Viewing data for Triturus carnifex
| Scientific name | Triturus carnifex |
| Common name | Italian crested newt |
| Maximum lifespan | 11.00 years (Triturus carnifex@AnAge) |
| Total mtDNA (size: 16560 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 6866 | 9694 | 4248 | 2618 | 4508 | 5186 |
| Base content per 1 kb (bases) | 415 | 585 | 257 | 158 | 272 | 313 |
| Base content (%) | 41.5% | 58.5% | ||||
| Total protein-coding genes (size: 11339 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 4812 | 6527 | 3094 | 1718 | 3164 | 3363 |
| Base content per 1 kb (bases) | 424 | 576 | 273 | 152 | 279 | 297 |
| Base content (%) | 42.4% | 57.6% | ||||
| D-loop (size: 736 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 264 | 472 | 152 | 112 | 247 | 225 |
| Base content per 1 kb (bases) | 359 | 641 | 207 | 152 | 336 | 306 |
| Base content (%) | 35.9% | 64.1% | ||||
| Total tRNA-coding genes (size: 1531 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 592 | 939 | 338 | 254 | 424 | 515 |
| Base content per 1 kb (bases) | 387 | 613 | 221 | 166 | 277 | 336 |
| Base content (%) | 38.7% | 61.3% | ||||
| Total rRNA-coding genes (size: 2483 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 973 | 1510 | 523 | 450 | 562 | 948 |
| Base content per 1 kb (bases) | 392 | 608 | 211 | 181 | 226 | 382 |
| Base content (%) | 39.2% | 60.8% | ||||
| 12S rRNA gene (size: 924 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 403 | 521 | 222 | 181 | 190 | 331 |
| Base content per 1 kb (bases) | 436 | 564 | 240 | 196 | 206 | 358 |
| Base content (%) | 43.6% | 56.4% | ||||
| 16S rRNA gene (size: 1559 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 570 | 989 | 301 | 269 | 372 | 617 |
| Base content per 1 kb (bases) | 366 | 634 | 193 | 173 | 239 | 396 |
| Base content (%) | 36.6% | 63.4% | ||||
| ATP6 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 301 | 383 | 211 | 90 | 188 | 195 |
| Base content per 1 kb (bases) | 440 | 560 | 308 | 132 | 275 | 285 |
| Base content (%) | 44.0% | 56.0% | ||||
| ATP8 (size: 168 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 58 | 110 | 41 | 17 | 42 | 68 |
| Base content per 1 kb (bases) | 345 | 655 | 244 | 101 | 250 | 405 |
| Base content (%) | 34.5% | 65.5% | ||||
| COX1 (size: 1551 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 703 | 848 | 405 | 298 | 456 | 392 |
| Base content per 1 kb (bases) | 453 | 547 | 261 | 192 | 294 | 253 |
| Base content (%) | 45.3% | 54.7% | ||||
| COX2 (size: 688 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 292 | 396 | 176 | 116 | 176 | 220 |
| Base content per 1 kb (bases) | 424 | 576 | 256 | 169 | 256 | 320 |
| Base content (%) | 42.4% | 57.6% | ||||
| COX3 (size: 784 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 353 | 431 | 215 | 138 | 225 | 206 |
| Base content per 1 kb (bases) | 450 | 550 | 274 | 176 | 287 | 263 |
| Base content (%) | 45.0% | 55.0% | ||||
| CYTB (size: 1141 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 494 | 647 | 327 | 167 | 329 | 318 |
| Base content per 1 kb (bases) | 433 | 567 | 287 | 146 | 288 | 279 |
| Base content (%) | 43.3% | 56.7% | ||||
| ND1 (size: 967 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 382 | 585 | 235 | 147 | 298 | 287 |
| Base content per 1 kb (bases) | 395 | 605 | 243 | 152 | 308 | 297 |
| Base content (%) | 39.5% | 60.5% | ||||
| ND2 (size: 1032 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 415 | 617 | 288 | 127 | 279 | 338 |
| Base content per 1 kb (bases) | 402 | 598 | 279 | 123 | 270 | 328 |
| Base content (%) | 40.2% | 59.8% | ||||
| ND3 (size: 348 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 158 | 190 | 101 | 57 | 103 | 87 |
| Base content per 1 kb (bases) | 454 | 546 | 290 | 164 | 296 | 250 |
| Base content (%) | 45.4% | 54.6% | ||||
| ND4 (size: 1378 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 587 | 791 | 391 | 196 | 386 | 405 |
| Base content per 1 kb (bases) | 426 | 574 | 284 | 142 | 280 | 294 |
| Base content (%) | 42.6% | 57.4% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 123 | 174 | 77 | 46 | 83 | 91 |
| Base content per 1 kb (bases) | 414 | 586 | 259 | 155 | 279 | 306 |
| Base content (%) | 41.4% | 58.6% | ||||
| ND5 (size: 1815 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 723 | 1092 | 465 | 258 | 540 | 552 |
| Base content per 1 kb (bases) | 398 | 602 | 256 | 142 | 298 | 304 |
| Base content (%) | 39.8% | 60.2% | ||||
| ND6 (size: 519 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 234 | 285 | 168 | 66 | 69 | 216 |
| Base content per 1 kb (bases) | 451 | 549 | 324 | 127 | 133 | 416 |
| Base content (%) | 45.1% | 54.9% | ||||
| ATP6 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.41%) 
Alanine (Ala, A)
n = 14 (6.17%) 
Serine (Ser, S)
n = 12 (5.29%) 
Threonine (Thr, T)
n = 24 (10.57%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 17 (7.49%) 
Leucine (Leu, L)
n = 55 (24.23%) 
Isoleucine (Ile, I)
n = 11 (4.85%) 
Methionine (Met, M)
n = 13 (5.73%) 
Proline (Pro, P)
n = 15 (6.61%) 
Phenylalanine (Phe, F)
n = 13 (5.73%) 
Tyrosine (Tyr, Y)
n = 3 (1.32%) 
Tryptophan (Trp, W)
n = 5 (2.2%) 
Aspartic acid (Asp, D)
n = 2 (0.88%) 
Glutamic acid (Glu, E)
n = 4 (1.76%) 
Asparagine (Asn, N)
n = 9 (3.96%) 
Glutamine (Gln, Q)
n = 8 (3.52%) 
Histidine (His, H)
n = 5 (2.2%) 
Lysine (Lys, K)
n = 3 (1.32%) 
Arginine (Arg, R)
n = 4 (1.76%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 6 | 5 | 9 | 8 | 9 | 22 | 5 | 9 | 5 | 3 | 2 | 9 | 6 | 0 | 9 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 0 | 2 | 9 | 3 | 0 | 0 | 6 | 3 | 1 | 3 | 4 | 8 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 15 | 1 | 4 | 1 | 2 | 0 | 0 | 5 | 2 | 1 | 0 | 2 | 1 | 8 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 3 | 1 | 0 | 2 | 1 | 2 | 0 | 1 | 3 | 0 | 0 | 0 | 1 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 47 | 76 | 65 | 40 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 24 | 60 | 35 | 109 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 19 | 75 | 95 | 39 | ||||||||||||
| ATP8 (size: 168 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLNPGPWFSIFLTSWIIYLIVLTAKINNFKYQNEPTPQNTKKEKTQPWDWPWI* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 1 (1.82%)
Alanine (Ala, A)
n = 1 (1.82%)
Serine (Ser, S)
n = 2 (3.64%)
Threonine (Thr, T)
n = 5 (9.09%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.82%)
Leucine (Leu, L)
n = 4 (7.27%)
Isoleucine (Ile, I)
n = 6 (10.91%)
Methionine (Met, M)
n = 1 (1.82%)
Proline (Pro, P)
n = 7 (12.73%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 2 (3.64%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 1 (1.82%)
Glutamic acid (Glu, E)
n = 2 (3.64%)
Asparagine (Asn, N)
n = 5 (9.09%)
Glutamine (Gln, Q)
n = 4 (7.27%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 5 (9.09%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 6 | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 4 | 0 | 0 | 1 | 0 | 0 | 2 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 5 | 1 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 3 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 4 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 1 | 1 | 0 | 1 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 6 | 15 | 22 | 13 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 6 | 15 | 20 | 15 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 5 | 11 | 26 | 14 | ||||||||||||
| COX1 (size: 1551 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 42 (8.14%)
Serine (Ser, S)
n = 35 (6.78%)
Threonine (Thr, T)
n = 36 (6.98%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 41 (7.95%)
Leucine (Leu, L)
n = 61 (11.82%)
Isoleucine (Ile, I)
n = 37 (7.17%)
Methionine (Met, M)
n = 30 (5.81%)
Proline (Pro, P)
n = 28 (5.43%)
Phenylalanine (Phe, F)
n = 40 (7.75%)
Tyrosine (Tyr, Y)
n = 18 (3.49%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 8 (1.55%)
Arginine (Arg, R)
n = 9 (1.74%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 26 | 11 | 18 | 19 | 9 | 15 | 11 | 5 | 4 | 3 | 9 | 8 | 17 | 7 | 25 | 15 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 12 | 0 | 1 | 6 | 21 | 13 | 2 | 4 | 15 | 17 | 11 | 5 | 8 | 13 | 2 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 10 | 17 | 3 | 8 | 6 | 13 | 4 | 2 | 2 | 9 | 9 | 4 | 2 | 4 | 11 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 16 | 8 | 2 | 6 | 9 | 8 | 0 | 0 | 0 | 8 | 1 | 0 | 0 | 0 | 1 | 13 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 155 | 117 | 130 | 115 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 78 | 137 | 93 | 209 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 65 | 151 | 169 | 132 | ||||||||||||
| COX2 (size: 688 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.51%)
Alanine (Ala, A)
n = 17 (7.46%)
Serine (Ser, S)
n = 18 (7.89%)
Threonine (Thr, T)
n = 16 (7.02%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 14 (6.14%)
Leucine (Leu, L)
n = 24 (10.53%)
Isoleucine (Ile, I)
n = 19 (8.33%)
Methionine (Met, M)
n = 17 (7.46%)
Proline (Pro, P)
n = 14 (6.14%)
Phenylalanine (Phe, F)
n = 10 (4.39%)
Tyrosine (Tyr, Y)
n = 8 (3.51%)
Tryptophan (Trp, W)
n = 5 (2.19%)
Aspartic acid (Asp, D)
n = 11 (4.82%)
Glutamic acid (Glu, E)
n = 13 (5.7%)
Asparagine (Asn, N)
n = 6 (2.63%)
Glutamine (Gln, Q)
n = 9 (3.95%)
Histidine (His, H)
n = 8 (3.51%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 6 (2.63%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 14 | 5 | 11 | 6 | 2 | 9 | 1 | 4 | 9 | 0 | 4 | 3 | 7 | 0 | 7 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 0 | 2 | 0 | 6 | 10 | 1 | 0 | 1 | 3 | 4 | 2 | 1 | 8 | 3 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 4 | 8 | 3 | 1 | 7 | 5 | 0 | 0 | 5 | 4 | 4 | 1 | 2 | 1 | 5 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 6 | 8 | 5 | 4 | 7 | 4 | 0 | 1 | 0 | 4 | 1 | 0 | 0 | 0 | 0 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 63 | 55 | 67 | 44 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 26 | 60 | 59 | 84 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 27 | 61 | 94 | 47 | ||||||||||||
| COX3 (size: 784 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 20 (7.69%)
Serine (Ser, S)
n = 18 (6.92%)
Threonine (Thr, T)
n = 21 (8.08%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 16 (6.15%)
Leucine (Leu, L)
n = 32 (12.31%)
Isoleucine (Ile, I)
n = 16 (6.15%)
Methionine (Met, M)
n = 10 (3.85%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 24 (9.23%)
Tyrosine (Tyr, Y)
n = 10 (3.85%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 6 (2.31%)
Glutamic acid (Glu, E)
n = 9 (3.46%)
Asparagine (Asn, N)
n = 3 (1.15%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 14 (5.38%)
Lysine (Lys, K)
n = 2 (0.77%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 6 | 8 | 5 | 6 | 10 | 3 | 6 | 6 | 2 | 4 | 3 | 9 | 0 | 16 | 8 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 2 | 2 | 8 | 9 | 1 | 1 | 6 | 8 | 6 | 3 | 5 | 4 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 8 | 10 | 1 | 7 | 2 | 5 | 0 | 0 | 4 | 4 | 6 | 1 | 2 | 0 | 3 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 12 | 5 | 4 | 0 | 6 | 2 | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 72 | 63 | 56 | 70 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 44 | 67 | 52 | 98 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 22 | 85 | 98 | 56 | ||||||||||||
| CYTB (size: 1141 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 27 (7.12%)
Alanine (Ala, A)
n = 23 (6.07%)
Serine (Ser, S)
n = 27 (7.12%)
Threonine (Thr, T)
n = 25 (6.6%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 17 (4.49%)
Leucine (Leu, L)
n = 59 (15.57%)
Isoleucine (Ile, I)
n = 38 (10.03%)
Methionine (Met, M)
n = 12 (3.17%)
Proline (Pro, P)
n = 21 (5.54%)
Phenylalanine (Phe, F)
n = 29 (7.65%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 8 (2.11%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 17 (4.49%)
Glutamine (Gln, Q)
n = 10 (2.64%)
Histidine (His, H)
n = 12 (3.17%)
Lysine (Lys, K)
n = 11 (2.9%)
Arginine (Arg, R)
n = 8 (2.11%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 13 | 25 | 9 | 10 | 8 | 20 | 7 | 13 | 8 | 2 | 4 | 7 | 5 | 1 | 16 | 13 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 3 | 6 | 7 | 10 | 0 | 3 | 10 | 8 | 6 | 3 | 4 | 12 | 2 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 10 | 1 | 8 | 3 | 13 | 1 | 0 | 2 | 3 | 11 | 5 | 1 | 2 | 15 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 12 | 4 | 2 | 2 | 6 | 9 | 2 | 0 | 2 | 6 | 0 | 0 | 0 | 0 | 0 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 81 | 96 | 105 | 98 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 53 | 94 | 78 | 155 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 33 | 137 | 135 | 75 | ||||||||||||
| ND1 (size: 967 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 17 (5.3%)
Alanine (Ala, A)
n = 26 (8.1%)
Serine (Ser, S)
n = 23 (7.17%)
Threonine (Thr, T)
n = 20 (6.23%)
Cysteine (Cys, C)
n = 1 (0.31%)
Valine (Val, V)
n = 22 (6.85%)
Leucine (Leu, L)
n = 61 (19.0%)
Isoleucine (Ile, I)
n = 22 (6.85%)
Methionine (Met, M)
n = 20 (6.23%)
Proline (Pro, P)
n = 22 (6.85%)
Phenylalanine (Phe, F)
n = 19 (5.92%)
Tyrosine (Tyr, Y)
n = 10 (3.12%)
Tryptophan (Trp, W)
n = 7 (2.18%)
Aspartic acid (Asp, D)
n = 3 (0.93%)
Glutamic acid (Glu, E)
n = 11 (3.43%)
Asparagine (Asn, N)
n = 13 (4.05%)
Glutamine (Gln, Q)
n = 7 (2.18%)
Histidine (His, H)
n = 3 (0.93%)
Lysine (Lys, K)
n = 7 (2.18%)
Arginine (Arg, R)
n = 8 (2.49%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 17 | 5 | 16 | 15 | 3 | 20 | 7 | 14 | 5 | 2 | 9 | 3 | 10 | 0 | 14 | 5 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 1 | 0 | 8 | 17 | 1 | 1 | 7 | 5 | 4 | 3 | 3 | 15 | 1 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 5 | 7 | 6 | 4 | 4 | 12 | 1 | 0 | 2 | 7 | 3 | 1 | 2 | 5 | 8 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 9 | 2 | 1 | 2 | 5 | 2 | 0 | 0 | 8 | 0 | 0 | 0 | 0 | 0 | 6 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 79 | 85 | 84 | 74 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 35 | 89 | 54 | 144 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 33 | 61 | 149 | 79 | ||||||||||||
| ND2 (size: 1032 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.37%)
Alanine (Ala, A)
n = 35 (10.2%)
Serine (Ser, S)
n = 32 (9.33%)
Threonine (Thr, T)
n = 31 (9.04%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 4 (1.17%)
Leucine (Leu, L)
n = 67 (19.53%)
Isoleucine (Ile, I)
n = 25 (7.29%)
Methionine (Met, M)
n = 36 (10.5%)
Proline (Pro, P)
n = 17 (4.96%)
Phenylalanine (Phe, F)
n = 9 (2.62%)
Tyrosine (Tyr, Y)
n = 7 (2.04%)
Tryptophan (Trp, W)
n = 11 (3.21%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.17%)
Asparagine (Asn, N)
n = 18 (5.25%)
Glutamine (Gln, Q)
n = 7 (2.04%)
Histidine (His, H)
n = 8 (2.33%)
Lysine (Lys, K)
n = 10 (2.92%)
Arginine (Arg, R)
n = 4 (1.17%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 14 | 11 | 32 | 10 | 10 | 25 | 7 | 13 | 6 | 1 | 1 | 1 | 1 | 1 | 7 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 1 | 7 | 19 | 8 | 1 | 0 | 3 | 7 | 5 | 3 | 3 | 11 | 0 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 14 | 3 | 7 | 5 | 13 | 1 | 1 | 5 | 4 | 3 | 3 | 2 | 7 | 11 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 4 | 0 | 0 | 2 | 9 | 1 | 0 | 0 | 3 | 1 | 0 | 0 | 1 | 0 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 60 | 88 | 126 | 70 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 37 | 109 | 57 | 141 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 30 | 91 | 155 | 68 | ||||||||||||
| ND3 (size: 1032 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 15 (4.37%)
Alanine (Ala, A)
n = 35 (10.2%)
Serine (Ser, S)
n = 32 (9.33%)
Threonine (Thr, T)
n = 31 (9.04%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 4 (1.17%)
Leucine (Leu, L)
n = 67 (19.53%)
Isoleucine (Ile, I)
n = 25 (7.29%)
Methionine (Met, M)
n = 36 (10.5%)
Proline (Pro, P)
n = 17 (4.96%)
Phenylalanine (Phe, F)
n = 9 (2.62%)
Tyrosine (Tyr, Y)
n = 7 (2.04%)
Tryptophan (Trp, W)
n = 11 (3.21%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.17%)
Asparagine (Asn, N)
n = 18 (5.25%)
Glutamine (Gln, Q)
n = 7 (2.04%)
Histidine (His, H)
n = 8 (2.33%)
Lysine (Lys, K)
n = 10 (2.92%)
Arginine (Arg, R)
n = 4 (1.17%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 14 | 11 | 32 | 10 | 10 | 25 | 7 | 13 | 6 | 1 | 1 | 1 | 1 | 1 | 7 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 1 | 7 | 19 | 8 | 1 | 0 | 3 | 7 | 5 | 3 | 3 | 11 | 0 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 14 | 3 | 7 | 5 | 13 | 1 | 1 | 5 | 4 | 3 | 3 | 2 | 7 | 11 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 4 | 0 | 0 | 2 | 9 | 1 | 0 | 0 | 3 | 1 | 0 | 0 | 1 | 0 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 60 | 88 | 126 | 70 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 37 | 109 | 57 | 141 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 30 | 91 | 155 | 68 | ||||||||||||
| ND4 (size: 1378 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 20 (4.37%)
Alanine (Ala, A)
n = 37 (8.08%)
Serine (Ser, S)
n = 39 (8.52%)
Threonine (Thr, T)
n = 43 (9.39%)
Cysteine (Cys, C)
n = 5 (1.09%)
Valine (Val, V)
n = 15 (3.28%)
Leucine (Leu, L)
n = 92 (20.09%)
Isoleucine (Ile, I)
n = 39 (8.52%)
Methionine (Met, M)
n = 29 (6.33%)
Proline (Pro, P)
n = 25 (5.46%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 11 (2.4%)
Tryptophan (Trp, W)
n = 15 (3.28%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 14 (3.06%)
Glutamine (Gln, Q)
n = 12 (2.62%)
Histidine (His, H)
n = 12 (2.62%)
Lysine (Lys, K)
n = 11 (2.4%)
Arginine (Arg, R)
n = 11 (2.4%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 25 | 14 | 23 | 14 | 14 | 35 | 8 | 17 | 9 | 3 | 3 | 6 | 5 | 1 | 9 | 7 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 1 | 4 | 6 | 15 | 15 | 1 | 0 | 9 | 3 | 8 | 5 | 7 | 11 | 2 | 10 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 10 | 16 | 7 | 8 | 5 | 13 | 2 | 1 | 10 | 6 | 5 | 3 | 4 | 7 | 7 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 8 | 1 | 1 | 3 | 10 | 1 | 0 | 1 | 8 | 2 | 0 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 85 | 131 | 147 | 96 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 62 | 133 | 73 | 191 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 49 | 127 | 185 | 98 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 6 (6.12%)
Alanine (Ala, A)
n = 12 (12.24%)
Serine (Ser, S)
n = 8 (8.16%)
Threonine (Thr, T)
n = 11 (11.22%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 3 (3.06%)
Leucine (Leu, L)
n = 19 (19.39%)
Isoleucine (Ile, I)
n = 1 (1.02%)
Methionine (Met, M)
n = 11 (11.22%)
Proline (Pro, P)
n = 1 (1.02%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 3 (3.06%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 5 (5.1%)
Lysine (Lys, K)
n = 1 (1.02%)
Arginine (Arg, R)
n = 2 (2.04%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 0 | 1 | 8 | 6 | 2 | 3 | 2 | 6 | 2 | 0 | 0 | 0 | 2 | 1 | 4 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 3 | 4 | 1 | 7 | 0 | 1 | 0 | 4 | 1 | 0 | 1 | 0 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 3 | 5 | 0 | 0 | 2 | 4 | 1 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 2 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 1 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 24 | 23 | 28 | 24 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 13 | 31 | 16 | 39 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 9 | 23 | 47 | 20 | ||||||||||||
| ND5 (size: 1815 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 28 (4.64%)
Alanine (Ala, A)
n = 40 (6.62%)
Serine (Ser, S)
n = 57 (9.44%)
Threonine (Thr, T)
n = 53 (8.77%)
Cysteine (Cys, C)
n = 9 (1.49%)
Valine (Val, V)
n = 25 (4.14%)
Leucine (Leu, L)
n = 87 (14.4%)
Isoleucine (Ile, I)
n = 53 (8.77%)
Methionine (Met, M)
n = 40 (6.62%)
Proline (Pro, P)
n = 27 (4.47%)
Phenylalanine (Phe, F)
n = 45 (7.45%)
Tyrosine (Tyr, Y)
n = 10 (1.66%)
Tryptophan (Trp, W)
n = 12 (1.99%)
Aspartic acid (Asp, D)
n = 12 (1.99%)
Glutamic acid (Glu, E)
n = 11 (1.82%)
Asparagine (Asn, N)
n = 29 (4.8%)
Glutamine (Gln, Q)
n = 18 (2.98%)
Histidine (His, H)
n = 13 (2.15%)
Lysine (Lys, K)
n = 25 (4.14%)
Arginine (Arg, R)
n = 10 (1.66%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 33 | 20 | 29 | 9 | 18 | 23 | 14 | 19 | 15 | 3 | 5 | 4 | 14 | 2 | 28 | 17 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 11 | 5 | 4 | 5 | 21 | 12 | 2 | 2 | 9 | 11 | 6 | 7 | 4 | 9 | 7 | 11 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 15 | 21 | 6 | 13 | 6 | 24 | 2 | 1 | 11 | 5 | 5 | 4 | 4 | 11 | 18 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 9 | 8 | 3 | 6 | 6 | 20 | 5 | 0 | 1 | 8 | 1 | 0 | 0 | 0 | 1 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 116 | 132 | 212 | 145 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 71 | 165 | 119 | 250 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 71 | 168 | 221 | 145 | ||||||||||||
| ND6 (size: 519 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 23 (13.37%)
Alanine (Ala, A)
n = 15 (8.72%)
Serine (Ser, S)
n = 15 (8.72%)
Threonine (Thr, T)
n = 2 (1.16%)
Cysteine (Cys, C)
n = 5 (2.91%)
Valine (Val, V)
n = 24 (13.95%)
Leucine (Leu, L)
n = 29 (16.86%)
Isoleucine (Ile, I)
n = 7 (4.07%)
Methionine (Met, M)
n = 6 (3.49%)
Proline (Pro, P)
n = 6 (3.49%)
Phenylalanine (Phe, F)
n = 12 (6.98%)
Tyrosine (Tyr, Y)
n = 10 (5.81%)
Tryptophan (Trp, W)
n = 5 (2.91%)
Aspartic acid (Asp, D)
n = 3 (1.74%)
Glutamic acid (Glu, E)
n = 5 (2.91%)
Asparagine (Asn, N)
n = 2 (1.16%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 3 (1.74%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 6 | 1 | 3 | 4 | 1 | 2 | 3 | 9 | 0 | 0 | 9 | 0 | 6 | 9 | 11 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 4 | 1 | 7 | 2 | 2 | 4 | 6 | 0 | 1 | 16 | 4 | 1 | 0 | 1 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 0 | 1 | 9 | 1 | 1 | 1 | 2 | 1 | 9 | 1 | 2 | 10 | 1 | 1 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 0 | 0 | 5 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 3 | 1 | 0 | 0 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 70 | 19 | 21 | 63 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 40 | 35 | 20 | 78 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 58 | 12 | 28 | 75 | ||||||||||||
| Total protein-coding genes (size: 11372 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 229 (6.05%)
Alanine (Ala, A)
n = 287 (7.58%)
Serine (Ser, S)
n = 294 (7.76%)
Threonine (Thr, T)
n = 299 (7.89%)
Cysteine (Cys, C)
n = 33 (0.87%)
Valine (Val, V)
n = 203 (5.36%)
Leucine (Leu, L)
n = 617 (16.29%)
Isoleucine (Ile, I)
n = 282 (7.44%)
Methionine (Met, M)
n = 228 (6.02%)
Proline (Pro, P)
n = 203 (5.36%)
Phenylalanine (Phe, F)
n = 233 (6.15%)
Tyrosine (Tyr, Y)
n = 106 (2.8%)
Tryptophan (Trp, W)
n = 113 (2.98%)
Aspartic acid (Asp, D)
n = 71 (1.87%)
Glutamic acid (Glu, E)
n = 92 (2.43%)
Asparagine (Asn, N)
n = 137 (3.62%)
Glutamine (Gln, Q)
n = 95 (2.51%)
Histidine (His, H)
n = 99 (2.61%)
Lysine (Lys, K)
n = 88 (2.32%)
Arginine (Arg, R)
n = 72 (1.9%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 174 | 108 | 167 | 114 | 89 | 193 | 72 | 117 | 76 | 19 | 52 | 45 | 82 | 24 | 152 | 81 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 61 | 10 | 23 | 47 | 120 | 107 | 13 | 18 | 71 | 71 | 69 | 42 | 41 | 99 | 21 | 51 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 82 | 131 | 35 | 70 | 43 | 111 | 14 | 8 | 48 | 55 | 51 | 26 | 32 | 42 | 95 | 16 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 83 | 64 | 28 | 22 | 49 | 75 | 13 | 1 | 5 | 57 | 9 | 1 | 0 | 4 | 3 | 87 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 882 | 937 | 1091 | 879 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 504 | 1027 | 695 | 1563 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 439 | 1034 | 1442 | 874 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​T​r​i​t​u​r​u​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ c​a​r​n​i​f​e​x​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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