Viewing data for Thryonomys swinderianus
| Scientific name | Thryonomys swinderianus |
| Common name | Cane rat |
| Maximum lifespan | 5.40 years (Thryonomys swinderianus@AnAge) |
| Total mtDNA (size: 16626 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 6022 | 10604 | 4029 | 1993 | 4846 | 5758 |
| Base content per 1 kb (bases) | 362 | 638 | 242 | 120 | 291 | 346 |
| Base content (%) | 36.2% | 63.8% | ||||
| Total protein-coding genes (size: 11333 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 4126 | 7207 | 2908 | 1218 | 3401 | 3806 |
| Base content per 1 kb (bases) | 364 | 636 | 257 | 107 | 300 | 336 |
| Base content (%) | 36.4% | 63.6% | ||||
| D-loop (size: 946 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 344 | 602 | 213 | 131 | 302 | 300 |
| Base content per 1 kb (bases) | 364 | 636 | 225 | 138 | 319 | 317 |
| Base content (%) | 36.4% | 63.6% | ||||
| Total tRNA-coding genes (size: 1513 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 508 | 1005 | 308 | 200 | 434 | 571 |
| Base content per 1 kb (bases) | 336 | 664 | 204 | 132 | 287 | 377 |
| Base content (%) | 33.6% | 66.4% | ||||
| Total rRNA-coding genes (size: 2531 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 941 | 1590 | 514 | 427 | 631 | 959 |
| Base content per 1 kb (bases) | 372 | 628 | 203 | 169 | 249 | 379 |
| Base content (%) | 37.2% | 62.8% | ||||
| 12S rRNA gene (size: 971 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 381 | 590 | 211 | 170 | 238 | 352 |
| Base content per 1 kb (bases) | 392 | 608 | 217 | 175 | 245 | 363 |
| Base content (%) | 39.2% | 60.8% | ||||
| 16S rRNA gene (size: 1560 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 560 | 1000 | 303 | 257 | 393 | 607 |
| Base content per 1 kb (bases) | 359 | 641 | 194 | 165 | 252 | 389 |
| Base content (%) | 35.9% | 64.1% | ||||
| ATP6 (size: 681 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 233 | 448 | 175 | 58 | 213 | 235 |
| Base content per 1 kb (bases) | 342 | 658 | 257 | 85 | 313 | 345 |
| Base content (%) | 34.2% | 65.8% | ||||
| ATP8 (size: 195 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 59 | 136 | 50 | 9 | 55 | 81 |
| Base content per 1 kb (bases) | 303 | 697 | 256 | 46 | 282 | 415 |
| Base content (%) | 30.3% | 69.7% | ||||
| COX1 (size: 1545 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 606 | 939 | 366 | 240 | 469 | 470 |
| Base content per 1 kb (bases) | 392 | 608 | 237 | 155 | 304 | 304 |
| Base content (%) | 39.2% | 60.8% | ||||
| COX2 (size: 681 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 255 | 426 | 174 | 81 | 181 | 245 |
| Base content per 1 kb (bases) | 374 | 626 | 256 | 119 | 266 | 360 |
| Base content (%) | 37.4% | 62.6% | ||||
| COX3 (size: 784 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 303 | 481 | 194 | 109 | 236 | 245 |
| Base content per 1 kb (bases) | 386 | 614 | 247 | 139 | 301 | 313 |
| Base content (%) | 38.6% | 61.4% | ||||
| CYTB (size: 1138 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 456 | 682 | 318 | 138 | 337 | 345 |
| Base content per 1 kb (bases) | 401 | 599 | 279 | 121 | 296 | 303 |
| Base content (%) | 40.1% | 59.9% | ||||
| ND1 (size: 960 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 357 | 603 | 262 | 95 | 289 | 314 |
| Base content per 1 kb (bases) | 372 | 628 | 273 | 99 | 301 | 327 |
| Base content (%) | 37.2% | 62.8% | ||||
| ND2 (size: 1042 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 346 | 696 | 259 | 87 | 311 | 385 |
| Base content per 1 kb (bases) | 332 | 668 | 249 | 83 | 298 | 369 |
| Base content (%) | 33.2% | 66.8% | ||||
| ND3 (size: 346 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 124 | 222 | 89 | 35 | 109 | 113 |
| Base content per 1 kb (bases) | 358 | 642 | 257 | 101 | 315 | 327 |
| Base content (%) | 35.8% | 64.2% | ||||
| ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 501 | 877 | 370 | 131 | 425 | 452 |
| Base content per 1 kb (bases) | 364 | 636 | 269 | 95 | 308 | 328 |
| Base content (%) | 36.4% | 63.6% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 102 | 195 | 72 | 30 | 103 | 92 |
| Base content per 1 kb (bases) | 343 | 657 | 242 | 101 | 347 | 310 |
| Base content (%) | 34.3% | 65.7% | ||||
| ND5 (size: 1812 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 622 | 1190 | 455 | 167 | 563 | 627 |
| Base content per 1 kb (bases) | 343 | 657 | 251 | 92 | 311 | 346 |
| Base content (%) | 34.3% | 65.7% | ||||
| ND6 (size: 513 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 173 | 340 | 132 | 41 | 123 | 217 |
| Base content per 1 kb (bases) | 337 | 663 | 257 | 80 | 240 | 423 |
| Base content (%) | 33.7% | 66.3% | ||||
| ATP6 (size: 681 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (3.1%) 
Alanine (Ala, A)
n = 15 (6.64%) 
Serine (Ser, S)
n = 13 (5.75%) 
Threonine (Thr, T)
n = 25 (11.06%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 9 (3.98%) 
Leucine (Leu, L)
n = 43 (19.03%) 
Isoleucine (Ile, I)
n = 27 (11.95%) 
Methionine (Met, M)
n = 15 (6.64%) 
Proline (Pro, P)
n = 15 (6.64%) 
Phenylalanine (Phe, F)
n = 13 (5.75%) 
Tyrosine (Tyr, Y)
n = 2 (0.88%) 
Tryptophan (Trp, W)
n = 3 (1.33%) 
Aspartic acid (Asp, D)
n = 1 (0.44%) 
Glutamic acid (Glu, E)
n = 3 (1.33%) 
Asparagine (Asn, N)
n = 11 (4.87%) 
Glutamine (Gln, Q)
n = 7 (3.1%) 
Histidine (His, H)
n = 7 (3.1%) 
Lysine (Lys, K)
n = 5 (2.21%) 
Arginine (Arg, R)
n = 5 (2.21%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 14 | 13 | 12 | 8 | 2 | 19 | 1 | 13 | 7 | 0 | 1 | 1 | 7 | 0 | 8 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 0 | 6 | 3 | 6 | 0 | 3 | 1 | 3 | 0 | 7 | 0 | 7 | 1 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 4 | 16 | 0 | 2 | 1 | 7 | 0 | 0 | 3 | 2 | 0 | 0 | 0 | 2 | 9 | 5 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 3 | 0 | 0 | 1 | 5 | 0 | 1 | 1 | 3 | 0 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 35 | 64 | 86 | 42 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 18 | 65 | 37 | 107 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 5 | 46 | 112 | 64 | ||||||||||||
| ATP8 (size: 195 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLDTSTWALTIISMIITLFYFFQKKMMSYYYYNINSQLKPMKTPKHLTPWEKKWTKTYSPLS* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.56%)
Serine (Ser, S)
n = 6 (9.38%)
Threonine (Thr, T)
n = 8 (12.5%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 6 (9.38%)
Isoleucine (Ile, I)
n = 5 (7.81%)
Methionine (Met, M)
n = 5 (7.81%)
Proline (Pro, P)
n = 5 (7.81%)
Phenylalanine (Phe, F)
n = 3 (4.69%)
Tyrosine (Tyr, Y)
n = 6 (9.38%)
Tryptophan (Trp, W)
n = 3 (4.69%)
Aspartic acid (Asp, D)
n = 1 (1.56%)
Glutamic acid (Glu, E)
n = 1 (1.56%)
Asparagine (Asn, N)
n = 2 (3.13%)
Glutamine (Gln, Q)
n = 3 (4.69%)
Histidine (His, H)
n = 1 (1.56%)
Lysine (Lys, K)
n = 8 (12.5%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 2 | 3 | 4 | 2 | 2 | 2 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 3 | 0 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 3 | 0 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 2 | 4 | 1 | 1 | 0 | 5 | 0 | 0 | 0 | 5 | 1 | 0 | 0 | 0 | 2 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 1 | 0 | 1 | 0 | 7 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 3 | 15 | 28 | 19 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 3 | 20 | 23 | 19 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 3 | 15 | 30 | 17 | ||||||||||||
| COX1 (size: 1545 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.95%)
Alanine (Ala, A)
n = 39 (7.59%)
Serine (Ser, S)
n = 33 (6.42%)
Threonine (Thr, T)
n = 36 (7.0%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 34 (6.61%)
Leucine (Leu, L)
n = 58 (11.28%)
Isoleucine (Ile, I)
n = 40 (7.78%)
Methionine (Met, M)
n = 34 (6.61%)
Proline (Pro, P)
n = 28 (5.45%)
Phenylalanine (Phe, F)
n = 44 (8.56%)
Tyrosine (Tyr, Y)
n = 18 (3.5%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 14 (2.72%)
Glutamic acid (Glu, E)
n = 10 (1.95%)
Asparagine (Asn, N)
n = 20 (3.89%)
Glutamine (Gln, Q)
n = 6 (1.17%)
Histidine (His, H)
n = 19 (3.7%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 8 (1.56%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 25 | 15 | 32 | 10 | 3 | 29 | 2 | 13 | 6 | 0 | 10 | 4 | 19 | 1 | 13 | 31 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 1 | 8 | 10 | 19 | 2 | 8 | 2 | 31 | 5 | 14 | 4 | 7 | 3 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 4 | 24 | 1 | 7 | 12 | 9 | 1 | 2 | 2 | 8 | 10 | 1 | 1 | 5 | 15 | 10 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 9 | 9 | 1 | 8 | 6 | 8 | 1 | 0 | 1 | 7 | 0 | 0 | 0 | 1 | 0 | 16 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 143 | 105 | 143 | 124 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 76 | 132 | 97 | 210 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 21 | 129 | 230 | 135 | ||||||||||||
| COX2 (size: 681 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.54%)
Alanine (Ala, A)
n = 6 (2.65%)
Serine (Ser, S)
n = 17 (7.52%)
Threonine (Thr, T)
n = 22 (9.73%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 9 (3.98%)
Leucine (Leu, L)
n = 31 (13.72%)
Isoleucine (Ile, I)
n = 21 (9.29%)
Methionine (Met, M)
n = 17 (7.52%)
Proline (Pro, P)
n = 14 (6.19%)
Phenylalanine (Phe, F)
n = 8 (3.54%)
Tyrosine (Tyr, Y)
n = 10 (4.42%)
Tryptophan (Trp, W)
n = 5 (2.21%)
Aspartic acid (Asp, D)
n = 10 (4.42%)
Glutamic acid (Glu, E)
n = 16 (7.08%)
Asparagine (Asn, N)
n = 8 (3.54%)
Glutamine (Gln, Q)
n = 6 (2.65%)
Histidine (His, H)
n = 6 (2.65%)
Lysine (Lys, K)
n = 4 (1.77%)
Arginine (Arg, R)
n = 6 (2.65%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 11 | 14 | 3 | 4 | 13 | 1 | 10 | 6 | 0 | 3 | 0 | 5 | 1 | 2 | 6 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 2 | 3 | 1 | 2 | 0 | 0 | 1 | 7 | 0 | 3 | 9 | 2 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 4 | 15 | 0 | 4 | 1 | 8 | 0 | 1 | 3 | 4 | 6 | 0 | 0 | 1 | 7 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 14 | 2 | 5 | 5 | 4 | 0 | 1 | 3 | 2 | 0 | 0 | 0 | 1 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 49 | 53 | 76 | 49 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 25 | 55 | 61 | 86 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 7 | 66 | 108 | 46 | ||||||||||||
| COX3 (size: 784 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.46%)
Alanine (Ala, A)
n = 13 (5.0%)
Serine (Ser, S)
n = 23 (8.85%)
Threonine (Thr, T)
n = 20 (7.69%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 13 (5.0%)
Leucine (Leu, L)
n = 33 (12.69%)
Isoleucine (Ile, I)
n = 20 (7.69%)
Methionine (Met, M)
n = 11 (4.23%)
Proline (Pro, P)
n = 10 (3.85%)
Phenylalanine (Phe, F)
n = 20 (7.69%)
Tyrosine (Tyr, Y)
n = 13 (5.0%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 8 (3.08%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 14 | 6 | 10 | 5 | 6 | 12 | 0 | 10 | 7 | 0 | 4 | 1 | 7 | 1 | 10 | 10 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 1 | 0 | 2 | 3 | 8 | 0 | 4 | 4 | 12 | 2 | 0 | 3 | 7 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 5 | 13 | 0 | 3 | 4 | 12 | 0 | 1 | 3 | 4 | 9 | 0 | 0 | 3 | 5 | 8 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 9 | 6 | 2 | 1 | 2 | 2 | 0 | 1 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 59 | 62 | 65 | 75 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 44 | 62 | 58 | 97 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 6 | 70 | 122 | 63 | ||||||||||||
| CYTB (size: 1138 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 23 (6.08%)
Alanine (Ala, A)
n = 24 (6.35%)
Serine (Ser, S)
n = 22 (5.82%)
Threonine (Thr, T)
n = 25 (6.61%)
Cysteine (Cys, C)
n = 5 (1.32%)
Valine (Val, V)
n = 15 (3.97%)
Leucine (Leu, L)
n = 64 (16.93%)
Isoleucine (Ile, I)
n = 37 (9.79%)
Methionine (Met, M)
n = 14 (3.7%)
Proline (Pro, P)
n = 24 (6.35%)
Phenylalanine (Phe, F)
n = 28 (7.41%)
Tyrosine (Tyr, Y)
n = 16 (4.23%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 10 (2.65%)
Glutamic acid (Glu, E)
n = 6 (1.59%)
Asparagine (Asn, N)
n = 16 (4.23%)
Glutamine (Gln, Q)
n = 6 (1.59%)
Histidine (His, H)
n = 13 (3.44%)
Lysine (Lys, K)
n = 11 (2.91%)
Arginine (Arg, R)
n = 8 (2.12%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 20 | 17 | 13 | 10 | 11 | 24 | 1 | 17 | 6 | 0 | 5 | 4 | 5 | 1 | 13 | 15 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 1 | 4 | 4 | 10 | 10 | 0 | 2 | 3 | 17 | 1 | 6 | 7 | 10 | 1 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 13 | 0 | 3 | 2 | 14 | 0 | 0 | 3 | 1 | 15 | 1 | 1 | 4 | 12 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 5 | 1 | 1 | 9 | 10 | 1 | 1 | 1 | 6 | 0 | 0 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 78 | 97 | 106 | 98 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 51 | 92 | 78 | 158 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 9 | 129 | 161 | 80 | ||||||||||||
| ND1 (size: 960 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 11 (3.45%)
Alanine (Ala, A)
n = 24 (7.52%)
Serine (Ser, S)
n = 28 (8.78%)
Threonine (Thr, T)
n = 25 (7.84%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 8 (2.51%)
Leucine (Leu, L)
n = 58 (18.18%)
Isoleucine (Ile, I)
n = 29 (9.09%)
Methionine (Met, M)
n = 25 (7.84%)
Proline (Pro, P)
n = 21 (6.58%)
Phenylalanine (Phe, F)
n = 20 (6.27%)
Tyrosine (Tyr, Y)
n = 9 (2.82%)
Tryptophan (Trp, W)
n = 9 (2.82%)
Aspartic acid (Asp, D)
n = 3 (0.94%)
Glutamic acid (Glu, E)
n = 9 (2.82%)
Asparagine (Asn, N)
n = 14 (4.39%)
Glutamine (Gln, Q)
n = 7 (2.19%)
Histidine (His, H)
n = 3 (0.94%)
Lysine (Lys, K)
n = 8 (2.51%)
Arginine (Arg, R)
n = 7 (2.19%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 14 | 15 | 22 | 2 | 14 | 23 | 1 | 18 | 7 | 0 | 2 | 1 | 5 | 0 | 8 | 12 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 0 | 6 | 5 | 13 | 0 | 0 | 4 | 6 | 1 | 8 | 8 | 5 | 0 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 4 | 12 | 1 | 5 | 4 | 13 | 2 | 1 | 3 | 4 | 5 | 0 | 0 | 6 | 8 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 9 | 0 | 0 | 3 | 8 | 0 | 1 | 2 | 4 | 0 | 0 | 0 | 1 | 0 | 9 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 55 | 78 | 105 | 82 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 32 | 94 | 54 | 140 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 8 | 90 | 155 | 67 | ||||||||||||
| ND2 (size: 1042 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.34%)
Alanine (Ala, A)
n = 17 (4.91%)
Serine (Ser, S)
n = 23 (6.65%)
Threonine (Thr, T)
n = 36 (10.4%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (2.6%)
Leucine (Leu, L)
n = 57 (16.47%)
Isoleucine (Ile, I)
n = 43 (12.43%)
Methionine (Met, M)
n = 40 (11.56%)
Proline (Pro, P)
n = 22 (6.36%)
Phenylalanine (Phe, F)
n = 13 (3.76%)
Tyrosine (Tyr, Y)
n = 9 (2.6%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 23 (6.65%)
Glutamine (Gln, Q)
n = 8 (2.31%)
Histidine (His, H)
n = 4 (1.16%)
Lysine (Lys, K)
n = 9 (2.6%)
Arginine (Arg, R)
n = 3 (0.87%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 28 | 15 | 36 | 7 | 11 | 24 | 1 | 14 | 8 | 0 | 4 | 1 | 4 | 0 | 8 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 0 | 3 | 8 | 6 | 0 | 2 | 4 | 9 | 0 | 5 | 6 | 11 | 0 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 10 | 17 | 1 | 2 | 2 | 13 | 0 | 3 | 3 | 6 | 3 | 0 | 0 | 7 | 16 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 5 | 0 | 1 | 0 | 9 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 47 | 80 | 157 | 63 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 34 | 92 | 59 | 162 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 6 | 87 | 169 | 85 | ||||||||||||
| ND3 (size: 1042 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.34%)
Alanine (Ala, A)
n = 17 (4.91%)
Serine (Ser, S)
n = 23 (6.65%)
Threonine (Thr, T)
n = 36 (10.4%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (2.6%)
Leucine (Leu, L)
n = 57 (16.47%)
Isoleucine (Ile, I)
n = 43 (12.43%)
Methionine (Met, M)
n = 40 (11.56%)
Proline (Pro, P)
n = 22 (6.36%)
Phenylalanine (Phe, F)
n = 13 (3.76%)
Tyrosine (Tyr, Y)
n = 9 (2.6%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 23 (6.65%)
Glutamine (Gln, Q)
n = 8 (2.31%)
Histidine (His, H)
n = 4 (1.16%)
Lysine (Lys, K)
n = 9 (2.6%)
Arginine (Arg, R)
n = 3 (0.87%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 28 | 15 | 36 | 7 | 11 | 24 | 1 | 14 | 8 | 0 | 4 | 1 | 4 | 0 | 8 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 0 | 3 | 8 | 6 | 0 | 2 | 4 | 9 | 0 | 5 | 6 | 11 | 0 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 10 | 17 | 1 | 2 | 2 | 13 | 0 | 3 | 3 | 6 | 3 | 0 | 0 | 7 | 16 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 3 | 5 | 0 | 1 | 0 | 9 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 47 | 80 | 157 | 63 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 34 | 92 | 59 | 162 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 6 | 87 | 169 | 85 | ||||||||||||
| ND4 (size: 1378 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 15 (3.28%)
Alanine (Ala, A)
n = 27 (5.9%)
Serine (Ser, S)
n = 43 (9.39%)
Threonine (Thr, T)
n = 39 (8.52%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 11 (2.4%)
Leucine (Leu, L)
n = 90 (19.65%)
Isoleucine (Ile, I)
n = 45 (9.83%)
Methionine (Met, M)
n = 39 (8.52%)
Proline (Pro, P)
n = 25 (5.46%)
Phenylalanine (Phe, F)
n = 17 (3.71%)
Tyrosine (Tyr, Y)
n = 17 (3.71%)
Tryptophan (Trp, W)
n = 11 (2.4%)
Aspartic acid (Asp, D)
n = 5 (1.09%)
Glutamic acid (Glu, E)
n = 8 (1.75%)
Asparagine (Asn, N)
n = 19 (4.15%)
Glutamine (Gln, Q)
n = 10 (2.18%)
Histidine (His, H)
n = 13 (2.84%)
Lysine (Lys, K)
n = 12 (2.62%)
Arginine (Arg, R)
n = 10 (2.18%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 24 | 21 | 34 | 17 | 11 | 32 | 5 | 24 | 9 | 1 | 4 | 2 | 5 | 0 | 10 | 7 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 1 | 2 | 8 | 8 | 11 | 0 | 2 | 4 | 7 | 2 | 6 | 8 | 11 | 0 | 8 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 22 | 0 | 9 | 10 | 14 | 1 | 4 | 5 | 9 | 8 | 1 | 1 | 7 | 12 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 8 | 0 | 2 | 3 | 12 | 0 | 1 | 2 | 6 | 1 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 66 | 123 | 163 | 107 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 48 | 125 | 84 | 202 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 17 | 122 | 205 | 115 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 7 (7.14%)
Serine (Ser, S)
n = 10 (10.2%)
Threonine (Thr, T)
n = 7 (7.14%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 4 (4.08%)
Leucine (Leu, L)
n = 18 (18.37%)
Isoleucine (Ile, I)
n = 10 (10.2%)
Methionine (Met, M)
n = 12 (12.24%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 5 (5.1%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 5 (5.1%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 2 (2.04%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 5 | 5 | 11 | 2 | 3 | 8 | 0 | 5 | 1 | 1 | 1 | 0 | 2 | 1 | 1 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 3 | 3 | 1 | 3 | 0 | 2 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 2 | 1 | 0 | 3 | 3 | 3 | 0 | 0 | 1 | 2 | 3 | 0 | 0 | 3 | 2 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 18 | 19 | 35 | 27 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 9 | 24 | 18 | 48 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 3 | 29 | 39 | 28 | ||||||||||||
| ND5 (size: 1812 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 27 (4.48%)
Alanine (Ala, A)
n = 32 (5.31%)
Serine (Ser, S)
n = 63 (10.45%)
Threonine (Thr, T)
n = 44 (7.3%)
Cysteine (Cys, C)
n = 5 (0.83%)
Valine (Val, V)
n = 11 (1.82%)
Leucine (Leu, L)
n = 85 (14.1%)
Isoleucine (Ile, I)
n = 77 (12.77%)
Methionine (Met, M)
n = 48 (7.96%)
Proline (Pro, P)
n = 27 (4.48%)
Phenylalanine (Phe, F)
n = 40 (6.63%)
Tyrosine (Tyr, Y)
n = 21 (3.48%)
Tryptophan (Trp, W)
n = 13 (2.16%)
Aspartic acid (Asp, D)
n = 8 (1.33%)
Glutamic acid (Glu, E)
n = 13 (2.16%)
Asparagine (Asn, N)
n = 37 (6.14%)
Glutamine (Gln, Q)
n = 14 (2.32%)
Histidine (His, H)
n = 11 (1.82%)
Lysine (Lys, K)
n = 20 (3.32%)
Arginine (Arg, R)
n = 7 (1.16%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 45 | 32 | 45 | 12 | 15 | 34 | 1 | 23 | 14 | 0 | 2 | 2 | 7 | 0 | 18 | 22 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 2 | 3 | 6 | 6 | 20 | 0 | 3 | 7 | 16 | 1 | 7 | 8 | 12 | 0 | 12 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 11 | 21 | 0 | 7 | 19 | 23 | 1 | 5 | 8 | 9 | 12 | 2 | 0 | 14 | 23 | 5 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 6 | 12 | 1 | 2 | 6 | 20 | 0 | 0 | 1 | 4 | 2 | 0 | 0 | 1 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 91 | 121 | 239 | 153 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 65 | 153 | 125 | 261 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 11 | 181 | 263 | 149 | ||||||||||||
| ND6 (size: 513 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 19 (11.18%)
Alanine (Ala, A)
n = 6 (3.53%)
Serine (Ser, S)
n = 12 (7.06%)
Threonine (Thr, T)
n = 5 (2.94%)
Cysteine (Cys, C)
n = 3 (1.76%)
Valine (Val, V)
n = 23 (13.53%)
Leucine (Leu, L)
n = 26 (15.29%)
Isoleucine (Ile, I)
n = 12 (7.06%)
Methionine (Met, M)
n = 10 (5.88%)
Proline (Pro, P)
n = 3 (1.76%)
Phenylalanine (Phe, F)
n = 11 (6.47%)
Tyrosine (Tyr, Y)
n = 12 (7.06%)
Tryptophan (Trp, W)
n = 4 (2.35%)
Aspartic acid (Asp, D)
n = 6 (3.53%)
Glutamic acid (Glu, E)
n = 6 (3.53%)
Asparagine (Asn, N)
n = 5 (2.94%)
Glutamine (Gln, Q)
n = 4 (2.35%)
Histidine (His, H)
n = 1 (0.59%)
Lysine (Lys, K)
n = 2 (1.18%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 2 | 4 | 0 | 0 | 1 | 4 | 15 | 2 | 2 | 11 | 0 | 5 | 7 | 11 | 0 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 3 | 0 | 5 | 1 | 0 | 0 | 7 | 1 | 4 | 7 | 1 | 0 | 1 | 1 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 2 | 1 | 2 | 0 | 4 | 0 | 5 | 1 | 10 | 2 | 0 | 6 | 5 | 0 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 3 | 3 | 5 | 1 | 0 | 2 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 60 | 13 | 41 | 57 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 33 | 20 | 36 | 82 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 39 | 8 | 46 | 78 | ||||||||||||
| Total protein-coding genes (size: 11372 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 200 (5.28%)
Alanine (Ala, A)
n = 220 (5.81%)
Serine (Ser, S)
n = 298 (7.87%)
Threonine (Thr, T)
n = 300 (7.92%)
Cysteine (Cys, C)
n = 25 (0.66%)
Valine (Val, V)
n = 147 (3.88%)
Leucine (Leu, L)
n = 595 (15.71%)
Isoleucine (Ile, I)
n = 373 (9.85%)
Methionine (Met, M)
n = 279 (7.37%)
Proline (Pro, P)
n = 202 (5.33%)
Phenylalanine (Phe, F)
n = 230 (6.07%)
Tyrosine (Tyr, Y)
n = 142 (3.75%)
Tryptophan (Trp, W)
n = 103 (2.72%)
Aspartic acid (Asp, D)
n = 65 (1.72%)
Glutamic acid (Glu, E)
n = 94 (2.48%)
Asparagine (Asn, N)
n = 175 (4.62%)
Glutamine (Gln, Q)
n = 83 (2.19%)
Histidine (His, H)
n = 97 (2.56%)
Lysine (Lys, K)
n = 92 (2.43%)
Arginine (Arg, R)
n = 61 (1.61%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 215 | 158 | 246 | 83 | 84 | 232 | 18 | 168 | 79 | 4 | 47 | 16 | 72 | 12 | 109 | 121 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 33 | 10 | 15 | 57 | 61 | 100 | 2 | 33 | 33 | 115 | 19 | 60 | 62 | 74 | 6 | 69 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 63 | 163 | 5 | 49 | 58 | 128 | 5 | 22 | 36 | 66 | 76 | 6 | 10 | 60 | 115 | 42 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 55 | 84 | 10 | 26 | 39 | 87 | 5 | 6 | 11 | 41 | 3 | 1 | 0 | 7 | 0 | 97 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 726 | 860 | 1278 | 925 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 448 | 962 | 755 | 1624 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 138 | 1003 | 1694 | 954 | ||||||||||||
>NC_002658.1 Thryonomys swinderianus mitochondrion, complete genome GTTAATGTAGCTTAAAATAAAGCAAAGCACTGAAAATGCTTAGACGAGTACTCAAATACTCCATAAACAC AAATGTTTGGTCCTGGCTTTTTTATTAGTTGTTAGTAGACTTATACATGCAAGCATCCACATCCCAGTGA GCATGCCCTTTAAATCATAACTAAATTGATCAAAAGGAGCGGGCATCAAGCACGCTTAAATCAAGCAGCT CATAACGCCTTGCTCAGCCACACCCCCACGGGATACAGCAGTAATAAAAATTAAGCAATAAACGAAAGTT TGACTTAGTCATACTACTCAGGGTTGGTCAATCTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAAC TAATAAACTAACGGCGTAAAGGGTGTTTAGGATTAAAAACAACAAATAAAATTAAGATCTACCTGGGTTG TAAAATGCTTCAGGTAAAATAAAAATCAACACTCCCTCCAACGAAAGTGATTTTAGCCTTTCTGAATACA CGAAAACTAAGGCCCAAACTGGGATTAGATACCCCACTATGCTTAGTCGTAAAAATAAAATATTCATAAC AAAATATTTCGCCCGAGAACTACGAGCCACTGCTTAAAACTCAAAGGACTTGGCGGTGCTTTATACCCAC CTAGAGGAGCCTGTTTTATAATCGATAAACCCCGATACACCTCACCATCTCTTGCTTATAACAGTCTATA TACCGCCATCTTCAGCGAACCCTAAAAAGGCAAAAAAGTAAGCATAATCATCTAATCATGAAAACGTTAG GTCAAGGTGTAACTTATGAGATGGAAAAAATGGGCTACATTTTCTTAACAAGAATATCCACGATAATCAT TATGAAACTAATGATAGAAGGCGGATTTAGTAGTAAATTAAGAATAGAGAGCTTAATTGAACTCGGCCAT GAAGCACGCACACACCGCCCGTCACCCTCCTTAAGTATCAATAAGTCTAACCTCATTAAACCGGACTACA GCATATAAAAGGAGGCAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGATAAACAAAACGTAG CTTAAATAAAGCATCTAGCTTACACCTAGAAGACTTCAATTCAAATGAACGCTTTGAACTAAAACTAGCC TAACTTTTAAACAACACAACTAAACACGAACTAACAATTAAAGCATTCACCATTATTAAAGTATAGGAGA TAGAAATATACCTTTAGAGCTATAGAGAAAGTACCGCAAGGGAAAGATGAATGAACAAATAAACAAGTAA AAAAAAGCATAGACTATATCTAGTACCTTTTGCATAATGAACTAACTAGAAATACATTAGCAAAGAGAAC TTTAGTTAATAACCCCGAAACCAAGTGAGCTACCTGCTGACAGCTAACAGAGCCAACTCGTCTATGTAGC AAAATAGTGAGAAGATCAACAGGTAGAGGTGAAAAGCCAACCGAACTTGGTGATAGCTGGTTGTCCAAAC AAGAATATTAGTTCAACTTTAAGCTTTTCCCAAAAAAACCAAAAATTGCATGAAAACTTAAATGTTAGTC TATAGAGGGACAGCTCTATAGAAAAGGCTACAACCTTAAACAGAGGGTAAACAAAATAAACGTCCATAGT AGGCCTAAAAGCAGCCACCAATTAAGAAAGCGTTAAAGCTCAAAACCTTAAAATAAAAAATACCAAAAAT ATATATATGATCCCCTGTACATCAATTGGACTAATCTATATTACATATATAGAAGAGATAATGTTAGTAT TAGTAACAAGAAATATTTCTCCTTGCATAAGTTTATATCTTCCCGGACCCTCCACTGATAATTAACAACC TAATAATACTAACCATACATTAATTACTTATTATACAAATTGTTAATCCAACACAGGCATGCATTAAGGA AAGACAGAAAAAAGCAAAAGGAACTCGGCAAACACAAATCCCGCCTGTTTACCAAAAACATCACCTCTAG CATTCCAAATATTAGAGGCACTGCCTGCCCGGTGACTTAAAAGTTAAACGGCCGCGGTATCCTGACCGTG CAAAGGTAGCATAATCACTTGTTCTTTAAATAAGGACCTGTATGAATGGCTAGACGAGGGTTTTACTGTC TCTTGCTTTCAGTCAGTGAAATTGACCTTCCCGTGAAGAGGCGGGAATAACATAATAAGACGAGAAGACC CTATGGAGCTTTAATACCACTATGCATATTTTAACAACAATAATAAAAACAAACAAATAATGTATAGAGT ATTTCGGTTGGGGTGACCTCGGAGAACAGAAAAACCTCCGAATGATATTAAGTTAGATCTACAAATCAAT CCTCCTATCATATTATTGACCCAATAAACTTGAACAATGAACCAAGTTACCCTAGGGATAACAGCGCAAT CCTATTTAAGAGTCCATATCGACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCAATGGTGC AGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATC CAGGTCGGTTTCTATCTATTTATAAGTTTCTCCCAGTACGAAAGGACAAGAGAAACAGGGCCAATTATCC AGTAACGCCCTACAAATAAAAAATTCATCAATCTTAATTTTGTAATTAATTAAAACACTTACCCTAGAAA AGGGTTTGTTAAGGTGGCAGAGCCTGGCAATTGCATAAAACTTAAAACTTTATAATCAGAGGTTCAACTC CTCTCCTTAACAACAATGTTCTTAATTAACATTTTAACCCTCCTCCTCCCAATTCTCCTAGCTATAGCTT TTTTAACGCTCATCGAACGAAAACTACTAGGCTACATGCAATCACGCAAAGGACCCAACATCATTGGGCC CTATGGCACTTTACAACCTATCGCAGACGCATTAAAACTATTTATTAAAGAACCTATCCACCCATCAACT TCCTCCATTATACTATTCTCAATTGCACCCCTCATAGCACTATCACTAGCACTCTCAATATGAATTCCCA TACCCATACCACAACCCCTAGTAAATATAAATATAGGATTACTATTCATTCTAGCAGCCTCAAGCCTCGC CGTCTACTCTATCCTATGATCAGGATGATCTTCTAACTCAAAATATGCATTATTCGGAGCTCTCCGAGCA GTTGCTCAAACAATCTCTTACGAAGTATGTTTAGCAATCATTTTACTTTCAATCCTAATACTAAATGGAT CCTTCACACTAAGCACTTTAATAATTACCCAAAAAAATACATGACTAATCCTCCCTACTTGACCTCTAAC AATAATATGATTTATTTCAACACTAGCAGAAACAAACCGAGCTCCTTTCGACCTCACAGAAGGAGAATCT GAATTAGTATCGGGCTTTAACGTAGAATATGCTGCAGGCCCTTTCGCCTTATTCTTTATAGCAGAATACA TAAACATCATCCTAATAAACGCCCTCACCGTTACTATTTTCATAAATTCATCCCCTTTATTATTAAACAC AACAAGCTTTACTACTACTTTTATTCTAAAAACACTTATACTCGTAATACTCTTCCTATGAATCCGCGCC TCATACCCACGATTCCGTTATGACCAACTAATACACTTATTATGAAAAAATTTTCTACCCTTAACACTGG CAATATCGATATGACATATCTCAATACCAATCATGCTATTCAGTACACCCCCTCAAACCATCTAAACACT ATTAGAAATATGTCTGAAAAAGAATTACTTTGATAGAGTAAATTATAGAGGTTTAAACCCTCTTATTTCT AGAATTATAGGAATTGAACCTAATCCAAAGAATTCAAATTTCTCCGTGCTACCAATTACACCATATTCTA AAGTAAGGTCAGCTAAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGATCATACCCCTCCCCTACTA ATTAACATTATACCTAACATTATCCTATACTCTACCCTAATTATAGGCACGCTAATCACAATCACAAGCT CACACTGAATTTTAATGTGAGTAGGACTAGAAATAGGAATATTTGCTATAATTCCTATTATAATAGATAA AAAAAATCCACGATCAACTGAAGCAGCAACAAAATATTTTCTAACCCAAACAACAGCCTCAATAATACTA TTAATAAGTATTATTCTTACTATACTATATTCAGGTAATTGAGAAATTTTACATAACAATAACTTAGCCT TAAACATTATTCCCCTTCTAGCACTAGCCATAAAAATAGGACTTGCCCCATTCCACTTATGAGTTCCAGA AGTTATACAAGGCATTCCCCTCATAGCCGGAATAATCTTATTAACATGACAAAAAATTGCACCCCTCATC ATTATAATTCAAATTGCCCCATCCCTTAACAACATAATCACCCTCTCACTGGCAATTATATCCATTCTAA TAGGAGGCTGAGGAGGACTAAACCAAACACAACTACGAAAAATTATAGCTTACTCATCAATTAGCCACAT AGGATGAATAACAGCCATCATAATCTATAGTACATCAATTGTACTAATTAACCTCACAATTTATATCGTT CTTACCCTTCCAATATTTATGATATTTATATATTTTCCAAATACTAACACTCTAACACTCTCACTAAACT GAAATTCTATACCATTAATGACAATATTAACTTTAACAGTACTCCTATCACTAGGAGGCCTACCCCCACT AACAGGTTTCTTACCAAAATGAATAATCATCCAAGAAATAATTAACAATAATAGCATTACAATGCCCGTC ACAATAGCAATTATAGCTCTACTCAACCTTTTCTTTTACATACGATTAGTATATTCAACTACCCTAACTT TATTTCCTTCAACTAACAACCTAAAATTTAAATGAACCTTCCAACCTAGTACCACCATACCAATAATCAC CCCCCTCATCATTATCTCAACCCTCCTCCTACCTCTAGCCCCAATCGTTACATTCCTCAACTAGGAAATT AGGTTAAAAAGACCAAGAGCCTTCAAAGCCCTAAGTAAATACTATCTATTTATTTCCTGCAAATAAGAGT TGTAAGACTATGACCTTACATCAACTGAACGCAAACCAGACACTTTAATTAAGCTAAACCCTTCTAGGTT GACAGGCTTCTATCCTACAAAAACTTAGTTAACAGCTAAACGCCTAAAACTACTGGCTTCAACCTACTTC TCCCGCCTAAAGGAAAAGTGGCGGGAGAAGTCCCGGCAGGAAAACTGCTCCTTCGAATTTGCAATTCAAC ATGACTAATCACCTCAGGACTTGACAAAAAGAAGCTTTACTACTTCTGTTCTTAGATTTACAGTCTAATG CCTACTCTCAGCCATTTTGCCTATTCTTCTACCTATGTTCATTAATCGCTGATTATTTTCCACAAACCAC AAAGACATTGGAACACTATATTTACTATTTGGTGCCTGAGCAGGAATAGTAGGAACTGCTCTAAGCCTTT TAATCCGAGCTGAATTAGGACAACCGGGTACCCTACTAGGAGATGATCAAATTTATAACGTTATCGTAAC AGCCCATGCTTTCGTTATAATTTTCTTCATAGTTATACCTATCATAATTGGAGGTTTCGGAAACTGACTA GTACCTTTAATAATTGGAGCCCCGGATATAGCGTTCCCTCGAATAAACAACATAAGCTTCTGACTTCTTC CCCCTTCCTTCCTACTACTTCTATCTTCATCAATAATTGAAGCTGGAGCAGGGACAGGATGAACTGTTTA CCCGCCCCTAGCAGGGAATTTAGCACATGCAGGAGCATCAGTTGACCTAACTATCTTCTCCCTACACCTA GCAGGTGTCTCCTCAATCCTCGGAGCCATCAACTTTATTACAACTATTATTAATATAAAACCCCCTGCAA TATCCCAATACCAAACTCCTCTATTTGTATGATCTGTCCTTATTACAGCCGTACTTCTATTACTTTCCCT TCCAGTACTGGCTGCAGGAATTACAATACTACTAACGGACCGAAATTTAAACACAACATTTTTCGATCCT GCAGGAGGAGGAGACCCTATTCTTTACCAACACCTATTCTGATTCTTTGGACACCCTGAAGTTTACATTT TAATCTTACCCGGATTCGGAATAATTTCGCACATCGTAACATATTATTCAAGTAAAAAAGAACCTTTCGG ATATATAGGAATAGTATGAGCAATAATATCTATCGGTTTCCTAGGATTCATTGTATGAGCCCATCACATA TTTACAGTAGGTATAGATGTTGATACACGAGCATACTTCACCTCTGCAACAATAATTATCGCTATCCCAA CAGGAGTAAAAGTGTTTAGTTGGCTAGCAACACTTCATGGAGGTAATATTAAATGATCCCCAGCCATACT ATGAGCACTAGGCTTTATCTTCCTATTTACTGTTGGGGGATTAACAGGGATTGTTTTAGCCAACTCCTCC CTAGACATTGTCCTACATGATACATACTATGTAGTAGCACATTTCCACTACGTATTGTCAATGGGAGCAG TTTTCGCCATTATAGGAGGATTTGTCCATTGATTCCCTCTGTTTTCCGGTTACACACTAAACAACTCCTG AGCGAAGATTCACTTCTTCGTAATATTTATAGGAGTAAACATAACTTTCTTCCCACAACACTTCTTAGGC CTATCAGGGATACCACGACGATACTCTGACTACCCAGATGCATATACAACATGAAACACAATTTCATCTA TAGGATCCTTCATTTCTCTCACAGCTGTAATAATAATAATTTTCATAATCTGAGAAGCTTTCGCATCAAA ACGAGAAGTACTAAACATCGAAATCACACATACCAACCTAGAATGACTCCATGGATGCCCTCCTCCATAT CATACATTCGAAGAGCCTGCCTTCGTAAACACCAAATAACACAAGAAAGGAAGGACTCGAACCTTCAAAA ACTAGTTTCAAGCCAGCCCCATAACCTCTATGACTTTCTTCATAAGATATTAGTAAAATAATTACATAAC TTCGTCAAAGTTAAATTATAAGTTATTAATCTTATATATCTTTATGGCTTACCCTTACGAAATAGGATTT CAAGACGCAACATCACCTATCATAGAAGAGTTACTAAATTTCCATGATCATACACTCATAATTGTATTCT TAATTAGCTCATTAGTACTATATTTAATTTCACTAATACTTACCACAAAACTAACACACACCAGTACTAT AGACGCCCAAGAAATTGAAACCATCTGAACTATCCTACCCGCAATCATCCTAATTATGATTGCTCTTCCC TCTCTCCGTATCTTATACATAATAGATGAAATCAACAACCCCTTAATGACAGTAAAAACAATAGGACATC AATGATACTGAAGCTACGAGTATACAGACTATGAAGAACTAAACTTCGATTCCTACATAATCCCTACAAC AGATTTAAAACCCGGAGAATTTCGACTTCTAGAAGTTGATAACCGACTGGTTCTCCCCATAGAACTACCA ATCCGCATACTAATTTCATCAGAAGACGTATTACACTCATGAACAGTGCCCTCTCTAGGACTAAAAACAG ACGCTATTCCAGGACGCCTCAACCAAACAACCCTAATATCAACTCGCCCCGGCTTATTCTATGGACAATG CTCTGAAATTTGCGGATCTAACCACAGCTTCATACCCATCGTAATTGAAATAGTTCCCTTACAAACATTC GAAAACTGATCAACAACAATCTAATCCATTATGAAGCTATTTGCAAGCGTTAACCTTTTAAGTTAAAGAC TGAGAGATGAAATTCTCTCCATAATGATATGCCTCAACTTGATACATCAACATGAGCCCTAACCATTATT TCAATAATCATCACACTCTTTTATTTTTTTCAAAAGAAAATAATATCATATTACTATTATAACATCAACT CACAACTCAAACCCATAAAAACACCCAAACACCTAACCCCCTGAGAAAAAAAATGAACGAAAACTTATTC TCCTCTTTCATAACACCTTCACTGATTGGTATCCCAATAATTACAATAATCATCTTATTCCCAACTATCC TATTCCCAACACCTAATCGCCTAATTAACAACCGTTTAATCTCACTACAACAATGACTAATAAACCTAGT ATTAAAACAAATAATAACAATGCATACCCCGAAAGGACGAACCTGATCACTAATACTAATGACACTAATC ATATTTATTGCTTCAACCAACCTACTTGGACTATTACCACATTCATTTACACCAACTACACAACTATCAA TAAACTTAGGTATAGCAATCCCTTTATGATTCGCTACAGTAGTTCTAGGTTTTCGACATAAAGCAAAAAA ATCACTCGCCCATTTTCTTCCTCAAGGAACACCTATCCCATTAATCCCTATACTCATTATTATTGAAACA ATTAGCCTTTTTATTCAACCAGTAGCCTTAGCTGTACGACTAACAGCTAACATCACTGCAGGCCACTTAT TAATTCACCTAATTAGCGCTGCAACATTAACACTAATATCTATTAACTTTCCTACCGCTACAATCTTATT TACTATTCTTATTCTACTTACTATCCTTGAACTAGCCGTAGCAGTAATCCAAGCATATGTATTTACACTT CTTGTCAGCCTATATCTACATGACAATACATAATGACACACCAAACACACGCTTACCATATAGTAAACCC AAGTCCATGACCCCTCACCGGAGCATTATCTGCCCTCTTACTAACATCAGGTATAATTATATGATTTCAT TTCAACTCTAACTCCCTACTAATAATAGGTCTTCTAGGCAACGCACTAACAATATATCAATGATGACGTG ACATTATTCGAGAGGGCACATTCCAAGGACATCACACATCAATTGTTCAAAAAGGACTTCGATATGGAAT AATCTTATTTATCATCTCAGAAGTCCTTTTTTTCTCAGGGTTTTTCTGAGCATTCTACCATTCCAGCTTA GCCCCAACCCCAGAACTAGGAGGTCACTGACCACCAACAGGAATTAATCCCTTAAACCCACTTGAAGTAC CCTTACTAAATACATCCGTACTCCTAGCATCTGGAGTTTCAATTACTTGAGCACATCACAGCCTCATAGA AGGTAATCGAAAACACATAATCCAAGCTTTACTAATCACTATTATTCTAGGAATTTACTTCACAATTCTA CAAATATCAGAATACTATGAGTCATCATTTACCATTTCAGACGGCATTTACGGATCAACATTTTTCGTTG CCACAGGGTTTCATGGATTACACGTGATTATTGGAACCACATTTCTCACCGTATGTTTATTACGACAACT CTACTACCACTTCACATCAAGCCATCACTTCGGATTTGAAGCAGCAGCATGATACTGACATTTTGTTGAT GTAGTATGACTTTTCCTATATGTATCCATCTACTGATGAGGCTCATATTTCTTTAGTATAACAAATACCA CTGACTTCCAATCAGCCAATTCTAGTCCAAACCTAGAAAGAAATAATAAACATAATATTAGCTCTATCAT TCAACTATCTATTAACACTATTACTTATCACTATCGCTTTCTGGATACCCCAAACCAATATTTACACTGA AAAAGCCAGCCCCTATGAATGTGGATTTGACCCAACAGAATCAGCACGACTACCTTTCTCTATAAAATTT TTCTTAATTGCCATCACATTTTTGCTATTTGACCTAGAAATTGCTCTTCTTCTACCCCTCCCCTGAGCCT TACAAACCAATAACCTTCCCCTAATAACTATAGCCTCACTCATACTAGTATTCATTCTAGCATTAGGCCT AATATACGAATGACTTCAAAACGGACTGGAATGAAATGAATATGGTAATTAGTTTAATACCAAAACAAAT GATTTCGACTCATTAAATTATGTATCCATCCATAATTACCAAAATGTCTACCATCCTCATAAACATAATT TCAGCTTACATTATCTCTTTCTTAGGTACTATAATCTATCGATCCCATATAATATCTTCCCTCCTATGCT TAGAAGGAATAATACTCTCCATATTTATCCTAAGCACTCTTACAATATTAAATCTTCATTACGTATCATT CATAGCAATTCCCACTATCCTATTAGTATTCGCTGCCTGCGAAGCTGCAATTGGCCTAGCACTATTAGTG ATAATTTCAAACACCTATGGTACTGACTACGTTCAGAATCTAAATCTACTACAATGCTAAAAATTATCTT TCCCACTATTATGTTAATCCCTATTACATGACTATCCAAACCCAATATAATCTGAATAAACTCTTCCTCC CACAGCCTAATAATTGCCCTAATTACAATCCCAATAATTACCCAATTAGACATTAACAGCCACAACCTCT CTACAATATTCTCATCAGATTCACTATCTTCTCCCCTATTAATCCTTACAACATGACTTCTCCCATTAAC AATTATTGCAAGTCAACATCACCTAAAACAGGAACCACTTTATCGAAAAAAAATTTATATTACTTTATTA ATCTCTCTACACACCATACTCATCATAACATTTACTGCCTCAGAAATAATCTTGTTTTATGTATTATTTG AAGCTACCCTAATCCCAACACTAATCGTCATCACACGTTGGGGAAATCAAACAGAACGGATAAACGCAGG TCTTTACTTTCTATTTTATACCTTAATTGCTTCTCTTCCACTCCTAGTAGCACTTCTTTACTTACAAAAT TCAACAGGCTCACTAAACTTTCTATTATACAAACTAAAAGCACTACCTTTACTCCCCACATGATCAAACG ACCTACTATGACTAGCATGCATTATAGCTTTTATAGTTAAACTCCCTATATATGGATTACACTTATGATT ACCAAAAGCACACGTAGAAGCCCCAATTGCAGGGTCCATAGTACTAGCTGCTATCTTACTGAAACTAGGC GGCTATGGTATAATACGAATTTCACAACTTCTTGACCCTTTAACCAATACAATAATATACCCTTTCATCA TACTCTCACTATGAGGAATACTTATAACTAGCTCAATTTGTCTACGCCAAACAGATCTGAAATCGTTAAT TGCATATTCCTCAGTTAGTCACATAGCCTTAGTAATTGTTGCTATCCTAATTCAAACCCCACTAAGTTAT GCAGGCGCTACTACACTGATAATTGCCCATGGATTAACCTCATCCCTCTTATTCTGCCTTGCAAACTCCA ACTACGAACGAACACACAGCCGAACTATATTACTTGCCCGCGGACTACAAGTTATCCTCCCACTTATGGC CCTATGATGAATATTATCAAGCTTCAGTAACCTGGCCCTTCCCCCAACAATTAACCTTCTAGGAGAAATA ATAATTATCATTTCCTCCTTCTCCTGATCTAACTTCACTATACTATTTATAGCTCTCAATATGCTAGTCA CAGCAATATACTCTCTATATATATTAATCTCAACACAACGAGGAACTCCTCCCTACCATATCCACAATAT TACCCCCTCTTACACACGAGAAAATATACTCATAACATTACACCTGCTTCCCCTATTCCTTACCATAATA AACCCAAAAATCATCATGGGGTTTACAATCTGTAATTATAGTTTAACAAAAACATTAGACTGTGAATCTA ACAATAAAAGATTATACTTTTTAATTACCAAGAAAGTAGCTAGGAACTGCTAACTCCTACTTCTACAAAT AAAACTGTAGCTTTCTTACACAGTTTCTATTAATAATTCTATAACAACCCTCATAAATAACTCCACACAT TCTCCCAACCAATTTAACTAATAAGCCTCATAATTTACTCATAAACCCACTATTACATGCCCACAACCAA TACCAAATAAATAAAACCAATAACCCTAAACCTAGCAATATAAATTGTTCTATAATCAACTCCAATTATC ACATAACTATTACAAACAACAACTTTTATAGGATAGAAGTAATCCATTAGTCTTAGGAACTAAAAAATTG GTGCAACTCCAAATAAAAGTAATTAACCTATTATCCTCCCTATTCATAATATCCCTCCTCATTTTAATCA TCCCAATCATTATCCCCTCATGTATCTTACCTAAATCATGAAACTACCCCTCCTATATCAAAACCATTGT TGCCTTATCCTTCTCACTAAGCATAATTCCTACCCTTATATTAATTTACTTCGAAGGAGAAGGAATAATC TCGAACTGAAACTGAATCTCAATACAAACTTTCAACATTAATATAAGCTTCAAATTAGACTACTTTTCTA TCCTATTTATATCAGTAGCCCTCTTCGTAACATGATCAATCATAGAATTTTCCTTATGATATATACACTC AGACCCTTACATCAACCTATTCTTCAAATATTTAATTATATTCCTCATCACAATAATAATTTTAGTAACT GCTAACAACATCTTCCAACTTTTTATTGGTTGGGAAGGAGTCGGCATTATATCTTTCCTACTAATTGGAT GGTGACTTAGCCGATCAGAAGCTAACACCGCTGCCCTCCAAGCAATCCTTTATAATCGAATTGGAGACAT TGGATTAATTATTTCCATAACATGATTCTTACTAAACAGTAATTCATGAGAAATACAACAAATATTTATA ACACACAACAAAATTGATATTTTACCAATACTGGGCCTACTACTTGCAGCAACCGGCAAATCAGCTCAAT TCGGCCTTCACCCATGACTACCCGCAGCAATAGAGGGTCCAACTCCAGTATCCGCATTACTACACTCAAG TACTATAGTTGTAGCAGGAATTTTTTTACTCATTCGATTTTACCCCCTACTTACTCTAAACGAATCAATT ATGACCTTATCCCTATGTCTAGGTGCTATTACAACACTATTTACCGCCCTCTGCGCAATTACACAAAACG ATATCAAAAAAATCATCGCATTCTCAACTTCCAGTCAACTAGGACTAATAATAGTAACTATTGGAATCAA TCAACCCCATCTAGCATTTCTCCACATCTGCATACATGCATTTTTCAAAGCAATACTATTCATATGCTCT GGGTCCATTATTCATAGCCTAAATAATGAACAAGACATTCGAAAAATAGGAGGCCTATATAAAACAATAC CATTTACATCTTCTGCTATAATCATTGGAAGCCTAGCCTTAACAGGAATCCCTTTCCTTACAGGCTTTTA CTCAAAAGACTTAATCATCGAATCCATATCAACCTCCTACCTCAATGCCTGAGCACTCCTCCTAACAATA ATTGCAACTTCCTTTACAGCAGTCTACAGTATACGGATCATCTTTTACCCTTTACTTAATTATCCTAATT ATAATTCACCAATAAATATTAACGAAAACAACCCACAACTAATTAATCCAATTAAACGCCTAGCAATCGG AAGCATCTTTGCAGGATTCTTTATTTCTAACAGTATTATCCCAATAAACATGCCTCAAATAACAATACCC TTATATATTAAACTCACCGCAATTACAGTAACTCTCCTTGGATTCATGCTAGCAATTGAACTAAACAACA TATCCTACAACCTCAAACCATTCCACCATTCAAAATCATCAATATTCTCAACTATACTAGGCTTCTACCC AACAATTATACATCGGCTCATTCCCCTATACAAACTTTTAACTAGCCAAAACCTAGCAACCTCCTCTATA GACATAACATGACTAGAAAAAACAATTCCCAAAACCATCTCAAATATCAACATCACATTATCCAGCATAT CAACTAATCAACTAGGACTTATTAAAATTTATTTTATATCATTTTTAATTTCCTTAACCATCTCCATTAT AATTACAACATAACCTCCCCCGAGTAATCTCAATAATGATAAAAATACCAGCAAACAATGTTCACCCTCC AATAAATAATAATCAACAATTATAACTGTAAATAGTTGCAACCCCAGCAGGATCACCTCTAAAAACCCAA CCCCCTTATCACTATCATATACAACTCATTCCCCTATGCTATTATACTGAACTAAGGCTTCCACTTGATC ATTAACAACTCAATTATAAATTATCAGTAACTCCATTAATAAACCTATAAAAGTAGCACTTCAGATAATC ACATTAGACCCTCATGAGTCCGGGTACTGATCTGTAGCCATAGCAGTCGTATAACCAAACACCACCATCA TACCACCTAAATATACTAAAAACACCATTAAGCCCAAAAATGACCCACCATAACTTAAAATAATAAAACA TCCCACCCCACCACTAACAATTAAAGCTAATCCTCCATATACTGGAGAAGGCTTAACTGAAAATCCAATA TAACAAATAACAAAAGCAACACTTAAAAAGTATACAATATTCAAAATCATAATTCTCACATGGACTCCAA CCATGACCAATGACATGAAAAATCACCGTTGTATTTCAACTACAAGAACCTAATGAAAATTACCCGAAAA GCCCACCCACTACTAAAAATAATTAATCACTCATTCATTGATTTACCCACACCACCAAACATCTCATCAT GATGAAACTTTGGATCCCTCCTAGGCGCTTGCTTAGCTTTACAAATCCTTACAGGCCTATTTCTAGCAAT ACACTACACAGCAGACACAACAACAGCATTTTCATCCGTTACTCACATTTGTCGAGACGTAAACTACGGA TGACTCATCCGATACTTACACGCCAACGGAGCATCAATATTCTTTATCTGCTTATACCTGCACGTAGCAC GAGGTATATATTACGGATCATACATATTTCTAGAAACTTGAAATTTAGGAGTAATTCTACTACTTTTTGT TATAGCAACCGCTTTCATAGGATACGTTCTTCCCTGAGGACAAATATCTTTCTGAGGTGCAACTGTCATC ACAAATCTCCTCTCAGCCATCCCATACATCGGACCTACCCTAGTAGAATGAGTCTGGGGAGGATTCTCTG TAGACAAAGCAACCTTAACCCGATTTTTCGCCCTCCATTTCATCCTTCCCTTCATTATCACCGCCCTAAC AATAGTTCACCTACTATTCCTTCATGAAACAGGATCAAACAACCCAACAGGACTAAACTCAGACTGCGAC AAAATTCCATTCCATCCTTACTACTCAATAAAAGACTTGATTGGACTCTTACTATTATTTTTCTTCCTAT TATTACTCGTCCTATTTTTCCCAGACATTTTAGGAGACCCTGACAACTACACACCCGCCAACCCCCTAAA CACTCCCCCACACATTAAGCCTGAATGATACTTTCTATTTGCTTACGCCATCCTCCGCTCAATCCCCAAC AAACTTGGAGGAGTCCTAGCCCTTCTCCTCTCTATCCTAATTCTTATAATTATCCCTTTTATCCACTTAT CAAAACAACGAAGCATATCATTCCGTCCACTAAGCCAATGCTTATTCTGAACTCTAGCCGCCAACTTAAT TATTCTCACTTGAATTGGAGGCCAACCGGTTGAGCACCCTTACATTACAATTGGGCAAGTGGCATCAATC CTATACTTTACAATTATTTTAATCCTAATACCATTAGCAAGCCTTATTGAAAATAAAATCCTTAAATGAT AGCTCTAGTAGTATAAACATTACATAGGTCTTGTAAACCTAAAAAGGAAAATTCAAACATTCCCTAGAAC AACTCAAGGAAGAAAAAGTCATTTCCACCGCCAACTCCCAAAGCTGATGTTCTAATTAAACTATTCCTTG AATCCTTTCATATAATGTATCAAAATCAATAAAATCACAACATGCAATTATCTCCCCCCCATATGTATTA TCAACATTAATTATTTAGACCATGGATAATAAGCATGTACTGTAGATTCATGCATAAAATACATTTAATG TATGATATAAGACATAATAATGTATCACTCCACATAAACCTCATTTCCTCATGTCTATTCTTGTCTACTT AACCATTAATGACTATCCAAATAAATCTCCGTGATATAGACATAGACCATTAAGTCAAATCTTTTCTAAG GCCATACGACTATCACTTTCCATTAGTTAGTCTCTTGACTACCATCCTCCGTGAAACCATCAACCCGCCA GACAGGTGTTACCTCTTCTTGCCACGGGCCCATAAATCGTGGGTGTGACAAAAGTGTACTTCAATAGGCA GCTGGTTCCTTCTTCAGGGCCATGGTATGTCAACCAATCATACGTTCCCCTTAAATGAGACATTTGTGAT GATGTTGGTGCCCCCAAGTCCGTGATCGCGGCATTTTAAGGAACTGTCTACATTTGGTATCTTTTATTTT TCGGTATTCCTGCCTCACCATGGGCCGTCAAGGCCTGGAGCGCTACCGGATCAATTGTAGTATGAACTTA TTAGTCAAATTGTATAATCCCCATAATAAAAACCTTGCTTGTGTACTCTGTTAATGCTTGCAAGACATAC CCGCCTGAGCAGTATTAACCCACTTATTGACCGCATTACTTCAGATGGACATTCATTTAATGCTTATAAG ACATAAACACTCTCCCAAAAAATTTTAACTGCTATCTGCCTATTTCTGAAAAATTTTAACTTATTCATAG AGTGTATTTATAATTATAAATATATAACACAGAAGTACCCAGCATAACCAGCTACATGAATCTCAGCCCA TTCTATGAAACATACTATAACTATATACATATTTAA
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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