Viewing data for Hemitheconyx caudicinctus


Scientific name Hemitheconyx caudicinctus
Common name African fat-tailed gecko
Maximum lifespan 16.20 years (Hemitheconyx caudicinctus@AnAge)

Total mtDNA (size: 17043 bases) GC AT G C A T
Base content (bases) 7805 9238 5266 2539 4135 5103
Base content per 1 kb (bases) 458 542 309 149 243 299
Base content (%) 45.8% 54.2%
Total protein-coding genes (size: 11318 bases) GC AT G C A T
Base content (bases) 5264 6054 3696 1568 2765 3289
Base content per 1 kb (bases) 465 535 327 139 244 291
Base content (%) 46.5% 53.5%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1476 bases) GC AT G C A T
Base content (bases) 662 814 399 263 359 455
Base content per 1 kb (bases) 449 551 270 178 243 308
Base content (%) 44.9% 55.1%
Total rRNA-coding genes (size: 2469 bases) GC AT G C A T
Base content (bases) 1175 1294 718 457 481 813
Base content per 1 kb (bases) 476 524 291 185 195 329
Base content (%) 47.6% 52.4%
12S rRNA gene (size: 946 bases) GC AT G C A T
Base content (bases) 480 466 283 197 188 278
Base content per 1 kb (bases) 507 493 299 208 199 294
Base content (%) 50.7% 49.3%
16S rRNA gene (size: 1523 bases) GC AT G C A T
Base content (bases) 695 828 435 260 293 535
Base content per 1 kb (bases) 456 544 286 171 192 351
Base content (%) 45.6% 54.4%

ATP6 (size: 680 bases) GC AT G C A T
Base content (bases) 325 355 230 95 166 189
Base content per 1 kb (bases) 478 522 338 140 244 278
Base content (%) 47.8% 52.2%
ATP8 (size: 162 bases) GC AT G C A T
Base content (bases) 71 91 50 21 41 50
Base content per 1 kb (bases) 438 562 309 130 253 309
Base content (%) 43.8% 56.2%
COX1 (size: 1575 bases) GC AT G C A T
Base content (bases) 749 826 485 264 422 404
Base content per 1 kb (bases) 476 524 308 168 268 257
Base content (%) 47.6% 52.4%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 331 353 218 113 155 198
Base content per 1 kb (bases) 484 516 319 165 227 289
Base content (%) 48.4% 51.6%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 386 398 257 129 188 210
Base content per 1 kb (bases) 492 508 328 165 240 268
Base content (%) 49.2% 50.8%
CYTB (size: 1136 bases) GC AT G C A T
Base content (bases) 514 622 363 151 305 317
Base content per 1 kb (bases) 452 548 320 133 268 279
Base content (%) 45.2% 54.8%
ND1 (size: 960 bases) GC AT G C A T
Base content (bases) 448 512 319 129 227 285
Base content per 1 kb (bases) 467 533 332 134 236 297
Base content (%) 46.7% 53.3%
ND2 (size: 1050 bases) GC AT G C A T
Base content (bases) 492 558 359 133 247 311
Base content per 1 kb (bases) 469 531 342 127 235 296
Base content (%) 46.9% 53.1%
ND3 (size: 340 bases) GC AT G C A T
Base content (bases) 153 187 100 53 92 95
Base content per 1 kb (bases) 450 550 294 156 271 279
Base content (%) 45.0% 55.0%
ND4 (size: 1369 bases) GC AT G C A T
Base content (bases) 640 729 480 160 342 387
Base content per 1 kb (bases) 467 533 351 117 250 283
Base content (%) 46.7% 53.3%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 131 166 88 43 70 96
Base content per 1 kb (bases) 441 559 296 145 236 323
Base content (%) 44.1% 55.9%
ND5 (size: 1788 bases) GC AT G C A T
Base content (bases) 802 986 584 218 440 546
Base content per 1 kb (bases) 449 551 327 122 246 305
Base content (%) 44.9% 55.1%
ND6 (size: 510 bases) GC AT G C A T
Base content (bases) 225 285 164 61 76 209
Base content per 1 kb (bases) 441 559 322 120 149 410
Base content (%) 44.1% 55.9%

ATP6 (size: 680 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (4.0%)
Alanine (Ala, A)
n = 22 (9.78%)
Serine (Ser, S)
n = 8 (3.56%)
Threonine (Thr, T)
n = 21 (9.33%)
Cysteine (Cys, C)
n = 1 (0.44%)
Valine (Val, V)
n = 9 (4.0%)
Leucine (Leu, L)
n = 57 (25.33%)
Isoleucine (Ile, I)
n = 23 (10.22%)
Methionine (Met, M)
n = 9 (4.0%)
Proline (Pro, P)
n = 17 (7.56%)
Phenylalanine (Phe, F)
n = 6 (2.67%)
Tyrosine (Tyr, Y)
n = 3 (1.33%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (2.22%)
Asparagine (Asn, N)
n = 9 (4.0%)
Glutamine (Gln, Q)
n = 9 (4.0%)
Histidine (His, H)
n = 4 (1.78%)
Lysine (Lys, K)
n = 5 (2.22%)
Arginine (Arg, R)
n = 6 (2.67%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 15 7 4 13 23 6 8 5 4 3 3 1 2 4 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 4 9 9 0 2 2 2 3 0 10 6 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 6 2 1 2 0 0 0 5 3 0 1 3 3 6 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 4 1 0 0 4 1 0 2 4 0 0 0 0 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
45 82 72 27
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
24 63 35 104
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
26 85 81 34
ATP8 (size: 162 bases)
Amino acid sequence: MPQLNPAPWFLILMSTWVSYLALTELTCSTLYPNPLPPVKVTKMTNSWHWSWS*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 2 (3.77%)
Serine (Ser, S)
n = 6 (11.32%)
Threonine (Thr, T)
n = 6 (11.32%)
Cysteine (Cys, C)
n = 1 (1.89%)
Valine (Val, V)
n = 3 (5.66%)
Leucine (Leu, L)
n = 8 (15.09%)
Isoleucine (Ile, I)
n = 1 (1.89%)
Methionine (Met, M)
n = 3 (5.66%)
Proline (Pro, P)
n = 7 (13.21%)
Phenylalanine (Phe, F)
n = 1 (1.89%)
Tyrosine (Tyr, Y)
n = 2 (3.77%)
Tryptophan (Trp, W)
n = 5 (9.43%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 1 (1.89%)
Asparagine (Asn, N)
n = 3 (5.66%)
Glutamine (Gln, Q)
n = 1 (1.89%)
Histidine (His, H)
n = 1 (1.89%)
Lysine (Lys, K)
n = 2 (3.77%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
0 1 1 1 0 4 1 2 1 0 0 0 1 2 1 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 1 1 1 0 0 0 0 0 0 3 2 1 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 2 1 0 2 3 0 0 1 1 1 0 0 0 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 0 1 0 0 2 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
6 15 16 17
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
7 20 11 16
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
8 15 23 8
COX1 (size: 1575 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 44 (8.4%)
Alanine (Ala, A)
n = 45 (8.59%)
Serine (Ser, S)
n = 29 (5.53%)
Threonine (Thr, T)
n = 44 (8.4%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 30 (5.73%)
Leucine (Leu, L)
n = 63 (12.02%)
Isoleucine (Ile, I)
n = 41 (7.82%)
Methionine (Met, M)
n = 27 (5.15%)
Proline (Pro, P)
n = 33 (6.3%)
Phenylalanine (Phe, F)
n = 41 (7.82%)
Tyrosine (Tyr, Y)
n = 19 (3.63%)
Tryptophan (Trp, W)
n = 17 (3.24%)
Aspartic acid (Asp, D)
n = 15 (2.86%)
Glutamic acid (Glu, E)
n = 7 (1.34%)
Asparagine (Asn, N)
n = 19 (3.63%)
Glutamine (Gln, Q)
n = 6 (1.15%)
Histidine (His, H)
n = 21 (4.01%)
Lysine (Lys, K)
n = 11 (2.1%)
Arginine (Arg, R)
n = 11 (2.1%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 26 18 14 8 27 3 9 6 0 11 8 10 1 13 28
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 0 1 8 23 10 4 3 24 7 10 2 13 15 3 10
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 14 2 6 7 11 1 0 4 8 11 4 2 7 12 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
17 5 2 1 14 9 2 3 1 5 2 0 0 0 1 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
141 123 146 115
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 147 99 202
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
46 215 159 105
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.85%)
Alanine (Ala, A)
n = 18 (7.93%)
Serine (Ser, S)
n = 12 (5.29%)
Threonine (Thr, T)
n = 23 (10.13%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 17 (7.49%)
Leucine (Leu, L)
n = 29 (12.78%)
Isoleucine (Ile, I)
n = 15 (6.61%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 8 (3.52%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 10 (4.41%)
Glutamic acid (Glu, E)
n = 11 (4.85%)
Asparagine (Asn, N)
n = 7 (3.08%)
Glutamine (Gln, Q)
n = 9 (3.96%)
Histidine (His, H)
n = 8 (3.52%)
Lysine (Lys, K)
n = 3 (1.32%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 9 8 6 8 8 2 4 8 1 4 4 4 5 3 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 2 3 9 5 1 1 6 2 2 2 6 6 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 12 1 2 3 4 0 0 3 2 7 0 1 2 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 9 2 3 7 2 1 1 3 2 0 0 0 0 1 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 61 61 39
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
27 64 58 79
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 93 79 37
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.46%)
Alanine (Ala, A)
n = 19 (7.31%)
Serine (Ser, S)
n = 13 (5.0%)
Threonine (Thr, T)
n = 36 (13.85%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 14 (5.38%)
Leucine (Leu, L)
n = 32 (12.31%)
Isoleucine (Ile, I)
n = 15 (5.77%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 10 (3.85%)
Phenylalanine (Phe, F)
n = 20 (7.69%)
Tyrosine (Tyr, Y)
n = 9 (3.46%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 6 (2.31%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 19 (7.31%)
Lysine (Lys, K)
n = 1 (0.38%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 9 5 7 4 13 1 7 7 2 4 6 3 1 7 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 3 12 3 1 1 11 6 4 1 4 3 2 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 16 1 2 2 6 0 0 3 2 7 2 0 0 6 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
16 5 2 1 2 0 1 0 1 3 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
65 68 69 59
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 75 54 89
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 114 87 39
CYTB (size: 1136 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.37%)
Alanine (Ala, A)
n = 24 (6.37%)
Serine (Ser, S)
n = 22 (5.84%)
Threonine (Thr, T)
n = 32 (8.49%)
Cysteine (Cys, C)
n = 3 (0.8%)
Valine (Val, V)
n = 17 (4.51%)
Leucine (Leu, L)
n = 63 (16.71%)
Isoleucine (Ile, I)
n = 31 (8.22%)
Methionine (Met, M)
n = 13 (3.45%)
Proline (Pro, P)
n = 25 (6.63%)
Phenylalanine (Phe, F)
n = 29 (7.69%)
Tyrosine (Tyr, Y)
n = 15 (3.98%)
Tryptophan (Trp, W)
n = 11 (2.92%)
Aspartic acid (Asp, D)
n = 6 (1.59%)
Glutamic acid (Glu, E)
n = 5 (1.33%)
Asparagine (Asn, N)
n = 19 (5.04%)
Glutamine (Gln, Q)
n = 8 (2.12%)
Histidine (His, H)
n = 14 (3.71%)
Lysine (Lys, K)
n = 9 (2.39%)
Arginine (Arg, R)
n = 8 (2.12%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 18 10 10 13 22 7 10 5 3 3 10 4 0 10 19
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 3 3 9 12 0 1 12 7 4 0 7 16 2 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 14 0 2 6 10 2 0 2 4 11 3 1 3 16 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 5 0 2 4 8 1 1 3 3 1 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
76 107 106 89
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
48 101 76 153
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 155 134 62
ND1 (size: 960 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (5.02%)
Alanine (Ala, A)
n = 31 (9.72%)
Serine (Ser, S)
n = 22 (6.9%)
Threonine (Thr, T)
n = 45 (14.11%)
Cysteine (Cys, C)
n = 2 (0.63%)
Valine (Val, V)
n = 12 (3.76%)
Leucine (Leu, L)
n = 52 (16.3%)
Isoleucine (Ile, I)
n = 22 (6.9%)
Methionine (Met, M)
n = 19 (5.96%)
Proline (Pro, P)
n = 20 (6.27%)
Phenylalanine (Phe, F)
n = 13 (4.08%)
Tyrosine (Tyr, Y)
n = 10 (3.13%)
Tryptophan (Trp, W)
n = 7 (2.19%)
Aspartic acid (Asp, D)
n = 4 (1.25%)
Glutamic acid (Glu, E)
n = 11 (3.45%)
Asparagine (Asn, N)
n = 8 (2.51%)
Glutamine (Gln, Q)
n = 9 (2.82%)
Histidine (His, H)
n = 2 (0.63%)
Lysine (Lys, K)
n = 6 (1.88%)
Arginine (Arg, R)
n = 8 (2.51%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 12 14 9 12 14 5 10 9 0 5 2 5 0 4 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 2 1 19 11 0 1 8 6 1 2 8 10 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
17 21 1 0 13 7 0 0 2 4 6 2 2 2 6 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 8 3 0 4 5 1 0 2 6 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 79 102 65
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 116 51 118
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 124 132 44
ND2 (size: 1050 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.3%)
Alanine (Ala, A)
n = 32 (9.17%)
Serine (Ser, S)
n = 27 (7.74%)
Threonine (Thr, T)
n = 41 (11.75%)
Cysteine (Cys, C)
n = 2 (0.57%)
Valine (Val, V)
n = 6 (1.72%)
Leucine (Leu, L)
n = 72 (20.63%)
Isoleucine (Ile, I)
n = 27 (7.74%)
Methionine (Met, M)
n = 24 (6.88%)
Proline (Pro, P)
n = 20 (5.73%)
Phenylalanine (Phe, F)
n = 12 (3.44%)
Tyrosine (Tyr, Y)
n = 6 (1.72%)
Tryptophan (Trp, W)
n = 12 (3.44%)
Aspartic acid (Asp, D)
n = 2 (0.57%)
Glutamic acid (Glu, E)
n = 8 (2.29%)
Asparagine (Asn, N)
n = 6 (1.72%)
Glutamine (Gln, Q)
n = 7 (2.01%)
Histidine (His, H)
n = 11 (3.15%)
Lysine (Lys, K)
n = 14 (4.01%)
Arginine (Arg, R)
n = 5 (1.43%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 17 15 12 21 26 6 6 7 0 1 3 2 0 5 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 1 1 3 19 9 1 1 3 10 1 4 6 7 3 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
21 12 0 1 9 9 0 0 8 0 6 2 1 1 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 8 0 0 2 12 2 0 1 3 1 0 1 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
63 108 121 58
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 112 54 141
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 139 136 48
ND3 (size: 1050 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.3%)
Alanine (Ala, A)
n = 32 (9.17%)
Serine (Ser, S)
n = 27 (7.74%)
Threonine (Thr, T)
n = 41 (11.75%)
Cysteine (Cys, C)
n = 2 (0.57%)
Valine (Val, V)
n = 6 (1.72%)
Leucine (Leu, L)
n = 72 (20.63%)
Isoleucine (Ile, I)
n = 27 (7.74%)
Methionine (Met, M)
n = 24 (6.88%)
Proline (Pro, P)
n = 20 (5.73%)
Phenylalanine (Phe, F)
n = 12 (3.44%)
Tyrosine (Tyr, Y)
n = 6 (1.72%)
Tryptophan (Trp, W)
n = 12 (3.44%)
Aspartic acid (Asp, D)
n = 2 (0.57%)
Glutamic acid (Glu, E)
n = 8 (2.29%)
Asparagine (Asn, N)
n = 6 (1.72%)
Glutamine (Gln, Q)
n = 7 (2.01%)
Histidine (His, H)
n = 11 (3.15%)
Lysine (Lys, K)
n = 14 (4.01%)
Arginine (Arg, R)
n = 5 (1.43%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 17 15 12 21 26 6 6 7 0 1 3 2 0 5 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 1 1 3 19 9 1 1 3 10 1 4 6 7 3 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
21 12 0 1 9 9 0 0 8 0 6 2 1 1 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 8 0 0 2 12 2 0 1 3 1 0 1 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
63 108 121 58
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 112 54 141
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
27 139 136 48
ND4 (size: 1369 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (4.62%)
Alanine (Ala, A)
n = 33 (7.25%)
Serine (Ser, S)
n = 36 (7.91%)
Threonine (Thr, T)
n = 52 (11.43%)
Cysteine (Cys, C)
n = 5 (1.1%)
Valine (Val, V)
n = 10 (2.2%)
Leucine (Leu, L)
n = 98 (21.54%)
Isoleucine (Ile, I)
n = 35 (7.69%)
Methionine (Met, M)
n = 31 (6.81%)
Proline (Pro, P)
n = 26 (5.71%)
Phenylalanine (Phe, F)
n = 14 (3.08%)
Tyrosine (Tyr, Y)
n = 15 (3.3%)
Tryptophan (Trp, W)
n = 8 (1.76%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 7 (1.54%)
Asparagine (Asn, N)
n = 16 (3.52%)
Glutamine (Gln, Q)
n = 10 (2.2%)
Histidine (His, H)
n = 15 (3.3%)
Lysine (Lys, K)
n = 11 (2.42%)
Arginine (Arg, R)
n = 10 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 24 25 20 24 32 8 14 9 1 5 1 1 3 5 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 1 4 5 19 8 1 2 11 6 2 1 18 7 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
24 20 2 3 15 5 2 2 9 4 11 3 0 3 13 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 6 1 1 2 11 0 0 3 5 2 0 0 0 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 145 156 81
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
55 136 77 188
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
31 199 154 72
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 9 (9.18%)
Serine (Ser, S)
n = 10 (10.2%)
Threonine (Thr, T)
n = 19 (19.39%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 17 (17.35%)
Isoleucine (Ile, I)
n = 4 (4.08%)
Methionine (Met, M)
n = 9 (9.18%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 3 (3.06%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 1 (1.02%)
Lysine (Lys, K)
n = 3 (3.06%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 3 5 3 2 6 2 3 2 1 1 0 0 0 2 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 2 1 3 2 4 0 1 2 1 0 0 0 2 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 9 2 0 4 0 0 1 5 0 1 0 1 0 3 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 1 0 0 2 1 0 0 2 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
16 21 44 18
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
15 34 14 36
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 33 38 16
ND5 (size: 1788 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (4.71%)
Alanine (Ala, A)
n = 50 (8.4%)
Serine (Ser, S)
n = 47 (7.9%)
Threonine (Thr, T)
n = 76 (12.77%)
Cysteine (Cys, C)
n = 5 (0.84%)
Valine (Val, V)
n = 14 (2.35%)
Leucine (Leu, L)
n = 110 (18.49%)
Isoleucine (Ile, I)
n = 41 (6.89%)
Methionine (Met, M)
n = 25 (4.2%)
Proline (Pro, P)
n = 32 (5.38%)
Phenylalanine (Phe, F)
n = 35 (5.88%)
Tyrosine (Tyr, Y)
n = 12 (2.02%)
Tryptophan (Trp, W)
n = 11 (1.85%)
Aspartic acid (Asp, D)
n = 8 (1.34%)
Glutamic acid (Glu, E)
n = 11 (1.85%)
Asparagine (Asn, N)
n = 30 (5.04%)
Glutamine (Gln, Q)
n = 18 (3.03%)
Histidine (His, H)
n = 10 (1.68%)
Lysine (Lys, K)
n = 22 (3.7%)
Arginine (Arg, R)
n = 10 (1.68%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
18 23 20 21 23 44 9 12 15 3 2 9 2 1 10 25
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 1 4 7 23 20 0 0 16 8 4 3 11 17 1 14
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
24 33 5 9 10 13 0 3 12 4 8 2 1 8 22 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 6 5 5 3 22 0 0 5 4 1 0 0 0 1 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
111 167 209 109
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
69 190 112 225
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
38 227 225 106
ND6 (size: 510 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 22 (13.02%)
Alanine (Ala, A)
n = 8 (4.73%)
Serine (Ser, S)
n = 16 (9.47%)
Threonine (Thr, T)
n = 2 (1.18%)
Cysteine (Cys, C)
n = 4 (2.37%)
Valine (Val, V)
n = 36 (21.3%)
Leucine (Leu, L)
n = 26 (15.38%)
Isoleucine (Ile, I)
n = 6 (3.55%)
Methionine (Met, M)
n = 6 (3.55%)
Proline (Pro, P)
n = 4 (2.37%)
Phenylalanine (Phe, F)
n = 10 (5.92%)
Tyrosine (Tyr, Y)
n = 7 (4.14%)
Tryptophan (Trp, W)
n = 4 (2.37%)
Aspartic acid (Asp, D)
n = 2 (1.18%)
Glutamic acid (Glu, E)
n = 7 (4.14%)
Asparagine (Asn, N)
n = 2 (1.18%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 2 (1.18%)
Lysine (Lys, K)
n = 3 (1.78%)
Arginine (Arg, R)
n = 2 (1.18%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 0 3 5 0 4 2 7 0 0 18 1 7 10 9 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 2 2 3 3 1 1 5 0 2 15 1 1 1 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 0 8 2 1 2 2 1 4 3 3 8 1 1 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 5 2 0 0 3 1 0 1 0 0 0 0 1 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
75 19 22 54
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
35 27 24 84
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
54 15 30 71
Total protein-coding genes (size: 11335 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 221 (5.85%)
Alanine (Ala, A)
n = 305 (8.08%)
Serine (Ser, S)
n = 254 (6.73%)
Threonine (Thr, T)
n = 408 (10.81%)
Cysteine (Cys, C)
n = 31 (0.82%)
Valine (Val, V)
n = 172 (4.56%)
Leucine (Leu, L)
n = 649 (17.19%)
Isoleucine (Ile, I)
n = 271 (7.18%)
Methionine (Met, M)
n = 189 (5.01%)
Proline (Pro, P)
n = 219 (5.8%)
Phenylalanine (Phe, F)
n = 199 (5.27%)
Tyrosine (Tyr, Y)
n = 111 (2.94%)
Tryptophan (Trp, W)
n = 99 (2.62%)
Aspartic acid (Asp, D)
n = 56 (1.48%)
Glutamic acid (Glu, E)
n = 87 (2.3%)
Asparagine (Asn, N)
n = 133 (3.52%)
Glutamine (Gln, Q)
n = 90 (2.38%)
Histidine (His, H)
n = 108 (2.86%)
Lysine (Lys, K)
n = 91 (2.41%)
Arginine (Arg, R)
n = 75 (1.99%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
109 162 135 113 131 232 54 97 75 15 58 49 40 25 77 122
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
54 7 24 45 156 95 9 18 95 60 48 20 91 94 14 62
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
163 166 17 34 77 71 8 8 56 39 72 23 22 33 100 18
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
90 61 26 16 40 78 13 6 22 39 8 0 1 3 4 76
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
841 1022 1157 756
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
491 1122 683 1480
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
341 1450 1322 663 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​H​e​m​i​t​h​e​c​o​n​y​x​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ c​a​u​d​i​c​i​n​c​t​u​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.