Viewing data for Thryonomys swinderianus


Scientific name Thryonomys swinderianus
Common name Cane rat
Maximum lifespan 5.40 years (Thryonomys swinderianus@AnAge)

Total mtDNA (size: 16626 bases) GC AT G C A T
Base content (bases) 6022 10604 4029 1993 4846 5758
Base content per 1 kb (bases) 362 638 242 120 291 346
Base content (%) 36.2% 63.8%
Total protein-coding genes (size: 11333 bases) GC AT G C A T
Base content (bases) 4126 7207 2908 1218 3401 3806
Base content per 1 kb (bases) 364 636 257 107 300 336
Base content (%) 36.4% 63.6%
D-loop (size: 946 bases) GC AT G C A T
Base content (bases) 344 602 213 131 302 300
Base content per 1 kb (bases) 364 636 225 138 319 317
Base content (%) 36.4% 63.6%
Total tRNA-coding genes (size: 1513 bases) GC AT G C A T
Base content (bases) 508 1005 308 200 434 571
Base content per 1 kb (bases) 336 664 204 132 287 377
Base content (%) 33.6% 66.4%
Total rRNA-coding genes (size: 2531 bases) GC AT G C A T
Base content (bases) 941 1590 514 427 631 959
Base content per 1 kb (bases) 372 628 203 169 249 379
Base content (%) 37.2% 62.8%
12S rRNA gene (size: 971 bases) GC AT G C A T
Base content (bases) 381 590 211 170 238 352
Base content per 1 kb (bases) 392 608 217 175 245 363
Base content (%) 39.2% 60.8%
16S rRNA gene (size: 1560 bases) GC AT G C A T
Base content (bases) 560 1000 303 257 393 607
Base content per 1 kb (bases) 359 641 194 165 252 389
Base content (%) 35.9% 64.1%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 233 448 175 58 213 235
Base content per 1 kb (bases) 342 658 257 85 313 345
Base content (%) 34.2% 65.8%
ATP8 (size: 195 bases) GC AT G C A T
Base content (bases) 59 136 50 9 55 81
Base content per 1 kb (bases) 303 697 256 46 282 415
Base content (%) 30.3% 69.7%
COX1 (size: 1545 bases) GC AT G C A T
Base content (bases) 606 939 366 240 469 470
Base content per 1 kb (bases) 392 608 237 155 304 304
Base content (%) 39.2% 60.8%
COX2 (size: 681 bases) GC AT G C A T
Base content (bases) 255 426 174 81 181 245
Base content per 1 kb (bases) 374 626 256 119 266 360
Base content (%) 37.4% 62.6%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 303 481 194 109 236 245
Base content per 1 kb (bases) 386 614 247 139 301 313
Base content (%) 38.6% 61.4%
CYTB (size: 1138 bases) GC AT G C A T
Base content (bases) 456 682 318 138 337 345
Base content per 1 kb (bases) 401 599 279 121 296 303
Base content (%) 40.1% 59.9%
ND1 (size: 960 bases) GC AT G C A T
Base content (bases) 357 603 262 95 289 314
Base content per 1 kb (bases) 372 628 273 99 301 327
Base content (%) 37.2% 62.8%
ND2 (size: 1042 bases) GC AT G C A T
Base content (bases) 346 696 259 87 311 385
Base content per 1 kb (bases) 332 668 249 83 298 369
Base content (%) 33.2% 66.8%
ND3 (size: 346 bases) GC AT G C A T
Base content (bases) 124 222 89 35 109 113
Base content per 1 kb (bases) 358 642 257 101 315 327
Base content (%) 35.8% 64.2%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 501 877 370 131 425 452
Base content per 1 kb (bases) 364 636 269 95 308 328
Base content (%) 36.4% 63.6%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 102 195 72 30 103 92
Base content per 1 kb (bases) 343 657 242 101 347 310
Base content (%) 34.3% 65.7%
ND5 (size: 1812 bases) GC AT G C A T
Base content (bases) 622 1190 455 167 563 627
Base content per 1 kb (bases) 343 657 251 92 311 346
Base content (%) 34.3% 65.7%
ND6 (size: 513 bases) GC AT G C A T
Base content (bases) 173 340 132 41 123 217
Base content per 1 kb (bases) 337 663 257 80 240 423
Base content (%) 33.7% 66.3%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (3.1%)
Alanine (Ala, A)
n = 15 (6.64%)
Serine (Ser, S)
n = 13 (5.75%)
Threonine (Thr, T)
n = 25 (11.06%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (3.98%)
Leucine (Leu, L)
n = 43 (19.03%)
Isoleucine (Ile, I)
n = 27 (11.95%)
Methionine (Met, M)
n = 15 (6.64%)
Proline (Pro, P)
n = 15 (6.64%)
Phenylalanine (Phe, F)
n = 13 (5.75%)
Tyrosine (Tyr, Y)
n = 2 (0.88%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 11 (4.87%)
Glutamine (Gln, Q)
n = 7 (3.1%)
Histidine (His, H)
n = 7 (3.1%)
Lysine (Lys, K)
n = 5 (2.21%)
Arginine (Arg, R)
n = 5 (2.21%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 13 12 8 2 19 1 13 7 0 1 1 7 0 8 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 6 3 6 0 3 1 3 0 7 0 7 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 16 0 2 1 7 0 0 3 2 0 0 0 2 9 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 3 0 0 1 5 0 1 1 3 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
35 64 86 42
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
18 65 37 107
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 46 112 64
ATP8 (size: 195 bases)
Amino acid sequence: MPQLDTSTWALTIISMIITLFYFFQKKMMSYYYYNINSQLKPMKTPKHLTPWEKKWTKTYSPLS*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.56%)
Serine (Ser, S)
n = 6 (9.38%)
Threonine (Thr, T)
n = 8 (12.5%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 6 (9.38%)
Isoleucine (Ile, I)
n = 5 (7.81%)
Methionine (Met, M)
n = 5 (7.81%)
Proline (Pro, P)
n = 5 (7.81%)
Phenylalanine (Phe, F)
n = 3 (4.69%)
Tyrosine (Tyr, Y)
n = 6 (9.38%)
Tryptophan (Trp, W)
n = 3 (4.69%)
Aspartic acid (Asp, D)
n = 1 (1.56%)
Glutamic acid (Glu, E)
n = 1 (1.56%)
Asparagine (Asn, N)
n = 2 (3.13%)
Glutamine (Gln, Q)
n = 3 (4.69%)
Histidine (His, H)
n = 1 (1.56%)
Lysine (Lys, K)
n = 8 (12.5%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 3 4 2 2 2 0 0 3 0 0 0 0 0 3 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 1 0 0 0 0 0 0 2 3 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 4 1 1 0 5 0 0 0 5 1 0 0 0 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 0 1 0 7 1 0 0 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
3 15 28 19
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
3 20 23 19
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 15 30 17
COX1 (size: 1545 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.95%)
Alanine (Ala, A)
n = 39 (7.59%)
Serine (Ser, S)
n = 33 (6.42%)
Threonine (Thr, T)
n = 36 (7.0%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 34 (6.61%)
Leucine (Leu, L)
n = 58 (11.28%)
Isoleucine (Ile, I)
n = 40 (7.78%)
Methionine (Met, M)
n = 34 (6.61%)
Proline (Pro, P)
n = 28 (5.45%)
Phenylalanine (Phe, F)
n = 44 (8.56%)
Tyrosine (Tyr, Y)
n = 18 (3.5%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 14 (2.72%)
Glutamic acid (Glu, E)
n = 10 (1.95%)
Asparagine (Asn, N)
n = 20 (3.89%)
Glutamine (Gln, Q)
n = 6 (1.17%)
Histidine (His, H)
n = 19 (3.7%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
25 15 32 10 3 29 2 13 6 0 10 4 19 1 13 31
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 8 10 19 2 8 2 31 5 14 4 7 3 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 24 1 7 12 9 1 2 2 8 10 1 1 5 15 10
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 9 1 8 6 8 1 0 1 7 0 0 0 1 0 16
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
143 105 143 124
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
76 132 97 210
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 129 230 135
COX2 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.54%)
Alanine (Ala, A)
n = 6 (2.65%)
Serine (Ser, S)
n = 17 (7.52%)
Threonine (Thr, T)
n = 22 (9.73%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 9 (3.98%)
Leucine (Leu, L)
n = 31 (13.72%)
Isoleucine (Ile, I)
n = 21 (9.29%)
Methionine (Met, M)
n = 17 (7.52%)
Proline (Pro, P)
n = 14 (6.19%)
Phenylalanine (Phe, F)
n = 8 (3.54%)
Tyrosine (Tyr, Y)
n = 10 (4.42%)
Tryptophan (Trp, W)
n = 5 (2.21%)
Aspartic acid (Asp, D)
n = 10 (4.42%)
Glutamic acid (Glu, E)
n = 16 (7.08%)
Asparagine (Asn, N)
n = 8 (3.54%)
Glutamine (Gln, Q)
n = 6 (2.65%)
Histidine (His, H)
n = 6 (2.65%)
Lysine (Lys, K)
n = 4 (1.77%)
Arginine (Arg, R)
n = 6 (2.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 11 14 3 4 13 1 10 6 0 3 0 5 1 2 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 2 3 1 2 0 0 1 7 0 3 9 2 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 15 0 4 1 8 0 1 3 4 6 0 0 1 7 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 14 2 5 5 4 0 1 3 2 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
49 53 76 49
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 55 61 86
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 66 108 46
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.46%)
Alanine (Ala, A)
n = 13 (5.0%)
Serine (Ser, S)
n = 23 (8.85%)
Threonine (Thr, T)
n = 20 (7.69%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 13 (5.0%)
Leucine (Leu, L)
n = 33 (12.69%)
Isoleucine (Ile, I)
n = 20 (7.69%)
Methionine (Met, M)
n = 11 (4.23%)
Proline (Pro, P)
n = 10 (3.85%)
Phenylalanine (Phe, F)
n = 20 (7.69%)
Tyrosine (Tyr, Y)
n = 13 (5.0%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 8 (3.08%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 6 10 5 6 12 0 10 7 0 4 1 7 1 10 10
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 0 2 3 8 0 4 4 12 2 0 3 7 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 13 0 3 4 12 0 1 3 4 9 0 0 3 5 8
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 6 2 1 2 2 0 1 0 4 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
59 62 65 75
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 62 58 97
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 70 122 63
CYTB (size: 1138 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 23 (6.08%)
Alanine (Ala, A)
n = 24 (6.35%)
Serine (Ser, S)
n = 22 (5.82%)
Threonine (Thr, T)
n = 25 (6.61%)
Cysteine (Cys, C)
n = 5 (1.32%)
Valine (Val, V)
n = 15 (3.97%)
Leucine (Leu, L)
n = 64 (16.93%)
Isoleucine (Ile, I)
n = 37 (9.79%)
Methionine (Met, M)
n = 14 (3.7%)
Proline (Pro, P)
n = 24 (6.35%)
Phenylalanine (Phe, F)
n = 28 (7.41%)
Tyrosine (Tyr, Y)
n = 16 (4.23%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 10 (2.65%)
Glutamic acid (Glu, E)
n = 6 (1.59%)
Asparagine (Asn, N)
n = 16 (4.23%)
Glutamine (Gln, Q)
n = 6 (1.59%)
Histidine (His, H)
n = 13 (3.44%)
Lysine (Lys, K)
n = 11 (2.91%)
Arginine (Arg, R)
n = 8 (2.12%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
20 17 13 10 11 24 1 17 6 0 5 4 5 1 13 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 4 4 10 10 0 2 3 17 1 6 7 10 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 13 0 3 2 14 0 0 3 1 15 1 1 4 12 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 5 1 1 9 10 1 1 1 6 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
78 97 106 98
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
51 92 78 158
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 129 161 80
ND1 (size: 960 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (3.45%)
Alanine (Ala, A)
n = 24 (7.52%)
Serine (Ser, S)
n = 28 (8.78%)
Threonine (Thr, T)
n = 25 (7.84%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 8 (2.51%)
Leucine (Leu, L)
n = 58 (18.18%)
Isoleucine (Ile, I)
n = 29 (9.09%)
Methionine (Met, M)
n = 25 (7.84%)
Proline (Pro, P)
n = 21 (6.58%)
Phenylalanine (Phe, F)
n = 20 (6.27%)
Tyrosine (Tyr, Y)
n = 9 (2.82%)
Tryptophan (Trp, W)
n = 9 (2.82%)
Aspartic acid (Asp, D)
n = 3 (0.94%)
Glutamic acid (Glu, E)
n = 9 (2.82%)
Asparagine (Asn, N)
n = 14 (4.39%)
Glutamine (Gln, Q)
n = 7 (2.19%)
Histidine (His, H)
n = 3 (0.94%)
Lysine (Lys, K)
n = 8 (2.51%)
Arginine (Arg, R)
n = 7 (2.19%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 15 22 2 14 23 1 18 7 0 2 1 5 0 8 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 0 6 5 13 0 0 4 6 1 8 8 5 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 12 1 5 4 13 2 1 3 4 5 0 0 6 8 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 9 0 0 3 8 0 1 2 4 0 0 0 1 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
55 78 105 82
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 94 54 140
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 90 155 67
ND2 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.34%)
Alanine (Ala, A)
n = 17 (4.91%)
Serine (Ser, S)
n = 23 (6.65%)
Threonine (Thr, T)
n = 36 (10.4%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (2.6%)
Leucine (Leu, L)
n = 57 (16.47%)
Isoleucine (Ile, I)
n = 43 (12.43%)
Methionine (Met, M)
n = 40 (11.56%)
Proline (Pro, P)
n = 22 (6.36%)
Phenylalanine (Phe, F)
n = 13 (3.76%)
Tyrosine (Tyr, Y)
n = 9 (2.6%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 23 (6.65%)
Glutamine (Gln, Q)
n = 8 (2.31%)
Histidine (His, H)
n = 4 (1.16%)
Lysine (Lys, K)
n = 9 (2.6%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
28 15 36 7 11 24 1 14 8 0 4 1 4 0 8 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 3 8 6 0 2 4 9 0 5 6 11 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 17 1 2 2 13 0 3 3 6 3 0 0 7 16 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 5 0 1 0 9 0 0 0 3 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
47 80 157 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 92 59 162
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 87 169 85
ND3 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.34%)
Alanine (Ala, A)
n = 17 (4.91%)
Serine (Ser, S)
n = 23 (6.65%)
Threonine (Thr, T)
n = 36 (10.4%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (2.6%)
Leucine (Leu, L)
n = 57 (16.47%)
Isoleucine (Ile, I)
n = 43 (12.43%)
Methionine (Met, M)
n = 40 (11.56%)
Proline (Pro, P)
n = 22 (6.36%)
Phenylalanine (Phe, F)
n = 13 (3.76%)
Tyrosine (Tyr, Y)
n = 9 (2.6%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 23 (6.65%)
Glutamine (Gln, Q)
n = 8 (2.31%)
Histidine (His, H)
n = 4 (1.16%)
Lysine (Lys, K)
n = 9 (2.6%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
28 15 36 7 11 24 1 14 8 0 4 1 4 0 8 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 3 8 6 0 2 4 9 0 5 6 11 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 17 1 2 2 13 0 3 3 6 3 0 0 7 16 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 5 0 1 0 9 0 0 0 3 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
47 80 157 63
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 92 59 162
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 87 169 85
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (3.28%)
Alanine (Ala, A)
n = 27 (5.9%)
Serine (Ser, S)
n = 43 (9.39%)
Threonine (Thr, T)
n = 39 (8.52%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 11 (2.4%)
Leucine (Leu, L)
n = 90 (19.65%)
Isoleucine (Ile, I)
n = 45 (9.83%)
Methionine (Met, M)
n = 39 (8.52%)
Proline (Pro, P)
n = 25 (5.46%)
Phenylalanine (Phe, F)
n = 17 (3.71%)
Tyrosine (Tyr, Y)
n = 17 (3.71%)
Tryptophan (Trp, W)
n = 11 (2.4%)
Aspartic acid (Asp, D)
n = 5 (1.09%)
Glutamic acid (Glu, E)
n = 8 (1.75%)
Asparagine (Asn, N)
n = 19 (4.15%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 13 (2.84%)
Lysine (Lys, K)
n = 12 (2.62%)
Arginine (Arg, R)
n = 10 (2.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
24 21 34 17 11 32 5 24 9 1 4 2 5 0 10 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 2 8 8 11 0 2 4 7 2 6 8 11 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 22 0 9 10 14 1 4 5 9 8 1 1 7 12 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 8 0 2 3 12 0 1 2 6 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
66 123 163 107
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
48 125 84 202
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 122 205 115
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 7 (7.14%)
Serine (Ser, S)
n = 10 (10.2%)
Threonine (Thr, T)
n = 7 (7.14%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 4 (4.08%)
Leucine (Leu, L)
n = 18 (18.37%)
Isoleucine (Ile, I)
n = 10 (10.2%)
Methionine (Met, M)
n = 12 (12.24%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 5 (5.1%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 5 (5.1%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 2 (2.04%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 5 11 2 3 8 0 5 1 1 1 0 2 1 1 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 3 3 1 3 0 2 1 1 0 0 1 0 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 1 0 3 3 3 0 0 1 2 3 0 0 3 2 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 0 0 1 0 0 0 0 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
18 19 35 27
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
9 24 18 48
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 29 39 28
ND5 (size: 1812 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 27 (4.48%)
Alanine (Ala, A)
n = 32 (5.31%)
Serine (Ser, S)
n = 63 (10.45%)
Threonine (Thr, T)
n = 44 (7.3%)
Cysteine (Cys, C)
n = 5 (0.83%)
Valine (Val, V)
n = 11 (1.82%)
Leucine (Leu, L)
n = 85 (14.1%)
Isoleucine (Ile, I)
n = 77 (12.77%)
Methionine (Met, M)
n = 48 (7.96%)
Proline (Pro, P)
n = 27 (4.48%)
Phenylalanine (Phe, F)
n = 40 (6.63%)
Tyrosine (Tyr, Y)
n = 21 (3.48%)
Tryptophan (Trp, W)
n = 13 (2.16%)
Aspartic acid (Asp, D)
n = 8 (1.33%)
Glutamic acid (Glu, E)
n = 13 (2.16%)
Asparagine (Asn, N)
n = 37 (6.14%)
Glutamine (Gln, Q)
n = 14 (2.32%)
Histidine (His, H)
n = 11 (1.82%)
Lysine (Lys, K)
n = 20 (3.32%)
Arginine (Arg, R)
n = 7 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
45 32 45 12 15 34 1 23 14 0 2 2 7 0 18 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 3 6 6 20 0 3 7 16 1 7 8 12 0 12
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 21 0 7 19 23 1 5 8 9 12 2 0 14 23 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 12 1 2 6 20 0 0 1 4 2 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
91 121 239 153
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
65 153 125 261
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 181 263 149
ND6 (size: 513 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (11.18%)
Alanine (Ala, A)
n = 6 (3.53%)
Serine (Ser, S)
n = 12 (7.06%)
Threonine (Thr, T)
n = 5 (2.94%)
Cysteine (Cys, C)
n = 3 (1.76%)
Valine (Val, V)
n = 23 (13.53%)
Leucine (Leu, L)
n = 26 (15.29%)
Isoleucine (Ile, I)
n = 12 (7.06%)
Methionine (Met, M)
n = 10 (5.88%)
Proline (Pro, P)
n = 3 (1.76%)
Phenylalanine (Phe, F)
n = 11 (6.47%)
Tyrosine (Tyr, Y)
n = 12 (7.06%)
Tryptophan (Trp, W)
n = 4 (2.35%)
Aspartic acid (Asp, D)
n = 6 (3.53%)
Glutamic acid (Glu, E)
n = 6 (3.53%)
Asparagine (Asn, N)
n = 5 (2.94%)
Glutamine (Gln, Q)
n = 4 (2.35%)
Histidine (His, H)
n = 1 (0.59%)
Lysine (Lys, K)
n = 2 (1.18%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 2 4 0 0 1 4 15 2 2 11 0 5 7 11 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 3 0 5 1 0 0 7 1 4 7 1 0 1 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 2 1 2 0 4 0 5 1 10 2 0 6 5 0 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 3 3 5 1 0 2 0 0 0 0 1 0 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
60 13 41 57
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
33 20 36 82
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
39 8 46 78
Total protein-coding genes (size: 11372 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 200 (5.28%)
Alanine (Ala, A)
n = 220 (5.81%)
Serine (Ser, S)
n = 298 (7.87%)
Threonine (Thr, T)
n = 300 (7.92%)
Cysteine (Cys, C)
n = 25 (0.66%)
Valine (Val, V)
n = 147 (3.88%)
Leucine (Leu, L)
n = 595 (15.71%)
Isoleucine (Ile, I)
n = 373 (9.85%)
Methionine (Met, M)
n = 279 (7.37%)
Proline (Pro, P)
n = 202 (5.33%)
Phenylalanine (Phe, F)
n = 230 (6.07%)
Tyrosine (Tyr, Y)
n = 142 (3.75%)
Tryptophan (Trp, W)
n = 103 (2.72%)
Aspartic acid (Asp, D)
n = 65 (1.72%)
Glutamic acid (Glu, E)
n = 94 (2.48%)
Asparagine (Asn, N)
n = 175 (4.62%)
Glutamine (Gln, Q)
n = 83 (2.19%)
Histidine (His, H)
n = 97 (2.56%)
Lysine (Lys, K)
n = 92 (2.43%)
Arginine (Arg, R)
n = 61 (1.61%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
215 158 246 83 84 232 18 168 79 4 47 16 72 12 109 121
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
33 10 15 57 61 100 2 33 33 115 19 60 62 74 6 69
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
63 163 5 49 58 128 5 22 36 66 76 6 10 60 115 42
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
55 84 10 26 39 87 5 6 11 41 3 1 0 7 0 97
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
726 860 1278 925
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
448 962 755 1624
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
138 1003 1694 954

>NC_002658.1 Thryonomys swinderianus mitochondrion, complete genome
GTTAATGTAGCTTAAAATAAAGCAAAGCACTGAAAATGCTTAGACGAGTACTCAAATACTCCATAAACAC
AAATGTTTGGTCCTGGCTTTTTTATTAGTTGTTAGTAGACTTATACATGCAAGCATCCACATCCCAGTGA
GCATGCCCTTTAAATCATAACTAAATTGATCAAAAGGAGCGGGCATCAAGCACGCTTAAATCAAGCAGCT
CATAACGCCTTGCTCAGCCACACCCCCACGGGATACAGCAGTAATAAAAATTAAGCAATAAACGAAAGTT
TGACTTAGTCATACTACTCAGGGTTGGTCAATCTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAAC
TAATAAACTAACGGCGTAAAGGGTGTTTAGGATTAAAAACAACAAATAAAATTAAGATCTACCTGGGTTG
TAAAATGCTTCAGGTAAAATAAAAATCAACACTCCCTCCAACGAAAGTGATTTTAGCCTTTCTGAATACA
CGAAAACTAAGGCCCAAACTGGGATTAGATACCCCACTATGCTTAGTCGTAAAAATAAAATATTCATAAC
AAAATATTTCGCCCGAGAACTACGAGCCACTGCTTAAAACTCAAAGGACTTGGCGGTGCTTTATACCCAC
CTAGAGGAGCCTGTTTTATAATCGATAAACCCCGATACACCTCACCATCTCTTGCTTATAACAGTCTATA
TACCGCCATCTTCAGCGAACCCTAAAAAGGCAAAAAAGTAAGCATAATCATCTAATCATGAAAACGTTAG
GTCAAGGTGTAACTTATGAGATGGAAAAAATGGGCTACATTTTCTTAACAAGAATATCCACGATAATCAT
TATGAAACTAATGATAGAAGGCGGATTTAGTAGTAAATTAAGAATAGAGAGCTTAATTGAACTCGGCCAT
GAAGCACGCACACACCGCCCGTCACCCTCCTTAAGTATCAATAAGTCTAACCTCATTAAACCGGACTACA
GCATATAAAAGGAGGCAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGATAAACAAAACGTAG
CTTAAATAAAGCATCTAGCTTACACCTAGAAGACTTCAATTCAAATGAACGCTTTGAACTAAAACTAGCC
TAACTTTTAAACAACACAACTAAACACGAACTAACAATTAAAGCATTCACCATTATTAAAGTATAGGAGA
TAGAAATATACCTTTAGAGCTATAGAGAAAGTACCGCAAGGGAAAGATGAATGAACAAATAAACAAGTAA
AAAAAAGCATAGACTATATCTAGTACCTTTTGCATAATGAACTAACTAGAAATACATTAGCAAAGAGAAC
TTTAGTTAATAACCCCGAAACCAAGTGAGCTACCTGCTGACAGCTAACAGAGCCAACTCGTCTATGTAGC
AAAATAGTGAGAAGATCAACAGGTAGAGGTGAAAAGCCAACCGAACTTGGTGATAGCTGGTTGTCCAAAC
AAGAATATTAGTTCAACTTTAAGCTTTTCCCAAAAAAACCAAAAATTGCATGAAAACTTAAATGTTAGTC
TATAGAGGGACAGCTCTATAGAAAAGGCTACAACCTTAAACAGAGGGTAAACAAAATAAACGTCCATAGT
AGGCCTAAAAGCAGCCACCAATTAAGAAAGCGTTAAAGCTCAAAACCTTAAAATAAAAAATACCAAAAAT
ATATATATGATCCCCTGTACATCAATTGGACTAATCTATATTACATATATAGAAGAGATAATGTTAGTAT
TAGTAACAAGAAATATTTCTCCTTGCATAAGTTTATATCTTCCCGGACCCTCCACTGATAATTAACAACC
TAATAATACTAACCATACATTAATTACTTATTATACAAATTGTTAATCCAACACAGGCATGCATTAAGGA
AAGACAGAAAAAAGCAAAAGGAACTCGGCAAACACAAATCCCGCCTGTTTACCAAAAACATCACCTCTAG
CATTCCAAATATTAGAGGCACTGCCTGCCCGGTGACTTAAAAGTTAAACGGCCGCGGTATCCTGACCGTG
CAAAGGTAGCATAATCACTTGTTCTTTAAATAAGGACCTGTATGAATGGCTAGACGAGGGTTTTACTGTC
TCTTGCTTTCAGTCAGTGAAATTGACCTTCCCGTGAAGAGGCGGGAATAACATAATAAGACGAGAAGACC
CTATGGAGCTTTAATACCACTATGCATATTTTAACAACAATAATAAAAACAAACAAATAATGTATAGAGT
ATTTCGGTTGGGGTGACCTCGGAGAACAGAAAAACCTCCGAATGATATTAAGTTAGATCTACAAATCAAT
CCTCCTATCATATTATTGACCCAATAAACTTGAACAATGAACCAAGTTACCCTAGGGATAACAGCGCAAT
CCTATTTAAGAGTCCATATCGACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCAATGGTGC
AGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATC
CAGGTCGGTTTCTATCTATTTATAAGTTTCTCCCAGTACGAAAGGACAAGAGAAACAGGGCCAATTATCC
AGTAACGCCCTACAAATAAAAAATTCATCAATCTTAATTTTGTAATTAATTAAAACACTTACCCTAGAAA
AGGGTTTGTTAAGGTGGCAGAGCCTGGCAATTGCATAAAACTTAAAACTTTATAATCAGAGGTTCAACTC
CTCTCCTTAACAACAATGTTCTTAATTAACATTTTAACCCTCCTCCTCCCAATTCTCCTAGCTATAGCTT
TTTTAACGCTCATCGAACGAAAACTACTAGGCTACATGCAATCACGCAAAGGACCCAACATCATTGGGCC
CTATGGCACTTTACAACCTATCGCAGACGCATTAAAACTATTTATTAAAGAACCTATCCACCCATCAACT
TCCTCCATTATACTATTCTCAATTGCACCCCTCATAGCACTATCACTAGCACTCTCAATATGAATTCCCA
TACCCATACCACAACCCCTAGTAAATATAAATATAGGATTACTATTCATTCTAGCAGCCTCAAGCCTCGC
CGTCTACTCTATCCTATGATCAGGATGATCTTCTAACTCAAAATATGCATTATTCGGAGCTCTCCGAGCA
GTTGCTCAAACAATCTCTTACGAAGTATGTTTAGCAATCATTTTACTTTCAATCCTAATACTAAATGGAT
CCTTCACACTAAGCACTTTAATAATTACCCAAAAAAATACATGACTAATCCTCCCTACTTGACCTCTAAC
AATAATATGATTTATTTCAACACTAGCAGAAACAAACCGAGCTCCTTTCGACCTCACAGAAGGAGAATCT
GAATTAGTATCGGGCTTTAACGTAGAATATGCTGCAGGCCCTTTCGCCTTATTCTTTATAGCAGAATACA
TAAACATCATCCTAATAAACGCCCTCACCGTTACTATTTTCATAAATTCATCCCCTTTATTATTAAACAC
AACAAGCTTTACTACTACTTTTATTCTAAAAACACTTATACTCGTAATACTCTTCCTATGAATCCGCGCC
TCATACCCACGATTCCGTTATGACCAACTAATACACTTATTATGAAAAAATTTTCTACCCTTAACACTGG
CAATATCGATATGACATATCTCAATACCAATCATGCTATTCAGTACACCCCCTCAAACCATCTAAACACT
ATTAGAAATATGTCTGAAAAAGAATTACTTTGATAGAGTAAATTATAGAGGTTTAAACCCTCTTATTTCT
AGAATTATAGGAATTGAACCTAATCCAAAGAATTCAAATTTCTCCGTGCTACCAATTACACCATATTCTA
AAGTAAGGTCAGCTAAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGATCATACCCCTCCCCTACTA
ATTAACATTATACCTAACATTATCCTATACTCTACCCTAATTATAGGCACGCTAATCACAATCACAAGCT
CACACTGAATTTTAATGTGAGTAGGACTAGAAATAGGAATATTTGCTATAATTCCTATTATAATAGATAA
AAAAAATCCACGATCAACTGAAGCAGCAACAAAATATTTTCTAACCCAAACAACAGCCTCAATAATACTA
TTAATAAGTATTATTCTTACTATACTATATTCAGGTAATTGAGAAATTTTACATAACAATAACTTAGCCT
TAAACATTATTCCCCTTCTAGCACTAGCCATAAAAATAGGACTTGCCCCATTCCACTTATGAGTTCCAGA
AGTTATACAAGGCATTCCCCTCATAGCCGGAATAATCTTATTAACATGACAAAAAATTGCACCCCTCATC
ATTATAATTCAAATTGCCCCATCCCTTAACAACATAATCACCCTCTCACTGGCAATTATATCCATTCTAA
TAGGAGGCTGAGGAGGACTAAACCAAACACAACTACGAAAAATTATAGCTTACTCATCAATTAGCCACAT
AGGATGAATAACAGCCATCATAATCTATAGTACATCAATTGTACTAATTAACCTCACAATTTATATCGTT
CTTACCCTTCCAATATTTATGATATTTATATATTTTCCAAATACTAACACTCTAACACTCTCACTAAACT
GAAATTCTATACCATTAATGACAATATTAACTTTAACAGTACTCCTATCACTAGGAGGCCTACCCCCACT
AACAGGTTTCTTACCAAAATGAATAATCATCCAAGAAATAATTAACAATAATAGCATTACAATGCCCGTC
ACAATAGCAATTATAGCTCTACTCAACCTTTTCTTTTACATACGATTAGTATATTCAACTACCCTAACTT
TATTTCCTTCAACTAACAACCTAAAATTTAAATGAACCTTCCAACCTAGTACCACCATACCAATAATCAC
CCCCCTCATCATTATCTCAACCCTCCTCCTACCTCTAGCCCCAATCGTTACATTCCTCAACTAGGAAATT
AGGTTAAAAAGACCAAGAGCCTTCAAAGCCCTAAGTAAATACTATCTATTTATTTCCTGCAAATAAGAGT
TGTAAGACTATGACCTTACATCAACTGAACGCAAACCAGACACTTTAATTAAGCTAAACCCTTCTAGGTT
GACAGGCTTCTATCCTACAAAAACTTAGTTAACAGCTAAACGCCTAAAACTACTGGCTTCAACCTACTTC
TCCCGCCTAAAGGAAAAGTGGCGGGAGAAGTCCCGGCAGGAAAACTGCTCCTTCGAATTTGCAATTCAAC
ATGACTAATCACCTCAGGACTTGACAAAAAGAAGCTTTACTACTTCTGTTCTTAGATTTACAGTCTAATG
CCTACTCTCAGCCATTTTGCCTATTCTTCTACCTATGTTCATTAATCGCTGATTATTTTCCACAAACCAC
AAAGACATTGGAACACTATATTTACTATTTGGTGCCTGAGCAGGAATAGTAGGAACTGCTCTAAGCCTTT
TAATCCGAGCTGAATTAGGACAACCGGGTACCCTACTAGGAGATGATCAAATTTATAACGTTATCGTAAC
AGCCCATGCTTTCGTTATAATTTTCTTCATAGTTATACCTATCATAATTGGAGGTTTCGGAAACTGACTA
GTACCTTTAATAATTGGAGCCCCGGATATAGCGTTCCCTCGAATAAACAACATAAGCTTCTGACTTCTTC
CCCCTTCCTTCCTACTACTTCTATCTTCATCAATAATTGAAGCTGGAGCAGGGACAGGATGAACTGTTTA
CCCGCCCCTAGCAGGGAATTTAGCACATGCAGGAGCATCAGTTGACCTAACTATCTTCTCCCTACACCTA
GCAGGTGTCTCCTCAATCCTCGGAGCCATCAACTTTATTACAACTATTATTAATATAAAACCCCCTGCAA
TATCCCAATACCAAACTCCTCTATTTGTATGATCTGTCCTTATTACAGCCGTACTTCTATTACTTTCCCT
TCCAGTACTGGCTGCAGGAATTACAATACTACTAACGGACCGAAATTTAAACACAACATTTTTCGATCCT
GCAGGAGGAGGAGACCCTATTCTTTACCAACACCTATTCTGATTCTTTGGACACCCTGAAGTTTACATTT
TAATCTTACCCGGATTCGGAATAATTTCGCACATCGTAACATATTATTCAAGTAAAAAAGAACCTTTCGG
ATATATAGGAATAGTATGAGCAATAATATCTATCGGTTTCCTAGGATTCATTGTATGAGCCCATCACATA
TTTACAGTAGGTATAGATGTTGATACACGAGCATACTTCACCTCTGCAACAATAATTATCGCTATCCCAA
CAGGAGTAAAAGTGTTTAGTTGGCTAGCAACACTTCATGGAGGTAATATTAAATGATCCCCAGCCATACT
ATGAGCACTAGGCTTTATCTTCCTATTTACTGTTGGGGGATTAACAGGGATTGTTTTAGCCAACTCCTCC
CTAGACATTGTCCTACATGATACATACTATGTAGTAGCACATTTCCACTACGTATTGTCAATGGGAGCAG
TTTTCGCCATTATAGGAGGATTTGTCCATTGATTCCCTCTGTTTTCCGGTTACACACTAAACAACTCCTG
AGCGAAGATTCACTTCTTCGTAATATTTATAGGAGTAAACATAACTTTCTTCCCACAACACTTCTTAGGC
CTATCAGGGATACCACGACGATACTCTGACTACCCAGATGCATATACAACATGAAACACAATTTCATCTA
TAGGATCCTTCATTTCTCTCACAGCTGTAATAATAATAATTTTCATAATCTGAGAAGCTTTCGCATCAAA
ACGAGAAGTACTAAACATCGAAATCACACATACCAACCTAGAATGACTCCATGGATGCCCTCCTCCATAT
CATACATTCGAAGAGCCTGCCTTCGTAAACACCAAATAACACAAGAAAGGAAGGACTCGAACCTTCAAAA
ACTAGTTTCAAGCCAGCCCCATAACCTCTATGACTTTCTTCATAAGATATTAGTAAAATAATTACATAAC
TTCGTCAAAGTTAAATTATAAGTTATTAATCTTATATATCTTTATGGCTTACCCTTACGAAATAGGATTT
CAAGACGCAACATCACCTATCATAGAAGAGTTACTAAATTTCCATGATCATACACTCATAATTGTATTCT
TAATTAGCTCATTAGTACTATATTTAATTTCACTAATACTTACCACAAAACTAACACACACCAGTACTAT
AGACGCCCAAGAAATTGAAACCATCTGAACTATCCTACCCGCAATCATCCTAATTATGATTGCTCTTCCC
TCTCTCCGTATCTTATACATAATAGATGAAATCAACAACCCCTTAATGACAGTAAAAACAATAGGACATC
AATGATACTGAAGCTACGAGTATACAGACTATGAAGAACTAAACTTCGATTCCTACATAATCCCTACAAC
AGATTTAAAACCCGGAGAATTTCGACTTCTAGAAGTTGATAACCGACTGGTTCTCCCCATAGAACTACCA
ATCCGCATACTAATTTCATCAGAAGACGTATTACACTCATGAACAGTGCCCTCTCTAGGACTAAAAACAG
ACGCTATTCCAGGACGCCTCAACCAAACAACCCTAATATCAACTCGCCCCGGCTTATTCTATGGACAATG
CTCTGAAATTTGCGGATCTAACCACAGCTTCATACCCATCGTAATTGAAATAGTTCCCTTACAAACATTC
GAAAACTGATCAACAACAATCTAATCCATTATGAAGCTATTTGCAAGCGTTAACCTTTTAAGTTAAAGAC
TGAGAGATGAAATTCTCTCCATAATGATATGCCTCAACTTGATACATCAACATGAGCCCTAACCATTATT
TCAATAATCATCACACTCTTTTATTTTTTTCAAAAGAAAATAATATCATATTACTATTATAACATCAACT
CACAACTCAAACCCATAAAAACACCCAAACACCTAACCCCCTGAGAAAAAAAATGAACGAAAACTTATTC
TCCTCTTTCATAACACCTTCACTGATTGGTATCCCAATAATTACAATAATCATCTTATTCCCAACTATCC
TATTCCCAACACCTAATCGCCTAATTAACAACCGTTTAATCTCACTACAACAATGACTAATAAACCTAGT
ATTAAAACAAATAATAACAATGCATACCCCGAAAGGACGAACCTGATCACTAATACTAATGACACTAATC
ATATTTATTGCTTCAACCAACCTACTTGGACTATTACCACATTCATTTACACCAACTACACAACTATCAA
TAAACTTAGGTATAGCAATCCCTTTATGATTCGCTACAGTAGTTCTAGGTTTTCGACATAAAGCAAAAAA
ATCACTCGCCCATTTTCTTCCTCAAGGAACACCTATCCCATTAATCCCTATACTCATTATTATTGAAACA
ATTAGCCTTTTTATTCAACCAGTAGCCTTAGCTGTACGACTAACAGCTAACATCACTGCAGGCCACTTAT
TAATTCACCTAATTAGCGCTGCAACATTAACACTAATATCTATTAACTTTCCTACCGCTACAATCTTATT
TACTATTCTTATTCTACTTACTATCCTTGAACTAGCCGTAGCAGTAATCCAAGCATATGTATTTACACTT
CTTGTCAGCCTATATCTACATGACAATACATAATGACACACCAAACACACGCTTACCATATAGTAAACCC
AAGTCCATGACCCCTCACCGGAGCATTATCTGCCCTCTTACTAACATCAGGTATAATTATATGATTTCAT
TTCAACTCTAACTCCCTACTAATAATAGGTCTTCTAGGCAACGCACTAACAATATATCAATGATGACGTG
ACATTATTCGAGAGGGCACATTCCAAGGACATCACACATCAATTGTTCAAAAAGGACTTCGATATGGAAT
AATCTTATTTATCATCTCAGAAGTCCTTTTTTTCTCAGGGTTTTTCTGAGCATTCTACCATTCCAGCTTA
GCCCCAACCCCAGAACTAGGAGGTCACTGACCACCAACAGGAATTAATCCCTTAAACCCACTTGAAGTAC
CCTTACTAAATACATCCGTACTCCTAGCATCTGGAGTTTCAATTACTTGAGCACATCACAGCCTCATAGA
AGGTAATCGAAAACACATAATCCAAGCTTTACTAATCACTATTATTCTAGGAATTTACTTCACAATTCTA
CAAATATCAGAATACTATGAGTCATCATTTACCATTTCAGACGGCATTTACGGATCAACATTTTTCGTTG
CCACAGGGTTTCATGGATTACACGTGATTATTGGAACCACATTTCTCACCGTATGTTTATTACGACAACT
CTACTACCACTTCACATCAAGCCATCACTTCGGATTTGAAGCAGCAGCATGATACTGACATTTTGTTGAT
GTAGTATGACTTTTCCTATATGTATCCATCTACTGATGAGGCTCATATTTCTTTAGTATAACAAATACCA
CTGACTTCCAATCAGCCAATTCTAGTCCAAACCTAGAAAGAAATAATAAACATAATATTAGCTCTATCAT
TCAACTATCTATTAACACTATTACTTATCACTATCGCTTTCTGGATACCCCAAACCAATATTTACACTGA
AAAAGCCAGCCCCTATGAATGTGGATTTGACCCAACAGAATCAGCACGACTACCTTTCTCTATAAAATTT
TTCTTAATTGCCATCACATTTTTGCTATTTGACCTAGAAATTGCTCTTCTTCTACCCCTCCCCTGAGCCT
TACAAACCAATAACCTTCCCCTAATAACTATAGCCTCACTCATACTAGTATTCATTCTAGCATTAGGCCT
AATATACGAATGACTTCAAAACGGACTGGAATGAAATGAATATGGTAATTAGTTTAATACCAAAACAAAT
GATTTCGACTCATTAAATTATGTATCCATCCATAATTACCAAAATGTCTACCATCCTCATAAACATAATT
TCAGCTTACATTATCTCTTTCTTAGGTACTATAATCTATCGATCCCATATAATATCTTCCCTCCTATGCT
TAGAAGGAATAATACTCTCCATATTTATCCTAAGCACTCTTACAATATTAAATCTTCATTACGTATCATT
CATAGCAATTCCCACTATCCTATTAGTATTCGCTGCCTGCGAAGCTGCAATTGGCCTAGCACTATTAGTG
ATAATTTCAAACACCTATGGTACTGACTACGTTCAGAATCTAAATCTACTACAATGCTAAAAATTATCTT
TCCCACTATTATGTTAATCCCTATTACATGACTATCCAAACCCAATATAATCTGAATAAACTCTTCCTCC
CACAGCCTAATAATTGCCCTAATTACAATCCCAATAATTACCCAATTAGACATTAACAGCCACAACCTCT
CTACAATATTCTCATCAGATTCACTATCTTCTCCCCTATTAATCCTTACAACATGACTTCTCCCATTAAC
AATTATTGCAAGTCAACATCACCTAAAACAGGAACCACTTTATCGAAAAAAAATTTATATTACTTTATTA
ATCTCTCTACACACCATACTCATCATAACATTTACTGCCTCAGAAATAATCTTGTTTTATGTATTATTTG
AAGCTACCCTAATCCCAACACTAATCGTCATCACACGTTGGGGAAATCAAACAGAACGGATAAACGCAGG
TCTTTACTTTCTATTTTATACCTTAATTGCTTCTCTTCCACTCCTAGTAGCACTTCTTTACTTACAAAAT
TCAACAGGCTCACTAAACTTTCTATTATACAAACTAAAAGCACTACCTTTACTCCCCACATGATCAAACG
ACCTACTATGACTAGCATGCATTATAGCTTTTATAGTTAAACTCCCTATATATGGATTACACTTATGATT
ACCAAAAGCACACGTAGAAGCCCCAATTGCAGGGTCCATAGTACTAGCTGCTATCTTACTGAAACTAGGC
GGCTATGGTATAATACGAATTTCACAACTTCTTGACCCTTTAACCAATACAATAATATACCCTTTCATCA
TACTCTCACTATGAGGAATACTTATAACTAGCTCAATTTGTCTACGCCAAACAGATCTGAAATCGTTAAT
TGCATATTCCTCAGTTAGTCACATAGCCTTAGTAATTGTTGCTATCCTAATTCAAACCCCACTAAGTTAT
GCAGGCGCTACTACACTGATAATTGCCCATGGATTAACCTCATCCCTCTTATTCTGCCTTGCAAACTCCA
ACTACGAACGAACACACAGCCGAACTATATTACTTGCCCGCGGACTACAAGTTATCCTCCCACTTATGGC
CCTATGATGAATATTATCAAGCTTCAGTAACCTGGCCCTTCCCCCAACAATTAACCTTCTAGGAGAAATA
ATAATTATCATTTCCTCCTTCTCCTGATCTAACTTCACTATACTATTTATAGCTCTCAATATGCTAGTCA
CAGCAATATACTCTCTATATATATTAATCTCAACACAACGAGGAACTCCTCCCTACCATATCCACAATAT
TACCCCCTCTTACACACGAGAAAATATACTCATAACATTACACCTGCTTCCCCTATTCCTTACCATAATA
AACCCAAAAATCATCATGGGGTTTACAATCTGTAATTATAGTTTAACAAAAACATTAGACTGTGAATCTA
ACAATAAAAGATTATACTTTTTAATTACCAAGAAAGTAGCTAGGAACTGCTAACTCCTACTTCTACAAAT
AAAACTGTAGCTTTCTTACACAGTTTCTATTAATAATTCTATAACAACCCTCATAAATAACTCCACACAT
TCTCCCAACCAATTTAACTAATAAGCCTCATAATTTACTCATAAACCCACTATTACATGCCCACAACCAA
TACCAAATAAATAAAACCAATAACCCTAAACCTAGCAATATAAATTGTTCTATAATCAACTCCAATTATC
ACATAACTATTACAAACAACAACTTTTATAGGATAGAAGTAATCCATTAGTCTTAGGAACTAAAAAATTG
GTGCAACTCCAAATAAAAGTAATTAACCTATTATCCTCCCTATTCATAATATCCCTCCTCATTTTAATCA
TCCCAATCATTATCCCCTCATGTATCTTACCTAAATCATGAAACTACCCCTCCTATATCAAAACCATTGT
TGCCTTATCCTTCTCACTAAGCATAATTCCTACCCTTATATTAATTTACTTCGAAGGAGAAGGAATAATC
TCGAACTGAAACTGAATCTCAATACAAACTTTCAACATTAATATAAGCTTCAAATTAGACTACTTTTCTA
TCCTATTTATATCAGTAGCCCTCTTCGTAACATGATCAATCATAGAATTTTCCTTATGATATATACACTC
AGACCCTTACATCAACCTATTCTTCAAATATTTAATTATATTCCTCATCACAATAATAATTTTAGTAACT
GCTAACAACATCTTCCAACTTTTTATTGGTTGGGAAGGAGTCGGCATTATATCTTTCCTACTAATTGGAT
GGTGACTTAGCCGATCAGAAGCTAACACCGCTGCCCTCCAAGCAATCCTTTATAATCGAATTGGAGACAT
TGGATTAATTATTTCCATAACATGATTCTTACTAAACAGTAATTCATGAGAAATACAACAAATATTTATA
ACACACAACAAAATTGATATTTTACCAATACTGGGCCTACTACTTGCAGCAACCGGCAAATCAGCTCAAT
TCGGCCTTCACCCATGACTACCCGCAGCAATAGAGGGTCCAACTCCAGTATCCGCATTACTACACTCAAG
TACTATAGTTGTAGCAGGAATTTTTTTACTCATTCGATTTTACCCCCTACTTACTCTAAACGAATCAATT
ATGACCTTATCCCTATGTCTAGGTGCTATTACAACACTATTTACCGCCCTCTGCGCAATTACACAAAACG
ATATCAAAAAAATCATCGCATTCTCAACTTCCAGTCAACTAGGACTAATAATAGTAACTATTGGAATCAA
TCAACCCCATCTAGCATTTCTCCACATCTGCATACATGCATTTTTCAAAGCAATACTATTCATATGCTCT
GGGTCCATTATTCATAGCCTAAATAATGAACAAGACATTCGAAAAATAGGAGGCCTATATAAAACAATAC
CATTTACATCTTCTGCTATAATCATTGGAAGCCTAGCCTTAACAGGAATCCCTTTCCTTACAGGCTTTTA
CTCAAAAGACTTAATCATCGAATCCATATCAACCTCCTACCTCAATGCCTGAGCACTCCTCCTAACAATA
ATTGCAACTTCCTTTACAGCAGTCTACAGTATACGGATCATCTTTTACCCTTTACTTAATTATCCTAATT
ATAATTCACCAATAAATATTAACGAAAACAACCCACAACTAATTAATCCAATTAAACGCCTAGCAATCGG
AAGCATCTTTGCAGGATTCTTTATTTCTAACAGTATTATCCCAATAAACATGCCTCAAATAACAATACCC
TTATATATTAAACTCACCGCAATTACAGTAACTCTCCTTGGATTCATGCTAGCAATTGAACTAAACAACA
TATCCTACAACCTCAAACCATTCCACCATTCAAAATCATCAATATTCTCAACTATACTAGGCTTCTACCC
AACAATTATACATCGGCTCATTCCCCTATACAAACTTTTAACTAGCCAAAACCTAGCAACCTCCTCTATA
GACATAACATGACTAGAAAAAACAATTCCCAAAACCATCTCAAATATCAACATCACATTATCCAGCATAT
CAACTAATCAACTAGGACTTATTAAAATTTATTTTATATCATTTTTAATTTCCTTAACCATCTCCATTAT
AATTACAACATAACCTCCCCCGAGTAATCTCAATAATGATAAAAATACCAGCAAACAATGTTCACCCTCC
AATAAATAATAATCAACAATTATAACTGTAAATAGTTGCAACCCCAGCAGGATCACCTCTAAAAACCCAA
CCCCCTTATCACTATCATATACAACTCATTCCCCTATGCTATTATACTGAACTAAGGCTTCCACTTGATC
ATTAACAACTCAATTATAAATTATCAGTAACTCCATTAATAAACCTATAAAAGTAGCACTTCAGATAATC
ACATTAGACCCTCATGAGTCCGGGTACTGATCTGTAGCCATAGCAGTCGTATAACCAAACACCACCATCA
TACCACCTAAATATACTAAAAACACCATTAAGCCCAAAAATGACCCACCATAACTTAAAATAATAAAACA
TCCCACCCCACCACTAACAATTAAAGCTAATCCTCCATATACTGGAGAAGGCTTAACTGAAAATCCAATA
TAACAAATAACAAAAGCAACACTTAAAAAGTATACAATATTCAAAATCATAATTCTCACATGGACTCCAA
CCATGACCAATGACATGAAAAATCACCGTTGTATTTCAACTACAAGAACCTAATGAAAATTACCCGAAAA
GCCCACCCACTACTAAAAATAATTAATCACTCATTCATTGATTTACCCACACCACCAAACATCTCATCAT
GATGAAACTTTGGATCCCTCCTAGGCGCTTGCTTAGCTTTACAAATCCTTACAGGCCTATTTCTAGCAAT
ACACTACACAGCAGACACAACAACAGCATTTTCATCCGTTACTCACATTTGTCGAGACGTAAACTACGGA
TGACTCATCCGATACTTACACGCCAACGGAGCATCAATATTCTTTATCTGCTTATACCTGCACGTAGCAC
GAGGTATATATTACGGATCATACATATTTCTAGAAACTTGAAATTTAGGAGTAATTCTACTACTTTTTGT
TATAGCAACCGCTTTCATAGGATACGTTCTTCCCTGAGGACAAATATCTTTCTGAGGTGCAACTGTCATC
ACAAATCTCCTCTCAGCCATCCCATACATCGGACCTACCCTAGTAGAATGAGTCTGGGGAGGATTCTCTG
TAGACAAAGCAACCTTAACCCGATTTTTCGCCCTCCATTTCATCCTTCCCTTCATTATCACCGCCCTAAC
AATAGTTCACCTACTATTCCTTCATGAAACAGGATCAAACAACCCAACAGGACTAAACTCAGACTGCGAC
AAAATTCCATTCCATCCTTACTACTCAATAAAAGACTTGATTGGACTCTTACTATTATTTTTCTTCCTAT
TATTACTCGTCCTATTTTTCCCAGACATTTTAGGAGACCCTGACAACTACACACCCGCCAACCCCCTAAA
CACTCCCCCACACATTAAGCCTGAATGATACTTTCTATTTGCTTACGCCATCCTCCGCTCAATCCCCAAC
AAACTTGGAGGAGTCCTAGCCCTTCTCCTCTCTATCCTAATTCTTATAATTATCCCTTTTATCCACTTAT
CAAAACAACGAAGCATATCATTCCGTCCACTAAGCCAATGCTTATTCTGAACTCTAGCCGCCAACTTAAT
TATTCTCACTTGAATTGGAGGCCAACCGGTTGAGCACCCTTACATTACAATTGGGCAAGTGGCATCAATC
CTATACTTTACAATTATTTTAATCCTAATACCATTAGCAAGCCTTATTGAAAATAAAATCCTTAAATGAT
AGCTCTAGTAGTATAAACATTACATAGGTCTTGTAAACCTAAAAAGGAAAATTCAAACATTCCCTAGAAC
AACTCAAGGAAGAAAAAGTCATTTCCACCGCCAACTCCCAAAGCTGATGTTCTAATTAAACTATTCCTTG
AATCCTTTCATATAATGTATCAAAATCAATAAAATCACAACATGCAATTATCTCCCCCCCATATGTATTA
TCAACATTAATTATTTAGACCATGGATAATAAGCATGTACTGTAGATTCATGCATAAAATACATTTAATG
TATGATATAAGACATAATAATGTATCACTCCACATAAACCTCATTTCCTCATGTCTATTCTTGTCTACTT
AACCATTAATGACTATCCAAATAAATCTCCGTGATATAGACATAGACCATTAAGTCAAATCTTTTCTAAG
GCCATACGACTATCACTTTCCATTAGTTAGTCTCTTGACTACCATCCTCCGTGAAACCATCAACCCGCCA
GACAGGTGTTACCTCTTCTTGCCACGGGCCCATAAATCGTGGGTGTGACAAAAGTGTACTTCAATAGGCA
GCTGGTTCCTTCTTCAGGGCCATGGTATGTCAACCAATCATACGTTCCCCTTAAATGAGACATTTGTGAT
GATGTTGGTGCCCCCAAGTCCGTGATCGCGGCATTTTAAGGAACTGTCTACATTTGGTATCTTTTATTTT
TCGGTATTCCTGCCTCACCATGGGCCGTCAAGGCCTGGAGCGCTACCGGATCAATTGTAGTATGAACTTA
TTAGTCAAATTGTATAATCCCCATAATAAAAACCTTGCTTGTGTACTCTGTTAATGCTTGCAAGACATAC
CCGCCTGAGCAGTATTAACCCACTTATTGACCGCATTACTTCAGATGGACATTCATTTAATGCTTATAAG
ACATAAACACTCTCCCAAAAAATTTTAACTGCTATCTGCCTATTTCTGAAAAATTTTAACTTATTCATAG
AGTGTATTTATAATTATAAATATATAACACAGAAGTACCCAGCATAACCAGCTACATGAATCTCAGCCCA
TTCTATGAAACATACTATAACTATATACATATTTAA


Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.