Viewing data for Cygnus olor


Scientific name Cygnus olor
Common name Mute swan
Maximum lifespan 70.00 years (Cygnus olor@AnAge)

Total mtDNA (size: 16739 bases) GC AT G C A T
Base content (bases) 7996 8743 5377 2619 3782 4961
Base content per 1 kb (bases) 478 522 321 156 226 296
Base content (%) 47.8% 52.2%
Total protein-coding genes (size: 11383 bases) GC AT G C A T
Base content (bases) 5552 5831 3892 1660 2578 3253
Base content per 1 kb (bases) 488 512 342 146 226 286
Base content (%) 48.8% 51.2%
D-loop (size: 1169 bases) GC AT G C A T
Base content (bases) 543 626 374 169 290 336
Base content per 1 kb (bases) 464 536 320 145 248 287
Base content (%) 46.4% 53.6%
Total tRNA-coding genes (size: 1543 bases) GC AT G C A T
Base content (bases) 654 889 393 261 381 508
Base content per 1 kb (bases) 424 576 255 169 247 329
Base content (%) 42.4% 57.6%
Total rRNA-coding genes (size: 2597 bases) GC AT G C A T
Base content (bases) 1219 1378 691 528 524 854
Base content per 1 kb (bases) 469 531 266 203 202 329
Base content (%) 46.9% 53.1%
12S rRNA gene (size: 991 bases) GC AT G C A T
Base content (bases) 480 511 278 202 198 313
Base content per 1 kb (bases) 484 516 281 204 200 316
Base content (%) 48.4% 51.6%
16S rRNA gene (size: 1606 bases) GC AT G C A T
Base content (bases) 739 867 413 326 326 541
Base content per 1 kb (bases) 460 540 257 203 203 337
Base content (%) 46.0% 54.0%

ATP6 (size: 684 bases) GC AT G C A T
Base content (bases) 331 353 242 89 169 184
Base content per 1 kb (bases) 484 516 354 130 247 269
Base content (%) 48.4% 51.6%
ATP8 (size: 168 bases) GC AT G C A T
Base content (bases) 72 96 59 13 38 58
Base content per 1 kb (bases) 429 571 351 77 226 345
Base content (%) 42.9% 57.1%
COX1 (size: 1551 bases) GC AT G C A T
Base content (bases) 759 792 492 267 375 417
Base content per 1 kb (bases) 489 511 317 172 242 269
Base content (%) 48.9% 51.1%
COX2 (size: 687 bases) GC AT G C A T
Base content (bases) 338 349 218 120 156 193
Base content per 1 kb (bases) 492 508 317 175 227 281
Base content (%) 49.2% 50.8%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 385 399 257 128 187 212
Base content per 1 kb (bases) 491 509 328 163 239 270
Base content (%) 49.1% 50.9%
CYTB (size: 1143 bases) GC AT G C A T
Base content (bases) 560 583 400 160 271 312
Base content per 1 kb (bases) 490 510 350 140 237 273
Base content (%) 49.0% 51.0%
ND1 (size: 978 bases) GC AT G C A T
Base content (bases) 480 498 317 163 245 253
Base content per 1 kb (bases) 491 509 324 167 251 259
Base content (%) 49.1% 50.9%
ND2 (size: 1039 bases) GC AT G C A T
Base content (bases) 511 528 379 132 227 301
Base content per 1 kb (bases) 492 508 365 127 218 290
Base content (%) 49.2% 50.8%
ND3 (size: 352 bases) GC AT G C A T
Base content (bases) 179 173 119 60 90 83
Base content per 1 kb (bases) 509 491 338 170 256 236
Base content (%) 50.9% 49.1%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 648 730 485 163 310 420
Base content per 1 kb (bases) 470 530 352 118 225 305
Base content (%) 47.0% 53.0%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 148 149 102 46 72 77
Base content per 1 kb (bases) 498 502 343 155 242 259
Base content (%) 49.8% 50.2%
ND5 (size: 1818 bases) GC AT G C A T
Base content (bases) 877 941 619 258 390 551
Base content per 1 kb (bases) 482 518 340 142 215 303
Base content (%) 48.2% 51.8%
ND6 (size: 522 bases) GC AT G C A T
Base content (bases) 269 253 206 63 52 201
Base content per 1 kb (bases) 515 485 395 121 100 385
Base content (%) 51.5% 48.5%

ATP6 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (3.08%)
Alanine (Ala, A)
n = 17 (7.49%)
Serine (Ser, S)
n = 15 (6.61%)
Threonine (Thr, T)
n = 21 (9.25%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 10 (4.41%)
Leucine (Leu, L)
n = 58 (25.55%)
Isoleucine (Ile, I)
n = 17 (7.49%)
Methionine (Met, M)
n = 12 (5.29%)
Proline (Pro, P)
n = 17 (7.49%)
Phenylalanine (Phe, F)
n = 8 (3.52%)
Tyrosine (Tyr, Y)
n = 3 (1.32%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 4 (1.76%)
Asparagine (Asn, N)
n = 12 (5.29%)
Glutamine (Gln, Q)
n = 8 (3.52%)
Histidine (His, H)
n = 5 (2.2%)
Lysine (Lys, K)
n = 3 (1.32%)
Arginine (Arg, R)
n = 5 (2.2%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 12 9 5 13 19 12 7 8 0 0 5 3 2 2 6
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 0 2 11 2 2 1 4 2 0 2 7 7 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 10 3 2 7 1 1 0 4 1 2 3 2 2 10 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 4 0 0 1 2 1 1 2 2 0 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
39 84 69 36
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
20 66 37 105
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
30 92 78 28
ATP8 (size: 168 bases)
Amino acid sequence: MPQLNPAPWFSIMVMTWLTLALLIQPKLLAFTTMNPPSSKTSLTTKPTPWPWPWT*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 3 (5.45%)
Serine (Ser, S)
n = 4 (7.27%)
Threonine (Thr, T)
n = 9 (16.36%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.82%)
Leucine (Leu, L)
n = 8 (14.55%)
Isoleucine (Ile, I)
n = 2 (3.64%)
Methionine (Met, M)
n = 4 (7.27%)
Proline (Pro, P)
n = 10 (18.18%)
Phenylalanine (Phe, F)
n = 2 (3.64%)
Tyrosine (Tyr, Y)
n = 0 (0%)
Tryptophan (Trp, W)
n = 5 (9.09%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 2 (3.64%)
Glutamine (Gln, Q)
n = 2 (3.64%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 3 (5.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 3 2 1 1 0 3 2 0 0 1 0 0 0 2
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 1 1 1 0 0 0 0 0 0 4 6 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
6 2 0 0 0 2 1 1 0 0 0 0 1 0 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 0 0 0 0 3 0 0 0 0 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
4 16 21 15
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
6 25 8 17
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
3 18 29 6
COX1 (size: 1551 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.11%)
Alanine (Ala, A)
n = 46 (8.91%)
Serine (Ser, S)
n = 27 (5.23%)
Threonine (Thr, T)
n = 39 (7.56%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 35 (6.78%)
Leucine (Leu, L)
n = 63 (12.21%)
Isoleucine (Ile, I)
n = 42 (8.14%)
Methionine (Met, M)
n = 24 (4.65%)
Proline (Pro, P)
n = 30 (5.81%)
Phenylalanine (Phe, F)
n = 42 (8.14%)
Tyrosine (Tyr, Y)
n = 17 (3.29%)
Tryptophan (Trp, W)
n = 17 (3.29%)
Aspartic acid (Asp, D)
n = 15 (2.91%)
Glutamic acid (Glu, E)
n = 10 (1.94%)
Asparagine (Asn, N)
n = 15 (2.91%)
Glutamine (Gln, Q)
n = 10 (1.94%)
Histidine (His, H)
n = 19 (3.68%)
Lysine (Lys, K)
n = 9 (1.74%)
Arginine (Arg, R)
n = 8 (1.55%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 27 18 5 13 31 9 4 8 2 3 15 15 2 12 30
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 0 1 5 29 12 0 3 13 25 6 4 11 13 2 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
19 13 2 2 9 12 1 1 2 1 16 3 1 2 13 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
16 8 2 2 13 9 0 0 1 7 0 0 1 0 0 14
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
153 125 133 106
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 139 95 206
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
37 228 189 63
COX2 (size: 687 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 9 (3.95%)
Alanine (Ala, A)
n = 16 (7.02%)
Serine (Ser, S)
n = 21 (9.21%)
Threonine (Thr, T)
n = 12 (5.26%)
Cysteine (Cys, C)
n = 3 (1.32%)
Valine (Val, V)
n = 20 (8.77%)
Leucine (Leu, L)
n = 30 (13.16%)
Isoleucine (Ile, I)
n = 17 (7.46%)
Methionine (Met, M)
n = 7 (3.07%)
Proline (Pro, P)
n = 14 (6.14%)
Phenylalanine (Phe, F)
n = 8 (3.51%)
Tyrosine (Tyr, Y)
n = 9 (3.95%)
Tryptophan (Trp, W)
n = 5 (2.19%)
Aspartic acid (Asp, D)
n = 13 (5.7%)
Glutamic acid (Glu, E)
n = 14 (6.14%)
Asparagine (Asn, N)
n = 5 (2.19%)
Glutamine (Gln, Q)
n = 7 (3.07%)
Histidine (His, H)
n = 9 (3.95%)
Lysine (Lys, K)
n = 4 (1.75%)
Arginine (Arg, R)
n = 5 (2.19%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 15 5 1 9 12 6 2 7 0 4 6 6 4 4 4
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 3 4 9 3 0 0 3 4 2 2 3 9 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 4 1 1 5 11 1 0 3 4 5 1 0 1 4 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 12 2 1 12 2 2 0 2 1 2 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 63 48 46
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 60 62 82
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 95 83 28
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (7.31%)
Alanine (Ala, A)
n = 22 (8.46%)
Serine (Ser, S)
n = 19 (7.31%)
Threonine (Thr, T)
n = 21 (8.08%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 13 (5.0%)
Leucine (Leu, L)
n = 33 (12.69%)
Isoleucine (Ile, I)
n = 16 (6.15%)
Methionine (Met, M)
n = 10 (3.85%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 24 (9.23%)
Tyrosine (Tyr, Y)
n = 9 (3.46%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 4 (1.54%)
Glutamine (Gln, Q)
n = 6 (2.31%)
Histidine (His, H)
n = 18 (6.92%)
Lysine (Lys, K)
n = 4 (1.54%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 12 9 1 13 13 2 4 5 1 2 5 5 1 5 19
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 4 10 5 3 1 5 10 3 0 3 8 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 10 0 2 5 6 1 0 5 0 9 1 0 0 4 6
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 4 4 0 5 3 1 0 0 5 0 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 70 60 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 69 54 96
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
19 118 98 26
CYTB (size: 1143 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 23 (6.05%)
Alanine (Ala, A)
n = 33 (8.68%)
Serine (Ser, S)
n = 24 (6.32%)
Threonine (Thr, T)
n = 22 (5.79%)
Cysteine (Cys, C)
n = 5 (1.32%)
Valine (Val, V)
n = 16 (4.21%)
Leucine (Leu, L)
n = 64 (16.84%)
Isoleucine (Ile, I)
n = 34 (8.95%)
Methionine (Met, M)
n = 10 (2.63%)
Proline (Pro, P)
n = 25 (6.58%)
Phenylalanine (Phe, F)
n = 28 (7.37%)
Tyrosine (Tyr, Y)
n = 13 (3.42%)
Tryptophan (Trp, W)
n = 11 (2.89%)
Aspartic acid (Asp, D)
n = 9 (2.37%)
Glutamic acid (Glu, E)
n = 7 (1.84%)
Asparagine (Asn, N)
n = 18 (4.74%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 12 (3.16%)
Lysine (Lys, K)
n = 10 (2.63%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 30 9 2 17 33 9 3 7 1 0 4 11 1 2 26
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 5 5 20 8 0 0 8 7 8 7 7 10 1 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 5 1 5 6 11 0 1 1 3 10 1 0 0 18 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 7 0 1 8 10 0 0 2 6 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
88 114 96 83
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
49 102 78 152
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
23 184 138 36
ND1 (size: 978 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.31%)
Alanine (Ala, A)
n = 30 (9.23%)
Serine (Ser, S)
n = 28 (8.62%)
Threonine (Thr, T)
n = 18 (5.54%)
Cysteine (Cys, C)
n = 3 (0.92%)
Valine (Val, V)
n = 20 (6.15%)
Leucine (Leu, L)
n = 61 (18.77%)
Isoleucine (Ile, I)
n = 19 (5.85%)
Methionine (Met, M)
n = 17 (5.23%)
Proline (Pro, P)
n = 26 (8.0%)
Phenylalanine (Phe, F)
n = 20 (6.15%)
Tyrosine (Tyr, Y)
n = 14 (4.31%)
Tryptophan (Trp, W)
n = 8 (2.46%)
Aspartic acid (Asp, D)
n = 4 (1.23%)
Glutamic acid (Glu, E)
n = 11 (3.38%)
Asparagine (Asn, N)
n = 9 (2.77%)
Glutamine (Gln, Q)
n = 6 (1.85%)
Histidine (His, H)
n = 2 (0.62%)
Lysine (Lys, K)
n = 7 (2.15%)
Arginine (Arg, R)
n = 8 (2.46%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 12 7 6 9 37 5 2 5 1 2 5 6 7 5 15
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
10 0 3 5 15 10 0 1 5 6 2 4 11 8 3 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 9 0 5 6 7 2 0 8 2 12 2 2 0 9 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 7 4 0 4 7 0 0 1 4 3 0 1 0 0 6
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
79 99 79 69
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 94 53 137
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
42 124 121 39
ND2 (size: 1039 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (3.19%)
Alanine (Ala, A)
n = 40 (11.59%)
Serine (Ser, S)
n = 30 (8.7%)
Threonine (Thr, T)
n = 37 (10.72%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 10 (2.9%)
Leucine (Leu, L)
n = 63 (18.26%)
Isoleucine (Ile, I)
n = 27 (7.83%)
Methionine (Met, M)
n = 18 (5.22%)
Proline (Pro, P)
n = 23 (6.67%)
Phenylalanine (Phe, F)
n = 15 (4.35%)
Tyrosine (Tyr, Y)
n = 8 (2.32%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 12 (3.48%)
Glutamine (Gln, Q)
n = 9 (2.61%)
Histidine (His, H)
n = 9 (2.61%)
Lysine (Lys, K)
n = 14 (4.06%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 20 13 3 17 26 14 1 9 0 1 2 4 3 2 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 1 3 23 13 1 1 6 4 0 5 6 12 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 11 4 1 13 8 1 0 7 1 7 1 2 3 9 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 5 0 0 1 12 2 0 2 1 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 104 115 60
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 123 58 133
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
33 152 128 33
ND3 (size: 1039 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (3.19%)
Alanine (Ala, A)
n = 40 (11.59%)
Serine (Ser, S)
n = 30 (8.7%)
Threonine (Thr, T)
n = 37 (10.72%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 10 (2.9%)
Leucine (Leu, L)
n = 63 (18.26%)
Isoleucine (Ile, I)
n = 27 (7.83%)
Methionine (Met, M)
n = 18 (5.22%)
Proline (Pro, P)
n = 23 (6.67%)
Phenylalanine (Phe, F)
n = 15 (4.35%)
Tyrosine (Tyr, Y)
n = 8 (2.32%)
Tryptophan (Trp, W)
n = 10 (2.9%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 12 (3.48%)
Glutamine (Gln, Q)
n = 9 (2.61%)
Histidine (His, H)
n = 9 (2.61%)
Lysine (Lys, K)
n = 14 (4.06%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
7 20 13 3 17 26 14 1 9 0 1 2 4 3 2 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 1 3 23 13 1 1 6 4 0 5 6 12 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
16 11 4 1 13 8 1 0 7 1 7 1 2 3 9 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 5 0 0 1 12 2 0 2 1 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
67 104 115 60
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
32 123 58 133
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
33 152 128 33
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (4.59%)
Alanine (Ala, A)
n = 29 (6.33%)
Serine (Ser, S)
n = 39 (8.52%)
Threonine (Thr, T)
n = 53 (11.57%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 10 (2.18%)
Leucine (Leu, L)
n = 101 (22.05%)
Isoleucine (Ile, I)
n = 39 (8.52%)
Methionine (Met, M)
n = 22 (4.8%)
Proline (Pro, P)
n = 29 (6.33%)
Phenylalanine (Phe, F)
n = 16 (3.49%)
Tyrosine (Tyr, Y)
n = 14 (3.06%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 2 (0.44%)
Glutamic acid (Glu, E)
n = 10 (2.18%)
Asparagine (Asn, N)
n = 12 (2.62%)
Glutamine (Gln, Q)
n = 12 (2.62%)
Histidine (His, H)
n = 14 (3.06%)
Lysine (Lys, K)
n = 10 (2.18%)
Arginine (Arg, R)
n = 11 (2.4%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 30 17 4 15 61 14 7 12 0 1 4 5 0 2 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
5 0 3 2 15 11 1 4 6 9 2 2 9 15 3 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
27 22 0 4 12 12 3 1 7 2 12 3 0 1 11 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 9 1 0 2 6 4 0 4 7 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
72 160 144 83
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
55 142 74 188
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
36 183 202 38
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 6 (6.12%)
Alanine (Ala, A)
n = 7 (7.14%)
Serine (Ser, S)
n = 13 (13.27%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 4 (4.08%)
Leucine (Leu, L)
n = 18 (18.37%)
Isoleucine (Ile, I)
n = 4 (4.08%)
Methionine (Met, M)
n = 7 (7.14%)
Proline (Pro, P)
n = 3 (3.06%)
Phenylalanine (Phe, F)
n = 7 (7.14%)
Tyrosine (Tyr, Y)
n = 1 (1.02%)
Tryptophan (Trp, W)
n = 1 (1.02%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 3 (3.06%)
Asparagine (Asn, N)
n = 2 (2.04%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 6 (6.12%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 2 (2.04%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 3 4 1 2 10 5 0 2 0 0 0 4 0 2 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 2 1 4 2 0 0 4 2 0 0 2 1 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 1 1 1 3 6 0 0 3 0 1 0 0 0 2 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 3 0 0 1 0 0 0 1 0 1 0 0 1 0 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
21 31 24 23
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
15 28 16 40
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 43 37 9
ND5 (size: 1818 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 33 (5.45%)
Alanine (Ala, A)
n = 57 (9.42%)
Serine (Ser, S)
n = 41 (6.78%)
Threonine (Thr, T)
n = 64 (10.58%)
Cysteine (Cys, C)
n = 6 (0.99%)
Valine (Val, V)
n = 21 (3.47%)
Leucine (Leu, L)
n = 102 (16.86%)
Isoleucine (Ile, I)
n = 54 (8.93%)
Methionine (Met, M)
n = 30 (4.96%)
Proline (Pro, P)
n = 32 (5.29%)
Phenylalanine (Phe, F)
n = 32 (5.29%)
Tyrosine (Tyr, Y)
n = 12 (1.98%)
Tryptophan (Trp, W)
n = 12 (1.98%)
Aspartic acid (Asp, D)
n = 7 (1.16%)
Glutamic acid (Glu, E)
n = 13 (2.15%)
Asparagine (Asn, N)
n = 26 (4.3%)
Glutamine (Gln, Q)
n = 17 (2.81%)
Histidine (His, H)
n = 13 (2.15%)
Lysine (Lys, K)
n = 23 (3.8%)
Arginine (Arg, R)
n = 10 (1.65%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 42 26 6 24 50 16 6 13 4 0 7 11 3 10 22
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 6 6 35 15 1 2 7 17 7 1 11 15 5 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
34 21 2 3 14 11 2 0 11 1 11 1 0 5 21 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
13 9 4 0 7 18 5 0 3 7 0 1 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
131 168 209 98
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
73 183 111 239
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
54 268 231 53
ND6 (size: 522 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (14.45%)
Alanine (Ala, A)
n = 18 (10.4%)
Serine (Ser, S)
n = 11 (6.36%)
Threonine (Thr, T)
n = 2 (1.16%)
Cysteine (Cys, C)
n = 2 (1.16%)
Valine (Val, V)
n = 33 (19.08%)
Leucine (Leu, L)
n = 22 (12.72%)
Isoleucine (Ile, I)
n = 2 (1.16%)
Methionine (Met, M)
n = 9 (5.2%)
Proline (Pro, P)
n = 4 (2.31%)
Phenylalanine (Phe, F)
n = 17 (9.83%)
Tyrosine (Tyr, Y)
n = 7 (4.05%)
Tryptophan (Trp, W)
n = 5 (2.89%)
Aspartic acid (Asp, D)
n = 3 (1.73%)
Glutamic acid (Glu, E)
n = 4 (2.31%)
Asparagine (Asn, N)
n = 2 (1.16%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 1 (0.58%)
Lysine (Lys, K)
n = 1 (0.58%)
Arginine (Arg, R)
n = 5 (2.89%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 0 0 1 1 2 3 5 0 0 12 1 3 17 14 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 2 0 6 1 1 10 4 3 1 17 3 0 1 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 0 4 0 2 4 1 0 6 1 4 10 2 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 0 4 2 1 0 1 0 0 0 5 0 0 0 1 1
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
83 17 17 57
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
38 34 19 83
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
85 12 16 61
Total protein-coding genes (size: 11400 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 220 (5.79%)
Alanine (Ala, A)
n = 331 (8.72%)
Serine (Ser, S)
n = 280 (7.37%)
Threonine (Thr, T)
n = 310 (8.16%)
Cysteine (Cys, C)
n = 29 (0.76%)
Valine (Val, V)
n = 196 (5.16%)
Leucine (Leu, L)
n = 651 (17.14%)
Isoleucine (Ile, I)
n = 280 (7.37%)
Methionine (Met, M)
n = 175 (4.61%)
Proline (Pro, P)
n = 232 (6.11%)
Phenylalanine (Phe, F)
n = 228 (6.0%)
Tyrosine (Tyr, Y)
n = 109 (2.87%)
Tryptophan (Trp, W)
n = 107 (2.82%)
Aspartic acid (Asp, D)
n = 64 (1.69%)
Glutamic acid (Glu, E)
n = 95 (2.5%)
Asparagine (Asn, N)
n = 122 (3.21%)
Glutamine (Gln, Q)
n = 91 (2.4%)
Histidine (His, H)
n = 108 (2.84%)
Lysine (Lys, K)
n = 89 (2.34%)
Arginine (Arg, R)
n = 72 (1.9%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
69 211 124 38 146 305 99 45 81 10 25 56 75 40 64 164
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
51 3 26 47 181 85 18 17 65 90 48 30 76 110 16 37
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
149 109 15 31 81 94 17 6 51 22 87 23 18 16 106 19
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
89 71 24 7 57 72 17 1 19 41 11 1 2 5 2 84
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
906 1091 1036 766
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
488 1096 685 1530
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
411 1564 1392 432 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​C​y​g​n​u​s​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ o​l​o​r​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.