7 | 1 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 14 | 0 | 2 | 3 | 6 | 0 | 0 | 3 | 5 | 7 | 0 | 0 | 1 | 0 | 7 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 9 | 10 | 0 | 3 | 2 | 2 | 0 | 1 | 1 | 3 | 0 | 0 | 0 | 1 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 74 | 70 | 52 | 66 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 43 | 69 | 56 | 94 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 7 | 83 | 119 | 53 | ||||||||||||
| CYTB (size: 1141 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 25 (6.6%)
Alanine (Ala, A)
n = 30 (7.92%)
Serine (Ser, S)
n = 22 (5.8%)
Threonine (Thr, T)
n = 23 (6.07%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 24 (6.33%)
Leucine (Leu, L)
n = 60 (15.83%)
Isoleucine (Ile, I)
n = 32 (8.44%)
Methionine (Met, M)
n = 13 (3.43%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 30 (7.92%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 17 (4.49%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 16 | 16 | 8 | 6 | 9 | 36 | 3 | 6 | 6 | 0 | 6 | 6 | 12 | 0 | 5 | 25 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 0 | 3 | 3 | 10 | 16 | 1 | 3 | 6 | 14 | 2 | 3 | 4 | 12 | 2 | 0 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 11 | 12 | 0 | 3 | 6 | 12 | 0 | 0 | 1 | 1 | 13 | 1 | 0 | 4 | 13 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 11 | 5 | 1 | 0 | 11 | 10 | 0 | 1 | 1 | 6 | 0 | 0 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 96 | 101 | 96 | 87 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 50 | 95 | 76 | 159 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 15 | 146 | 167 | 52 | ||||||||||||
| ND1 (size: 975 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.56%)
Alanine (Ala, A)
n = 34 (10.49%)
Serine (Ser, S)
n = 21 (6.48%)
Threonine (Thr, T)
n = 19 (5.86%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 21 (6.48%)
Leucine (Leu, L)
n = 62 (19.14%)
Isoleucine (Ile, I)
n = 23 (7.1%)
Methionine (Met, M)
n = 11 (3.4%)
Proline (Pro, P)
n = 24 (7.41%)
Phenylalanine (Phe, F)
n = 17 (5.25%)
Tyrosine (Tyr, Y)
n = 12 (3.7%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.4%)
Asparagine (Asn, N)
n = 12 (3.7%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 5 (1.54%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 9 | 14 | 9 | 7 | 11 | 33 | 1 | 10 | 7 | 0 | 1 | 2 | 17 | 1 | 5 | 12 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 0 | 0 | 21 | 12 | 1 | 0 | 3 | 13 | 2 | 5 | 7 | 12 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 5 | 9 | 1 | 1 | 4 | 10 | 2 | 0 | 4 | 7 | 5 | 0 | 0 | 3 | 9 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 11 | 0 | 0 | 4 | 7 | 0 | 0 | 1 | 6 | 1 | 0 | 0 | 1 | 0 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 88 | 96 | 76 | 65 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 38 | 94 | 59 | 134 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 11 | 106 | 165 | 43 | ||||||||||||
| ND2 (size: 1047 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.17%)
Alanine (Ala, A)
n = 39 (11.21%)
Serine (Ser, S)
n = 23 (6.61%)
Threonine (Thr, T)
n = 49 (14.08%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 6 (1.72%)
Leucine (Leu, L)
n = 66 (18.97%)
Isoleucine (Ile, I)
n = 28 (8.05%)
Methionine (Met, M)
n = 19 (5.46%)
Proline (Pro, P)
n = 19 (5.46%)
Phenylalanine (Phe, F)
n = 9 (2.59%)
Tyrosine (Tyr, Y)
n = 8 (2.3%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 4 (1.15%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 8 (2.3%)
Glutamine (Gln, Q)
n = 14 (4.02%)
Histidine (His, H)
n = 6 (1.72%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 6 (1.72%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 14 | 14 | 15 | 3 | 9 | 37 | 8 | 9 | 14 | 0 | 2 | 1 | 3 | 0 | 4 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 1 | 4 | 17 | 16 | 2 | 0 | 2 | 14 | 2 | 1 | 6 | 12 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 23 | 22 | 1 | 4 | 3 | 7 | 1 | 0 | 8 | 3 | 5 | 0 | 0 | 5 | 3 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 5 | 4 | 1 | 0 | 4 | 9 | 0 | 1 | 2 | 2 | 1 | 0 | 0 | 0 | 1 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 72 | 102 | 121 | 54 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 44 | 122 | 55 | 128 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 21 | 108 | 175 | 45 | ||||||||||||
| ND3 (size: 1047 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 18 (5.17%)
Alanine (Ala, A)
n = 39 (11.21%)
Serine (Ser, S)
n = 23 (6.61%)
Threonine (Thr, T)
n = 49 (14.08%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 6 (1.72%)
Leucine (Leu, L)
n = 66 (18.97%)
Isoleucine (Ile, I)
n = 28 (8.05%)
Methionine (Met, M)
n = 19 (5.46%)
Proline (Pro, P)
n = 19 (5.46%)
Phenylalanine (Phe, F)
n = 9 (2.59%)
Tyrosine (Tyr, Y)
n = 8 (2.3%)
Tryptophan (Trp, W)
n = 11 (3.16%)
Aspartic acid (Asp, D)
n = 4 (1.15%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 8 (2.3%)
Glutamine (Gln, Q)
n = 14 (4.02%)
Histidine (His, H)
n = 6 (1.72%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 6 (1.72%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 14 | 14 | 15 | 3 | 9 | 37 | 8 | 9 | 14 | 0 | 2 | 1 | 3 | 0 | 4 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 1 | 4 | 17 | 16 | 2 | 0 | 2 | 14 | 2 | 1 | 6 | 12 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 23 | 22 | 1 | 4 | 3 | 7 | 1 | 0 | 8 | 3 | 5 | 0 | 0 | 5 | 3 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 5 | 4 | 1 | 0 | 4 | 9 | 0 | 1 | 2 | 2 | 1 | 0 | 0 | 0 | 1 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 72 | 102 | 121 | 54 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 44 | 122 | 55 | 128 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 21 | 108 | 175 | 45 | ||||||||||||
| ND4 (size: 1381 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 30 (6.54%)
Alanine (Ala, A)
n = 33 (7.19%)
Serine (Ser, S)
n = 28 (6.1%)
Threonine (Thr, T)
n = 41 (8.93%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 18 (3.92%)
Leucine (Leu, L)
n = 89 (19.39%)
Isoleucine (Ile, I)
n = 39 (8.5%)
Methionine (Met, M)
n = 27 (5.88%)
Proline (Pro, P)
n = 27 (5.88%)
Phenylalanine (Phe, F)
n = 17 (3.7%)
Tyrosine (Tyr, Y)
n = 14 (3.05%)
Tryptophan (Trp, W)
n = 20 (4.36%)
Aspartic acid (Asp, D)
n = 2 (0.44%)
Glutamic acid (Glu, E)
n = 12 (2.61%)
Asparagine (Asn, N)
n = 12 (2.61%)
Glutamine (Gln, Q)
n = 13 (2.83%)
Histidine (His, H)
n = 12 (2.61%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 11 (2.4%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 18 | 21 | 22 | 12 | 16 | 40 | 5 | 16 | 13 | 0 | 2 | 4 | 12 | 0 | 7 | 10 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 0 | 5 | 5 | 14 | 14 | 0 | 6 | 6 | 15 | 3 | 4 | 7 | 13 | 3 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 11 | 22 | 0 | 1 | 11 | 8 | 2 | 0 | 6 | 5 | 9 | 2 | 0 | 3 | 9 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 9 | 12 | 0 | 0 | 2 | 8 | 2 | 1 | 2 | 5 | 3 | 0 | 0 | 0 | 0 | 18 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 95 | 136 | 135 | 94 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 72 | 123 | 75 | 190 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 25 | 142 | 218 | 75 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 6 (6.12%)
Alanine (Ala, A)
n = 13 (13.27%)
Serine (Ser, S)
n = 9 (9.18%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 5 (5.1%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 8 (8.16%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (3.06%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 2 | 0 | 3 | 2 | 2 | 12 | 2 | 5 | 3 | 0 | 1 | 0 | 1 | 0 | 3 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 1 | 2 | 4 | 3 | 5 | 1 | 1 | 1 | 4 | 0 | 1 | 1 | 0 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 4 | 3 | 0 | 1 | 3 | 2 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 1 | 1 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 3 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 25 | 30 | 20 | 24 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 16 | 29 | 14 | 40 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 6 | 30 | 44 | 19 | ||||||||||||
| ND5 (size: 1824 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 32 (5.27%)
Alanine (Ala, A)
n = 53 (8.73%)
Serine (Ser, S)
n = 37 (6.1%)
Threonine (Thr, T)
n = 57 (9.39%)
Cysteine (Cys, C)
n = 5 (0.82%)
Valine (Val, V)
n = 26 (4.28%)
Leucine (Leu, L)
n = 91 (14.99%)
Isoleucine (Ile, I)
n = 58 (9.56%)
Methionine (Met, M)
n = 36 (5.93%)
Proline (Pro, P)
n = 26 (4.28%)
Phenylalanine (Phe, F)
n = 39 (6.43%)
Tyrosine (Tyr, Y)
n = 12 (1.98%)
Tryptophan (Trp, W)
n = 13 (2.14%)
Aspartic acid (Asp, D)
n = 14 (2.31%)
Glutamic acid (Glu, E)
n = 11 (1.81%)
Asparagine (Asn, N)
n = 31 (5.11%)
Glutamine (Gln, Q)
n = 20 (3.29%)
Histidine (His, H)
n = 13 (2.14%)
Lysine (Lys, K)
n = 22 (3.62%)
Arginine (Arg, R)
n = 11 (1.81%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 30 | 28 | 31 | 10 | 19 | 45 | 6 | 10 | 19 | 1 | 6 | 6 | 13 | 1 | 11 | 28 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 1 | 4 | 3 | 29 | 19 | 2 | 2 | 9 | 19 | 2 | 3 | 9 | 12 | 2 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 23 | 27 | 1 | 2 | 8 | 16 | 1 | 3 | 7 | 2 | 10 | 0 | 1 | 7 | 24 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 10 | 1 | 1 | 13 | 20 | 2 | 0 | 2 | 9 | 0 | 0 | 0 | 1 | 0 | 13 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 136 | 150 | 214 | 108 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 71 | 163 | 124 | 250 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 25 | 229 | 264 | 90 | ||||||||||||
| ND6 (size: 519 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 26 (15.12%)
Alanine (Ala, A)
n = 18 (10.47%)
Serine (Ser, S)
n = 11 (6.4%)
Threonine (Thr, T)
n = 4 (2.33%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 28 (16.28%)
Leucine (Leu, L)
n = 32 (18.6%)
Isoleucine (Ile, I)
n = 4 (2.33%)
Methionine (Met, M)
n = 6 (3.49%)
Proline (Pro, P)
n = 4 (2.33%)
Phenylalanine (Phe, F)
n = 9 (5.23%)
Tyrosine (Tyr, Y)
n = 8 (4.65%)
Tryptophan (Trp, W)
n = 5 (2.91%)
Aspartic acid (Asp, D)
n = 2 (1.16%)
Glutamic acid (Glu, E)
n = 5 (2.91%)
Asparagine (Asn, N)
n = 1 (0.58%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 5 (2.91%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 4 | 0 | 1 | 7 | 0 | 0 | 1 | 15 | 0 | 0 | 16 | 0 | 5 | 7 | 7 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 2 | 0 | 12 | 2 | 3 | 1 | 8 | 3 | 4 | 11 | 3 | 0 | 0 | 1 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 2 | 0 | 1 | 6 | 0 | 1 | 1 | 3 | 0 | 6 | 2 | 3 | 9 | 1 | 0 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 3 | 2 | 2 | 0 | 0 | 1 | 4 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 2 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 79 | 18 | 19 | 57 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 41 | 34 | 19 | 79 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 44 | 11 | 35 | 83 | ||||||||||||
| Total protein-coding genes (size: 11412 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 248 (6.52%)
Alanine (Ala, A)
n = 338 (8.89%)
Serine (Ser, S)
n = 232 (6.1%)
Threonine (Thr, T)
n = 300 (7.89%)
Cysteine (Cys, C)
n = 25 (0.66%)
Valine (Val, V)
n = 227 (5.97%)
Leucine (Leu, L)
n = 626 (16.47%)
Isoleucine (Ile, I)
n = 294 (7.73%)
Methionine (Met, M)
n = 175 (4.6%)
Proline (Pro, P)
n = 212 (5.58%)
Phenylalanine (Phe, F)
n = 222 (5.84%)
Tyrosine (Tyr, Y)
n = 115 (3.02%)
Tryptophan (Trp, W)
n = 120 (3.16%)
Aspartic acid (Asp, D)
n = 75 (1.97%)
Glutamic acid (Glu, E)
n = 102 (2.68%)
Asparagine (Asn, N)
n = 121 (3.18%)
Glutamine (Gln, Q)
n = 99 (2.6%)
Histidine (His, H)
n = 104 (2.74%)
Lysine (Lys, K)
n = 79 (2.08%)
Arginine (Arg, R)
n = 79 (2.08%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 157 | 137 | 126 | 82 | 99 | 297 | 37 | 100 | 98 | 1 | 58 | 33 | 118 | 18 | 76 | 146 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 49 | 5 | 20 | 55 | 144 | 129 | 10 | 32 | 44 | 137 | 35 | 33 | 52 | 115 | 12 | 42 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 104 | 146 | 8 | 29 | 57 | 82 | 9 | 9 | 46 | 50 | 65 | 8 | 11 | 45 | 76 | 23 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 81 | 94 | 8 | 11 | 64 | 73 | 6 | 9 | 15 | 45 | 10 | 0 | 0 | 7 | 3 | 112 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 990 | 1009 | 1024 | 780 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 527 | 1027 | 705 | 1544 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 225 | 1183 | 1679 | 716 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​C​y​p​r​i​n​u​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ c​a​r​p​i​o​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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