Viewing data for Trichiurus lepturus
| Scientific name | Trichiurus lepturus |
| Common name | Atlantic cutlassfish |
| Maximum lifespan | 15.00 years (Trichiurus lepturus@AnAge) |
| Total mtDNA (size: 17060 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 7771 | 9289 | 5007 | 2764 | 4431 | 4858 |
| Base content per 1 kb (bases) | 456 | 544 | 293 | 162 | 260 | 285 |
| Base content (%) | 45.6% | 54.4% | ||||
| Total protein-coding genes (size: 11439 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 5362 | 6077 | 3622 | 1740 | 3019 | 3058 |
| Base content per 1 kb (bases) | 469 | 531 | 317 | 152 | 264 | 267 |
| Base content (%) | 46.9% | 53.1% | ||||
| D-loop (size: 1384 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 429 | 955 | 238 | 191 | 483 | 472 |
| Base content per 1 kb (bases) | 310 | 690 | 172 | 138 | 349 | 341 |
| Base content (%) | 31.0% | 69.0% | ||||
| Total tRNA-coding genes (size: 1483 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 675 | 808 | 376 | 299 | 360 | 448 |
| Base content per 1 kb (bases) | 455 | 545 | 254 | 202 | 243 | 302 |
| Base content (%) | 45.5% | 54.5% | ||||
| Total rRNA-coding genes (size: 2682 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1276 | 1406 | 753 | 523 | 548 | 858 |
| Base content per 1 kb (bases) | 476 | 524 | 281 | 195 | 204 | 320 |
| Base content (%) | 47.6% | 52.4% | ||||
| 12S rRNA gene (size: 957 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 452 | 505 | 254 | 198 | 208 | 297 |
| Base content per 1 kb (bases) | 472 | 528 | 265 | 207 | 217 | 310 |
| Base content (%) | 47.2% | 52.8% | ||||
| 16S rRNA gene (size: 1725 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 824 | 901 | 499 | 325 | 340 | 561 |
| Base content per 1 kb (bases) | 478 | 522 | 289 | 188 | 197 | 325 |
| Base content (%) | 47.8% | 52.2% | ||||
| ATP6 (size: 684 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 314 | 370 | 215 | 99 | 189 | 181 |
| Base content per 1 kb (bases) | 459 | 541 | 314 | 145 | 276 | 265 |
| Base content (%) | 45.9% | 54.1% | ||||
| ATP8 (size: 168 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 70 | 98 | 50 | 20 | 49 | 49 |
| Base content per 1 kb (bases) | 417 | 583 | 298 | 119 | 292 | 292 |
| Base content (%) | 41.7% | 58.3% | ||||
| COX1 (size: 1551 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 739 | 812 | 453 | 286 | 429 | 383 |
| Base content per 1 kb (bases) | 476 | 524 | 292 | 184 | 277 | 247 |
| Base content (%) | 47.6% | 52.4% | ||||
| COX2 (size: 691 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 313 | 378 | 204 | 109 | 175 | 203 |
| Base content per 1 kb (bases) | 453 | 547 | 295 | 158 | 253 | 294 |
| Base content (%) | 45.3% | 54.7% | ||||
| COX3 (size: 785 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 388 | 397 | 252 | 136 | 209 | 188 |
| Base content per 1 kb (bases) | 494 | 506 | 321 | 173 | 266 | 239 |
| Base content (%) | 49.4% | 50.6% | ||||
| CYTB (size: 1141 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 527 | 614 | 358 | 169 | 332 | 282 |
| Base content per 1 kb (bases) | 462 | 538 | 314 | 148 | 291 | 247 |
| Base content (%) | 46.2% | 53.8% | ||||
| ND1 (size: 975 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 455 | 520 | 312 | 143 | 264 | 256 |
| Base content per 1 kb (bases) | 467 | 533 | 320 | 147 | 271 | 263 |
| Base content (%) | 46.7% | 53.3% | ||||
| ND2 (size: 1046 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 501 | 545 | 369 | 132 | 251 | 294 |
| Base content per 1 kb (bases) | 479 | 521 | 353 | 126 | 240 | 281 |
| Base content (%) | 47.9% | 52.1% | ||||
| ND3 (size: 349 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 167 | 182 | 113 | 54 | 109 | 73 |
| Base content per 1 kb (bases) | 479 | 521 | 324 | 155 | 312 | 209 |
| Base content (%) | 47.9% | 52.1% | ||||
| ND4 (size: 1371 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 623 | 748 | 411 | 212 | 363 | 385 |
| Base content per 1 kb (bases) | 454 | 546 | 300 | 155 | 265 | 281 |
| Base content (%) | 45.4% | 54.6% | ||||
| ND4L (size: 297 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 149 | 148 | 102 | 47 | 82 | 66 |
| Base content per 1 kb (bases) | 502 | 498 | 343 | 158 | 276 | 222 |
| Base content (%) | 50.2% | 49.8% | ||||
| ND5 (size: 1881 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 875 | 1006 | 621 | 254 | 490 | 516 |
| Base content per 1 kb (bases) | 465 | 535 | 330 | 135 | 260 | 274 |
| Base content (%) | 46.5% | 53.5% | ||||
| ND6 (size: 522 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 247 | 275 | 165 | 82 | 82 | 193 |
| Base content per 1 kb (bases) | 473 | 527 | 316 | 157 | 157 | 370 |
| Base content (%) | 47.3% | 52.7% | ||||
| ATP6 (size: 684 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.41%) 
Alanine (Ala, A)
n = 17 (7.49%) 
Serine (Ser, S)
n = 15 (6.61%) 
Threonine (Thr, T)
n = 21 (9.25%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 14 (6.17%) 
Leucine (Leu, L)
n = 43 (18.94%) 
Isoleucine (Ile, I)
n = 23 (10.13%) 
Methionine (Met, M)
n = 9 (3.96%) 
Proline (Pro, P)
n = 15 (6.61%) 
Phenylalanine (Phe, F)
n = 14 (6.17%) 
Tyrosine (Tyr, Y)
n = 3 (1.32%) 
Tryptophan (Trp, W)
n = 5 (2.2%) 
Aspartic acid (Asp, D)
n = 2 (0.88%) 
Glutamic acid (Glu, E)
n = 7 (3.08%) 
Asparagine (Asn, N)
n = 7 (3.08%) 
Glutamine (Gln, Q)
n = 6 (2.64%) 
Histidine (His, H)
n = 8 (3.52%) 
Lysine (Lys, K)
n = 1 (0.44%) 
Arginine (Arg, R)
n = 7 (3.08%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 16 | 7 | 7 | 5 | 16 | 12 | 1 | 7 | 2 | 4 | 2 | 2 | 7 | 3 | 8 | 6 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 0 | 1 | 10 | 6 | 0 | 0 | 3 | 6 | 1 | 1 | 7 | 5 | 2 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 8 | 1 | 2 | 1 | 4 | 3 | 1 | 4 | 0 | 3 | 1 | 2 | 1 | 6 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 6 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 4 | 1 | 0 | 0 | 1 | 0 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 50 | 70 | 66 | 42 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 27 | 63 | 35 | 103 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 22 | 82 | 80 | 44 | ||||||||||||
| ATP8 (size: 168 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: MPQLKPSPWLHIFLLAWASFLVILPCKVISFIYPSSPETQEEKTTLDTPWTWQWQ* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 2 (3.64%)
Serine (Ser, S)
n = 5 (9.09%)
Threonine (Thr, T)
n = 5 (9.09%)
Cysteine (Cys, C)
n = 1 (1.82%)
Valine (Val, V)
n = 2 (3.64%)
Leucine (Leu, L)
n = 7 (12.73%)
Isoleucine (Ile, I)
n = 4 (7.27%)
Methionine (Met, M)
n = 1 (1.82%)
Proline (Pro, P)
n = 7 (12.73%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 1 (1.82%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 1 (1.82%)
Glutamic acid (Glu, E)
n = 3 (5.45%)
Asparagine (Asn, N)
n = 0 (0%)
Glutamine (Gln, Q)
n = 4 (7.27%)
Histidine (His, H)
n = 1 (1.82%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 3 | 1 | 0 | 2 | 1 | 0 | 0 | 3 | 3 | 1 | 1 | 1 | 0 | 0 | 1 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 3 | 3 | 1 | 0 | 0 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 3 | 2 | 0 | 1 | 2 | 0 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 3 | 0 | 1 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 8 | 15 | 14 | 19 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 7 | 18 | 14 | 17 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 5 | 17 | 21 | 13 | ||||||||||||
| COX1 (size: 1551 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 51 (9.88%)
Serine (Ser, S)
n = 26 (5.04%)
Threonine (Thr, T)
n = 37 (7.17%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 39 (7.56%)
Leucine (Leu, L)
n = 64 (12.4%)
Isoleucine (Ile, I)
n = 38 (7.36%)
Methionine (Met, M)
n = 26 (5.04%)
Proline (Pro, P)
n = 27 (5.23%)
Phenylalanine (Phe, F)
n = 43 (8.33%)
Tyrosine (Tyr, Y)
n = 17 (3.29%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 14 (2.71%)
Glutamic acid (Glu, E)
n = 11 (2.13%)
Asparagine (Asn, N)
n = 14 (2.71%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 20 (3.88%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 8 (1.55%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 24 | 14 | 12 | 15 | 12 | 23 | 6 | 8 | 4 | 3 | 12 | 11 | 10 | 6 | 20 | 23 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 14 | 0 | 1 | 6 | 31 | 10 | 4 | 4 | 18 | 17 | 8 | 3 | 14 | 9 | 1 | 6 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 9 | 20 | 2 | 3 | 10 | 8 | 1 | 0 | 4 | 2 | 15 | 1 | 0 | 6 | 8 | 3 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 17 | 11 | 0 | 4 | 10 | 8 | 1 | 2 | 1 | 5 | 0 | 0 | 0 | 1 | 0 | 16 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 162 | 118 | 128 | 109 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 77 | 137 | 93 | 210 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 47 | 198 | 162 | 110 | ||||||||||||
| COX2 (size: 691 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.93%)
Alanine (Ala, A)
n = 17 (7.42%)
Serine (Ser, S)
n = 15 (6.55%)
Threonine (Thr, T)
n = 18 (7.86%)
Cysteine (Cys, C)
n = 3 (1.31%)
Valine (Val, V)
n = 15 (6.55%)
Leucine (Leu, L)
n = 25 (10.92%)
Isoleucine (Ile, I)
n = 21 (9.17%)
Methionine (Met, M)
n = 11 (4.8%)
Proline (Pro, P)
n = 12 (5.24%)
Phenylalanine (Phe, F)
n = 9 (3.93%)
Tyrosine (Tyr, Y)
n = 9 (3.93%)
Tryptophan (Trp, W)
n = 5 (2.18%)
Aspartic acid (Asp, D)
n = 13 (5.68%)
Glutamic acid (Glu, E)
n = 14 (6.11%)
Asparagine (Asn, N)
n = 7 (3.06%)
Glutamine (Gln, Q)
n = 7 (3.06%)
Histidine (His, H)
n = 9 (3.93%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 7 (3.06%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 9 | 12 | 6 | 7 | 7 | 8 | 2 | 1 | 6 | 1 | 4 | 8 | 3 | 0 | 6 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 0 | 3 | 7 | 4 | 6 | 0 | 1 | 2 | 5 | 1 | 2 | 5 | 5 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 7 | 2 | 3 | 5 | 4 | 1 | 1 | 1 | 3 | 6 | 1 | 0 | 3 | 4 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 7 | 13 | 1 | 2 | 11 | 4 | 0 | 0 | 1 | 5 | 1 | 0 | 0 | 0 | 0 | 4 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 68 | 59 | 63 | 40 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 26 | 60 | 63 | 81 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 15 | 85 | 77 | 53 | ||||||||||||
| COX3 (size: 785 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 22 (8.46%)
Alanine (Ala, A)
n = 23 (8.85%)
Serine (Ser, S)
n = 13 (5.0%)
Threonine (Thr, T)
n = 25 (9.62%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 18 (6.92%)
Leucine (Leu, L)
n = 34 (13.08%)
Isoleucine (Ile, I)
n = 12 (4.62%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 3 (1.15%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 15 (5.77%)
Lysine (Lys, K)
n = 1 (0.38%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 8 | 4 | 5 | 8 | 11 | 9 | 2 | 4 | 6 | 2 | 3 | 7 | 7 | 1 | 9 | 14 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 2 | 6 | 7 | 10 | 0 | 2 | 12 | 6 | 2 | 2 | 8 | 2 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 8 | 13 | 2 | 3 | 6 | 1 | 0 | 0 | 3 | 4 | 8 | 2 | 0 | 0 | 3 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 14 | 7 | 1 | 0 | 5 | 0 | 1 | 2 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 76 | 70 | 52 | 63 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 44 | 70 | 52 | 95 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 16 | 112 | 83 | 50 | ||||||||||||
| CYTB (size: 1141 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 25 (6.6%)
Alanine (Ala, A)
n = 28 (7.39%)
Serine (Ser, S)
n = 23 (6.07%)
Threonine (Thr, T)
n = 24 (6.33%)
Cysteine (Cys, C)
n = 4 (1.06%)
Valine (Val, V)
n = 21 (5.54%)
Leucine (Leu, L)
n = 58 (15.3%)
Isoleucine (Ile, I)
n = 29 (7.65%)
Methionine (Met, M)
n = 11 (2.9%)
Proline (Pro, P)
n = 23 (6.07%)
Phenylalanine (Phe, F)
n = 37 (9.76%)
Tyrosine (Tyr, Y)
n = 13 (3.43%)
Tryptophan (Trp, W)
n = 13 (3.43%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 7 (1.85%)
Asparagine (Asn, N)
n = 21 (5.54%)
Glutamine (Gln, Q)
n = 5 (1.32%)
Histidine (His, H)
n = 11 (2.9%)
Lysine (Lys, K)
n = 8 (2.11%)
Arginine (Arg, R)
n = 8 (2.11%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 14 | 15 | 8 | 13 | 15 | 20 | 5 | 5 | 2 | 3 | 4 | 4 | 12 | 1 | 12 | 25 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 1 | 3 | 3 | 17 | 7 | 1 | 3 | 7 | 10 | 5 | 7 | 10 | 6 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 11 | 9 | 2 | 8 | 8 | 4 | 2 | 0 | 1 | 5 | 8 | 3 | 0 | 6 | 15 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 9 | 7 | 0 | 1 | 10 | 7 | 1 | 0 | 3 | 5 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 92 | 100 | 94 | 94 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 51 | 97 | 76 | 156 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 26 | 161 | 112 | 81 | ||||||||||||
| ND1 (size: 975 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 17 (5.25%)
Alanine (Ala, A)
n = 35 (10.8%)
Serine (Ser, S)
n = 22 (6.79%)
Threonine (Thr, T)
n = 19 (5.86%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 15 (4.63%)
Leucine (Leu, L)
n = 64 (19.75%)
Isoleucine (Ile, I)
n = 27 (8.33%)
Methionine (Met, M)
n = 11 (3.4%)
Proline (Pro, P)
n = 23 (7.1%)
Phenylalanine (Phe, F)
n = 19 (5.86%)
Tyrosine (Tyr, Y)
n = 12 (3.7%)
Tryptophan (Trp, W)
n = 8 (2.47%)
Aspartic acid (Asp, D)
n = 3 (0.93%)
Glutamic acid (Glu, E)
n = 12 (3.7%)
Asparagine (Asn, N)
n = 13 (4.01%)
Glutamine (Gln, Q)
n = 7 (2.16%)
Histidine (His, H)
n = 2 (0.62%)
Lysine (Lys, K)
n = 7 (2.16%)
Arginine (Arg, R)
n = 8 (2.47%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 10 | 17 | 9 | 14 | 13 | 18 | 3 | 15 | 4 | 3 | 4 | 5 | 5 | 1 | 5 | 14 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 0 | 0 | 5 | 19 | 11 | 0 | 2 | 5 | 9 | 1 | 2 | 13 | 7 | 1 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 10 | 5 | 1 | 2 | 5 | 10 | 1 | 0 | 4 | 2 | 10 | 3 | 1 | 5 | 8 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 8 | 4 | 0 | 3 | 4 | 3 | 0 | 1 | 7 | 0 | 0 | 0 | 1 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 82 | 88 | 81 | 74 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 37 | 95 | 57 | 136 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 24 | 129 | 118 | 54 | ||||||||||||
| ND2 (size: 1046 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.61%)
Alanine (Ala, A)
n = 37 (10.66%)
Serine (Ser, S)
n = 20 (5.76%)
Threonine (Thr, T)
n = 48 (13.83%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 6 (1.73%)
Leucine (Leu, L)
n = 75 (21.61%)
Isoleucine (Ile, I)
n = 24 (6.92%)
Methionine (Met, M)
n = 14 (4.03%)
Proline (Pro, P)
n = 22 (6.34%)
Phenylalanine (Phe, F)
n = 14 (4.03%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 4 (1.15%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 10 (2.88%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 13 | 11 | 9 | 15 | 20 | 27 | 8 | 3 | 11 | 3 | 2 | 3 | 1 | 0 | 6 | 8 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 0 | 1 | 6 | 16 | 15 | 0 | 1 | 6 | 7 | 2 | 3 | 11 | 5 | 3 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 20 | 20 | 1 | 4 | 6 | 4 | 1 | 2 | 3 | 1 | 6 | 1 | 2 | 2 | 8 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 6 | 4 | 1 | 1 | 3 | 9 | 0 | 0 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 68 | 117 | 110 | 53 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 37 | 122 | 56 | 133 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 27 | 130 | 127 | 64 | ||||||||||||
| ND3 (size: 1046 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.61%)
Alanine (Ala, A)
n = 37 (10.66%)
Serine (Ser, S)
n = 20 (5.76%)
Threonine (Thr, T)
n = 48 (13.83%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 6 (1.73%)
Leucine (Leu, L)
n = 75 (21.61%)
Isoleucine (Ile, I)
n = 24 (6.92%)
Methionine (Met, M)
n = 14 (4.03%)
Proline (Pro, P)
n = 22 (6.34%)
Phenylalanine (Phe, F)
n = 14 (4.03%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 11 (3.17%)
Aspartic acid (Asp, D)
n = 4 (1.15%)
Glutamic acid (Glu, E)
n = 5 (1.44%)
Asparagine (Asn, N)
n = 10 (2.88%)
Glutamine (Gln, Q)
n = 14 (4.03%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 9 (2.59%)
Arginine (Arg, R)
n = 4 (1.15%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 13 | 11 | 9 | 15 | 20 | 27 | 8 | 3 | 11 | 3 | 2 | 3 | 1 | 0 | 6 | 8 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 5 | 0 | 1 | 6 | 16 | 15 | 0 | 1 | 6 | 7 | 2 | 3 | 11 | 5 | 3 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 20 | 20 | 1 | 4 | 6 | 4 | 1 | 2 | 3 | 1 | 6 | 1 | 2 | 2 | 8 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 6 | 4 | 1 | 1 | 3 | 9 | 0 | 0 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 68 | 117 | 110 | 53 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 37 | 122 | 56 | 133 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 27 | 130 | 127 | 64 | ||||||||||||
| ND4 (size: 1371 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 22 (4.82%)
Alanine (Ala, A)
n = 50 (10.96%)
Serine (Ser, S)
n = 30 (6.58%)
Threonine (Thr, T)
n = 42 (9.21%)
Cysteine (Cys, C)
n = 4 (0.88%)
Valine (Val, V)
n = 16 (3.51%)
Leucine (Leu, L)
n = 86 (18.86%)
Isoleucine (Ile, I)
n = 34 (7.46%)
Methionine (Met, M)
n = 27 (5.92%)
Proline (Pro, P)
n = 27 (5.92%)
Phenylalanine (Phe, F)
n = 19 (4.17%)
Tyrosine (Tyr, Y)
n = 13 (2.85%)
Tryptophan (Trp, W)
n = 15 (3.29%)
Aspartic acid (Asp, D)
n = 5 (1.1%)
Glutamic acid (Glu, E)
n = 12 (2.63%)
Asparagine (Asn, N)
n = 13 (2.85%)
Glutamine (Gln, Q)
n = 9 (1.97%)
Histidine (His, H)
n = 10 (2.19%)
Lysine (Lys, K)
n = 11 (2.41%)
Arginine (Arg, R)
n = 11 (2.41%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 21 | 13 | 18 | 17 | 12 | 26 | 13 | 15 | 9 | 0 | 9 | 2 | 4 | 1 | 10 | 9 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 9 | 1 | 3 | 12 | 23 | 15 | 0 | 1 | 6 | 10 | 5 | 2 | 13 | 11 | 1 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 14 | 22 | 1 | 2 | 9 | 7 | 2 | 2 | 8 | 6 | 7 | 3 | 3 | 2 | 11 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 7 | 5 | 0 | 5 | 10 | 1 | 0 | 4 | 7 | 0 | 1 | 0 | 0 | 0 | 12 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 105 | 125 | 138 | 89 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 63 | 139 | 73 | 182 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 44 | 147 | 174 | 92 | ||||||||||||
| ND4L (size: 297 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 5 (5.1%)
Alanine (Ala, A)
n = 12 (12.24%)
Serine (Ser, S)
n = 13 (13.27%)
Threonine (Thr, T)
n = 9 (9.18%)
Cysteine (Cys, C)
n = 4 (4.08%)
Valine (Val, V)
n = 1 (1.02%)
Leucine (Leu, L)
n = 24 (24.49%)
Isoleucine (Ile, I)
n = 3 (3.06%)
Methionine (Met, M)
n = 4 (4.08%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 5 (5.1%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 1 (1.02%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 4 (4.08%)
Lysine (Lys, K)
n = 1 (1.02%)
Arginine (Arg, R)
n = 3 (3.06%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 1 | 2 | 2 | 7 | 5 | 5 | 1 | 4 | 2 | 0 | 0 | 0 | 1 | 0 | 2 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 1 | 3 | 1 | 6 | 4 | 1 | 1 | 2 | 1 | 1 | 0 | 2 | 0 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 4 | 2 | 1 | 1 | 3 | 5 | 0 | 0 | 4 | 0 | 1 | 0 | 2 | 1 | 0 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 4 | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 21 | 29 | 22 | 27 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 17 | 32 | 13 | 37 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 9 | 41 | 31 | 18 | ||||||||||||
| ND5 (size: 1881 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 31 (4.95%)
Alanine (Ala, A)
n = 54 (8.63%)
Serine (Ser, S)
n = 44 (7.03%)
Threonine (Thr, T)
n = 62 (9.9%)
Cysteine (Cys, C)
n = 11 (1.76%)
Valine (Val, V)
n = 22 (3.51%)
Leucine (Leu, L)
n = 101 (16.13%)
Isoleucine (Ile, I)
n = 54 (8.63%)
Methionine (Met, M)
n = 24 (3.83%)
Proline (Pro, P)
n = 32 (5.11%)
Phenylalanine (Phe, F)
n = 50 (7.99%)
Tyrosine (Tyr, Y)
n = 11 (1.76%)
Tryptophan (Trp, W)
n = 11 (1.76%)
Aspartic acid (Asp, D)
n = 12 (1.92%)
Glutamic acid (Glu, E)
n = 11 (1.76%)
Asparagine (Asn, N)
n = 25 (3.99%)
Glutamine (Gln, Q)
n = 18 (2.88%)
Histidine (His, H)
n = 20 (3.19%)
Lysine (Lys, K)
n = 21 (3.35%)
Arginine (Arg, R)
n = 12 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 26 | 28 | 20 | 18 | 36 | 25 | 11 | 11 | 13 | 5 | 5 | 6 | 5 | 6 | 14 | 36 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 2 | 9 | 9 | 28 | 16 | 1 | 2 | 9 | 12 | 8 | 5 | 13 | 13 | 1 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 29 | 26 | 3 | 3 | 17 | 10 | 2 | 2 | 10 | 2 | 9 | 1 | 0 | 6 | 19 | 9 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 11 | 11 | 0 | 4 | 8 | 17 | 4 | 1 | 1 | 9 | 1 | 0 | 0 | 1 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 130 | 172 | 198 | 127 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 77 | 180 | 119 | 251 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 47 | 269 | 199 | 112 | ||||||||||||
| ND6 (size: 522 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 22 (12.72%)
Alanine (Ala, A)
n = 18 (10.4%)
Serine (Ser, S)
n = 19 (10.98%)
Threonine (Thr, T)
n = 5 (2.89%)
Cysteine (Cys, C)
n = 1 (0.58%)
Valine (Val, V)
n = 25 (14.45%)
Leucine (Leu, L)
n = 26 (15.03%)
Isoleucine (Ile, I)
n = 7 (4.05%)
Methionine (Met, M)
n = 5 (2.89%)
Proline (Pro, P)
n = 6 (3.47%)
Phenylalanine (Phe, F)
n = 9 (5.2%)
Tyrosine (Tyr, Y)
n = 8 (4.62%)
Tryptophan (Trp, W)
n = 4 (2.31%)
Aspartic acid (Asp, D)
n = 4 (2.31%)
Glutamic acid (Glu, E)
n = 4 (2.31%)
Asparagine (Asn, N)
n = 3 (1.73%)
Glutamine (Gln, Q)
n = 1 (0.58%)
Histidine (His, H)
n = 2 (1.16%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 3 (1.73%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 7 | 0 | 1 | 4 | 1 | 1 | 4 | 8 | 0 | 1 | 9 | 4 | 6 | 6 | 7 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 1 | 0 | 6 | 2 | 5 | 5 | 1 | 1 | 6 | 14 | 2 | 1 | 1 | 2 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 1 | 0 | 2 | 8 | 1 | 3 | 4 | 3 | 0 | 8 | 0 | 3 | 8 | 2 | 1 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 0 | 4 | 4 | 0 | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 73 | 22 | 24 | 55 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 33 | 45 | 24 | 72 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 59 | 15 | 34 | 66 | ||||||||||||
| Total protein-coding genes (size: 11461 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 232 (6.08%)
Alanine (Ala, A)
n = 350 (9.17%)
Serine (Ser, S)
n = 251 (6.58%)
Threonine (Thr, T)
n = 322 (8.44%)
Cysteine (Cys, C)
n = 33 (0.86%)
Valine (Val, V)
n = 199 (5.21%)
Leucine (Leu, L)
n = 632 (16.56%)
Isoleucine (Ile, I)
n = 286 (7.49%)
Methionine (Met, M)
n = 155 (4.06%)
Proline (Pro, P)
n = 218 (5.71%)
Phenylalanine (Phe, F)
n = 256 (6.71%)
Tyrosine (Tyr, Y)
n = 110 (2.88%)
Tryptophan (Trp, W)
n = 112 (2.93%)
Aspartic acid (Asp, D)
n = 79 (2.07%)
Glutamic acid (Glu, E)
n = 102 (2.67%)
Asparagine (Asn, N)
n = 117 (3.07%)
Glutamine (Gln, Q)
n = 91 (2.38%)
Histidine (His, H)
n = 110 (2.88%)
Lysine (Lys, K)
n = 77 (2.02%)
Arginine (Arg, R)
n = 78 (2.04%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 156 | 130 | 101 | 132 | 155 | 179 | 59 | 86 | 65 | 26 | 56 | 55 | 62 | 26 | 104 | 152 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 54 | 7 | 26 | 65 | 166 | 106 | 13 | 18 | 73 | 91 | 50 | 33 | 106 | 68 | 11 | 42 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 126 | 136 | 18 | 40 | 77 | 62 | 18 | 11 | 43 | 34 | 76 | 21 | 21 | 34 | 83 | 22 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 88 | 82 | 20 | 18 | 61 | 65 | 12 | 8 | 16 | 50 | 4 | 1 | 0 | 6 | 1 | 91 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 962 | 1022 | 1012 | 822 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 510 | 1087 | 693 | 1528 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 354 | 1433 | 1251 | 780 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​T​r​i​c​h​i​u​r​u​s​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ l​e​p​t​u​r​u​s​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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