Viewing data for Garrulus glandarius


Scientific name Garrulus glandarius
Common name Jay
Maximum lifespan 17.90 years (Garrulus glandarius@AnAge)

Total mtDNA (size: 16930 bases) GC AT G C A T
Base content (bases) 7406 9524 4985 2421 4291 5233
Base content per 1 kb (bases) 437 563 294 143 253 309
Base content (%) 43.7% 56.3%
Total protein-coding genes (size: 11382 bases) GC AT G C A T
Base content (bases) 5043 6339 3578 1465 2912 3427
Base content per 1 kb (bases) 443 557 314 129 256 301
Base content (%) 44.3% 55.7%
D-loop: No data available for this section.
Total tRNA-coding genes (size: 1545 bases) GC AT G C A T
Base content (bases) 637 908 370 267 387 521
Base content per 1 kb (bases) 412 588 239 173 250 337
Base content (%) 41.2% 58.8%
Total rRNA-coding genes (size: 2578 bases) GC AT G C A T
Base content (bases) 1160 1418 633 527 567 851
Base content per 1 kb (bases) 450 550 246 204 220 330
Base content (%) 45.0% 55.0%
12S rRNA gene (size: 978 bases) GC AT G C A T
Base content (bases) 470 508 261 209 209 299
Base content per 1 kb (bases) 481 519 267 214 214 306
Base content (%) 48.1% 51.9%
16S rRNA gene (size: 1600 bases) GC AT G C A T
Base content (bases) 690 910 372 318 358 552
Base content per 1 kb (bases) 431 569 233 199 224 345
Base content (%) 43.1% 56.9%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 288 396 224 64 181 215
Base content per 1 kb (bases) 421 579 327 94 265 314
Base content (%) 42.1% 57.9%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 67 101 57 10 44 57
Base content per 1 kb (bases) 399 601 339 60 262 339
Base content (%) 39.9% 60.1%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 714 837 450 264 407 430
Base content per 1 kb (bases) 460 540 290 170 262 277
Base content (%) 46.0% 54.0%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 306 378 202 104 166 212
Base content per 1 kb (bases) 447 553 295 152 243 310
Base content (%) 44.7% 55.3%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 379 405 253 126 195 210
Base content per 1 kb (bases) 483 517 323 161 249 268
Base content (%) 48.3% 51.7%
CYTB (size: 1143 bases) GC AT G C A T
Base content (bases) 510 633 365 145 305 328
Base content per 1 kb (bases) 446 554 319 127 267 287
Base content (%) 44.6% 55.4%
ND1 (size: 978 bases) GC AT G C A T
Base content (bases) 433 545 303 130 261 284
Base content per 1 kb (bases) 443 557 310 133 267 290
Base content (%) 44.3% 55.7%
ND2 (size: 1041 bases) GC AT G C A T
Base content (bases) 465 576 356 109 259 317
Base content per 1 kb (bases) 447 553 342 105 249 305
Base content (%) 44.7% 55.3%
ND3 (size: 351 bases) GC AT G C A T
Base content (bases) 151 200 105 46 96 104
Base content per 1 kb (bases) 430 570 299 131 274 296
Base content (%) 43.0% 57.0%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 588 790 436 152 349 441
Base content per 1 kb (bases) 427 573 316 110 253 320
Base content (%) 42.7% 57.3%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 141 156 101 40 82 74
Base content per 1 kb (bases) 475 525 340 135 276 249
Base content (%) 47.5% 52.5%
ND5 (size: 1818 bases) GC AT G C A T
Base content (bases) 772 1046 558 214 475 571
Base content per 1 kb (bases) 425 575 307 118 261 314
Base content (%) 42.5% 57.5%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 234 288 171 63 96 192
Base content per 1 kb (bases) 448 552 328 121 184 368
Base content (%) 44.8% 55.2%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 15 (6.61%)
Serine (Ser, S)
n = 17 (7.49%)
Threonine (Thr, T)
n = 24 (10.57%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 7 (3.08%)
Leucine (Leu, L)
n = 63 (27.75%)
Isoleucine (Ile, I)
n = 20 (8.81%)
Methionine (Met, M)
n = 8 (3.52%)
Proline (Pro, P)
n = 15 (6.61%)
Phenylalanine (Phe, F)
n = 8 (3.52%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 9 (3.96%)
Histidine (His, H)
n = 3 (1.32%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 12 6 7 9 42 0 4 9 0 1 2 3 1 4 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 6 5 4 0 1 5 2 0 1 5 9 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 12 0 3 2 5 1 1 5 2 1 0 1 0 9 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 3 1 1 0 4 0 1 2 2 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
35 90 71 32
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
23 65 34 106
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 69 110 43
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPNPWFFIMLTSWITYSMIIQPKLLSFISMNPPSNKMHTTPASTPWTWPWT*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.82%)
Serine (Ser, S)
n = 6 (10.91%)
Threonine (Thr, T)
n = 7 (12.73%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 4 (7.27%)
Isoleucine (Ile, I)
n = 5 (9.09%)
Methionine (Met, M)
n = 5 (9.09%)
Proline (Pro, P)
n = 9 (16.36%)
Phenylalanine (Phe, F)
n = 3 (5.45%)
Tyrosine (Tyr, Y)
n = 1 (1.82%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 4 (7.27%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 1 (1.82%)
Lysine (Lys, K)
n = 2 (3.64%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 4 2 0 0 4 0 0 2 0 0 0 0 0 3 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 1 0 0 0 0 0 0 0 2 3 4 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 1 0 1 3 1 0 0 1 0 1 0 0 2 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
1 16 24 15
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 22 11 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 19 22 12
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 47 (9.11%)
Serine (Ser, S)
n = 28 (5.43%)
Threonine (Thr, T)
n = 36 (6.98%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 37 (7.17%)
Leucine (Leu, L)
n = 63 (12.21%)
Isoleucine (Ile, I)
n = 42 (8.14%)
Methionine (Met, M)
n = 23 (4.46%)
Proline (Pro, P)
n = 30 (5.81%)
Phenylalanine (Phe, F)
n = 43 (8.33%)
Tyrosine (Tyr, Y)
n = 17 (3.29%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 9 (1.74%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 23 14 9 9 39 6 0 8 1 7 11 15 4 11 32
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 0 1 5 18 21 3 9 8 28 2 6 5 18 1 11
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 13 1 5 8 11 0 1 3 3 14 0 0 4 11 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 8 2 1 14 9 0 1 2 5 0 0 1 0 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
156 129 130 102
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
78 137 94 208
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
30 184 206 97
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 16 (7.05%)
Serine (Ser, S)
n = 20 (8.81%)
Threonine (Thr, T)
n = 16 (7.05%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 18 (7.93%)
Leucine (Leu, L)
n = 30 (13.22%)
Isoleucine (Ile, I)
n = 13 (5.73%)
Methionine (Met, M)
n = 12 (5.29%)
Proline (Pro, P)
n = 12 (5.29%)
Phenylalanine (Phe, F)
n = 10 (4.41%)
Tyrosine (Tyr, Y)
n = 7 (3.08%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 13 (5.73%)
Glutamic acid (Glu, E)
n = 14 (6.17%)
Asparagine (Asn, N)
n = 6 (2.64%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 8 (3.52%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 9 8 3 4 19 3 1 7 0 1 9 7 1 4 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 3 5 7 3 1 1 2 5 0 4 1 7 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 6 0 4 5 7 0 2 2 0 7 0 0 2 4 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 13 1 2 11 4 0 1 0 4 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
69 61 55 43
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 60 60 83
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 81 97 40
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 22 (8.46%)
Serine (Ser, S)
n = 15 (5.77%)
Threonine (Thr, T)
n = 22 (8.46%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 18 (6.92%)
Leucine (Leu, L)
n = 31 (11.92%)
Isoleucine (Ile, I)
n = 14 (5.38%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 14 (5.38%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 6 (2.31%)
Glutamic acid (Glu, E)
n = 7 (2.69%)
Asparagine (Asn, N)
n = 3 (1.15%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 5 (1.92%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 8 6 4 8 18 1 0 6 1 2 10 6 0 2 21
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 1 4 9 9 0 1 8 8 2 4 3 6 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
8 8 3 4 3 3 1 1 3 4 8 0 0 0 3 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 6 1 2 4 5 0 0 1 4 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 73 57 59
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
41 69 56 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
13 111 97 40
CYTB (size: 1143 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.32%)
Alanine (Ala, A)
n = 25 (6.58%)
Serine (Ser, S)
n = 22 (5.79%)
Threonine (Thr, T)
n = 25 (6.58%)
Cysteine (Cys, C)
n = 4 (1.05%)
Valine (Val, V)
n = 21 (5.53%)
Leucine (Leu, L)
n = 65 (17.11%)
Isoleucine (Ile, I)
n = 35 (9.21%)
Methionine (Met, M)
n = 8 (2.11%)
Proline (Pro, P)
n = 25 (6.58%)
Phenylalanine (Phe, F)
n = 30 (7.89%)
Tyrosine (Tyr, Y)
n = 12 (3.16%)
Tryptophan (Trp, W)
n = 11 (2.89%)
Aspartic acid (Asp, D)
n = 10 (2.63%)
Glutamic acid (Glu, E)
n = 7 (1.84%)
Asparagine (Asn, N)
n = 19 (5.0%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 12 (3.16%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 24 7 6 11 43 4 1 8 0 5 7 9 0 8 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 4 4 13 7 1 1 6 16 1 9 8 8 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 11 0 3 7 10 0 1 1 2 10 0 0 3 16 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 6 1 3 7 8 1 2 0 6 0 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
87 117 98 79
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
49 95 78 159
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
9 153 152 67
ND1 (size: 978 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.31%)
Alanine (Ala, A)
n = 30 (9.23%)
Serine (Ser, S)
n = 25 (7.69%)
Threonine (Thr, T)
n = 19 (5.85%)
Cysteine (Cys, C)
n = 2 (0.62%)
Valine (Val, V)
n = 15 (4.62%)
Leucine (Leu, L)
n = 61 (18.77%)
Isoleucine (Ile, I)
n = 26 (8.0%)
Methionine (Met, M)
n = 14 (4.31%)
Proline (Pro, P)
n = 26 (8.0%)
Phenylalanine (Phe, F)
n = 19 (5.85%)
Tyrosine (Tyr, Y)
n = 14 (4.31%)
Tryptophan (Trp, W)
n = 8 (2.46%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.38%)
Asparagine (Asn, N)
n = 13 (4.0%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 3 (0.92%)
Lysine (Lys, K)
n = 7 (2.15%)
Arginine (Arg, R)
n = 8 (2.46%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 15 10 6 10 34 5 6 5 1 1 3 11 0 8 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 2 6 9 14 1 2 2 8 2 3 12 11 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 8 0 5 9 5 0 2 4 5 9 1 0 2 11 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 9 2 1 3 6 1 1 2 5 0 1 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
74 98 86 68
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
39 94 58 135
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 111 140 58
ND2 (size: 1041 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.76%)
Alanine (Ala, A)
n = 28 (8.09%)
Serine (Ser, S)
n = 29 (8.38%)
Threonine (Thr, T)
n = 42 (12.14%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 13 (3.76%)
Leucine (Leu, L)
n = 64 (18.5%)
Isoleucine (Ile, I)
n = 29 (8.38%)
Methionine (Met, M)
n = 20 (5.78%)
Proline (Pro, P)
n = 21 (6.07%)
Phenylalanine (Phe, F)
n = 14 (4.05%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 13 (3.76%)
Glutamine (Gln, Q)
n = 11 (3.18%)
Histidine (His, H)
n = 9 (2.6%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 18 16 10 17 30 3 4 8 3 0 7 5 1 1 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 6 10 11 1 0 6 6 1 4 9 8 0 14
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 11 2 2 12 9 2 1 3 1 6 0 0 3 10 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 4 0 1 0 12 1 1 1 2 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
59 105 121 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 116 59 140
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 135 137 57
ND3 (size: 1041 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 13 (3.76%)
Alanine (Ala, A)
n = 28 (8.09%)
Serine (Ser, S)
n = 29 (8.38%)
Threonine (Thr, T)
n = 42 (12.14%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 13 (3.76%)
Leucine (Leu, L)
n = 64 (18.5%)
Isoleucine (Ile, I)
n = 29 (8.38%)
Methionine (Met, M)
n = 20 (5.78%)
Proline (Pro, P)
n = 21 (6.07%)
Phenylalanine (Phe, F)
n = 14 (4.05%)
Tyrosine (Tyr, Y)
n = 7 (2.02%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 13 (3.76%)
Glutamine (Gln, Q)
n = 11 (3.18%)
Histidine (His, H)
n = 9 (2.6%)
Lysine (Lys, K)
n = 13 (3.76%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 18 16 10 17 30 3 4 8 3 0 7 5 1 1 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 6 10 11 1 0 6 6 1 4 9 8 0 14
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
15 11 2 2 12 9 2 1 3 1 6 0 0 3 10 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 4 0 1 0 12 1 1 1 2 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
59 105 121 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 116 59 140
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 135 137 57
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.93%)
Alanine (Ala, A)
n = 34 (7.42%)
Serine (Ser, S)
n = 35 (7.64%)
Threonine (Thr, T)
n = 44 (9.61%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 17 (3.71%)
Leucine (Leu, L)
n = 92 (20.09%)
Isoleucine (Ile, I)
n = 44 (9.61%)
Methionine (Met, M)
n = 27 (5.9%)
Proline (Pro, P)
n = 28 (6.11%)
Phenylalanine (Phe, F)
n = 12 (2.62%)
Tyrosine (Tyr, Y)
n = 13 (2.84%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 2 (0.44%)
Glutamic acid (Glu, E)
n = 10 (2.18%)
Asparagine (Asn, N)
n = 17 (3.71%)
Glutamine (Gln, Q)
n = 13 (2.84%)
Histidine (His, H)
n = 17 (3.71%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
21 23 25 10 19 50 8 5 12 1 4 4 9 0 3 9
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 3 6 13 15 0 3 6 8 1 5 7 15 1 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 17 2 4 9 12 1 1 8 6 7 0 0 7 10 9
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 8 2 0 2 10 0 0 1 10 0 0 0 0 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
81 156 151 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 132 82 192
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
18 148 208 85
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 3 (3.06%)
Alanine (Ala, A)
n = 13 (13.27%)
Serine (Ser, S)
n = 13 (13.27%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 2 (2.04%)
Leucine (Leu, L)
n = 22 (22.45%)
Isoleucine (Ile, I)
n = 2 (2.04%)
Methionine (Met, M)
n = 6 (6.12%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 6 (6.12%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 3 (3.06%)
Histidine (His, H)
n = 6 (6.12%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 4 2 2 16 2 0 3 0 0 2 0 0 2 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 3 2 6 5 0 0 2 1 0 1 1 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
4 2 1 6 2 1 0 2 2 1 0 1 0 1 1 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 2 0 0 1 0 0 0 1 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
21 35 22 21
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
13 32 16 38
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 34 36 23
ND5 (size: 1818 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 33 (5.45%)
Alanine (Ala, A)
n = 49 (8.1%)
Serine (Ser, S)
n = 51 (8.43%)
Threonine (Thr, T)
n = 62 (10.25%)
Cysteine (Cys, C)
n = 7 (1.16%)
Valine (Val, V)
n = 19 (3.14%)
Leucine (Leu, L)
n = 100 (16.53%)
Isoleucine (Ile, I)
n = 60 (9.92%)
Methionine (Met, M)
n = 24 (3.97%)
Proline (Pro, P)
n = 30 (4.96%)
Phenylalanine (Phe, F)
n = 37 (6.12%)
Tyrosine (Tyr, Y)
n = 13 (2.15%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 9 (1.49%)
Glutamic acid (Glu, E)
n = 12 (1.98%)
Asparagine (Asn, N)
n = 27 (4.46%)
Glutamine (Gln, Q)
n = 18 (2.98%)
Histidine (His, H)
n = 13 (2.15%)
Lysine (Lys, K)
n = 20 (3.31%)
Arginine (Arg, R)
n = 9 (1.49%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
29 31 22 10 14 60 4 12 15 3 4 3 11 1 13 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 6 12 21 15 1 3 9 19 2 7 9 12 2 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
32 20 2 5 15 20 1 1 9 1 12 1 0 12 15 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 12 0 2 7 19 1 0 3 6 0 1 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
122 158 204 122
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
72 182 112 240
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
20 218 255 113
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (16.18%)
Alanine (Ala, A)
n = 12 (6.94%)
Serine (Ser, S)
n = 15 (8.67%)
Threonine (Thr, T)
n = 2 (1.16%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 34 (19.65%)
Leucine (Leu, L)
n = 24 (13.87%)
Isoleucine (Ile, I)
n = 6 (3.47%)
Methionine (Met, M)
n = 10 (5.78%)
Proline (Pro, P)
n = 4 (2.31%)
Phenylalanine (Phe, F)
n = 8 (4.62%)
Tyrosine (Tyr, Y)
n = 7 (4.05%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 3 (1.73%)
Glutamic acid (Glu, E)
n = 3 (1.73%)
Asparagine (Asn, N)
n = 5 (2.89%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 5 (2.89%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
6 0 6 2 1 4 9 8 0 0 15 1 9 9 7 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 1 1 1 6 4 6 1 6 15 4 0 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 1 8 0 3 1 3 0 6 1 1 0 4 1 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 1 3 0 0 0 0 0 2 3 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
80 25 26 43
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 30 19 82
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
48 8 51 67
Total protein-coding genes (size: 11399 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 220 (5.79%)
Alanine (Ala, A)
n = 300 (7.9%)
Serine (Ser, S)
n = 284 (7.48%)
Threonine (Thr, T)
n = 314 (8.27%)
Cysteine (Cys, C)
n = 28 (0.74%)
Valine (Val, V)
n = 204 (5.37%)
Leucine (Leu, L)
n = 646 (17.01%)
Isoleucine (Ile, I)
n = 308 (8.11%)
Methionine (Met, M)
n = 170 (4.48%)
Proline (Pro, P)
n = 223 (5.87%)
Phenylalanine (Phe, F)
n = 221 (5.82%)
Tyrosine (Tyr, Y)
n = 109 (2.87%)
Tryptophan (Trp, W)
n = 107 (2.82%)
Aspartic acid (Asp, D)
n = 68 (1.79%)
Glutamic acid (Glu, E)
n = 90 (2.37%)
Asparagine (Asn, N)
n = 136 (3.58%)
Glutamine (Gln, Q)
n = 97 (2.55%)
Histidine (His, H)
n = 107 (2.82%)
Lysine (Lys, K)
n = 84 (2.21%)
Arginine (Arg, R)
n = 72 (1.9%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
131 177 129 71 108 375 47 44 87 10 40 60 87 17 68 153
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
41 2 26 58 115 115 12 28 55 110 27 51 64 103 5 65
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
128 109 12 50 79 89 8 17 41 31 78 4 1 41 95 40
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
67 78 12 17 51 80 4 7 13 48 4 2 1 8 0 103
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
882 1100 1073 744
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
488 1063 699 1549
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
205 1310 1567 717 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​G​a​r​r​u​l​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ g​l​a​n​d​a​r​i​u​s​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.