Viewing data for Macaca nigra


Scientific name Macaca nigra
Common name Celebes crested macaque
Maximum lifespan 34.00 years (Macaca nigra@AnAge)

Total mtDNA (size: 16564 bases) GC AT G C A T
Base content (bases) 7118 9446 4998 2120 4185 5261
Base content per 1 kb (bases) 430 570 302 128 253 318
Base content (%) 43.0% 57.0%
Total protein-coding genes (size: 11340 bases) GC AT G C A T
Base content (bases) 4903 6437 3631 1272 2914 3523
Base content per 1 kb (bases) 432 568 320 112 257 311
Base content (%) 43.2% 56.8%
D-loop (size: 1086 bases) GC AT G C A T
Base content (bases) 486 600 334 152 293 307
Base content per 1 kb (bases) 448 552 308 140 270 283
Base content (%) 44.8% 55.2%
Total tRNA-coding genes (size: 1502 bases) GC AT G C A T
Base content (bases) 580 922 355 225 397 525
Base content per 1 kb (bases) 386 614 236 150 264 350
Base content (%) 38.6% 61.4%
Total rRNA-coding genes (size: 2504 bases) GC AT G C A T
Base content (bases) 1078 1426 617 461 561 865
Base content per 1 kb (bases) 431 569 246 184 224 345
Base content (%) 43.1% 56.9%
12S rRNA gene (size: 947 bases) GC AT G C A T
Base content (bases) 418 529 237 181 213 316
Base content per 1 kb (bases) 441 559 250 191 225 334
Base content (%) 44.1% 55.9%
16S rRNA gene (size: 1557 bases) GC AT G C A T
Base content (bases) 660 897 380 280 348 549
Base content per 1 kb (bases) 424 576 244 180 224 353
Base content (%) 42.4% 57.6%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 293 388 229 64 165 223
Base content per 1 kb (bases) 430 570 336 94 242 327
Base content (%) 43.0% 57.0%
ATP8 (size: 207 bases) GC AT G C A T
Base content (bases) 88 119 71 17 46 73
Base content per 1 kb (bases) 425 575 343 82 222 353
Base content (%) 42.5% 57.5%
COX1 (size: 1545 bases) GC AT G C A T
Base content (bases) 684 861 434 250 453 408
Base content per 1 kb (bases) 443 557 281 162 293 264
Base content (%) 44.3% 55.7%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 289 395 195 94 179 216
Base content per 1 kb (bases) 423 577 285 137 262 316
Base content (%) 42.3% 57.7%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 364 420 257 107 203 217
Base content per 1 kb (bases) 464 536 328 136 259 277
Base content (%) 46.4% 53.6%
CYTB (size: 1141 bases) GC AT G C A T
Base content (bases) 520 621 386 134 287 334
Base content per 1 kb (bases) 456 544 338 117 252 293
Base content (%) 45.6% 54.4%
ND1 (size: 955 bases) GC AT G C A T
Base content (bases) 431 524 322 109 239 285
Base content per 1 kb (bases) 451 549 337 114 250 298
Base content (%) 45.1% 54.9%
ND2 (size: 1042 bases) GC AT G C A T
Base content (bases) 438 604 352 86 251 353
Base content per 1 kb (bases) 420 580 338 83 241 339
Base content (%) 42.0% 58.0%
ND3 (size: 346 bases) GC AT G C A T
Base content (bases) 139 207 102 37 97 110
Base content per 1 kb (bases) 402 598 295 107 280 318
Base content (%) 40.2% 59.8%
ND4 (size: 1378 bases) GC AT G C A T
Base content (bases) 575 803 446 129 366 437
Base content per 1 kb (bases) 417 583 324 94 266 317
Base content (%) 41.7% 58.3%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 123 174 90 33 88 86
Base content per 1 kb (bases) 414 586 303 111 296 290
Base content (%) 41.4% 58.6%
ND5 (size: 1806 bases) GC AT G C A T
Base content (bases) 760 1046 582 178 460 586
Base content per 1 kb (bases) 421 579 322 99 255 324
Base content (%) 42.1% 57.9%
ND6 (size: 528 bases) GC AT G C A T
Base content (bases) 218 310 179 39 96 214
Base content per 1 kb (bases) 413 587 339 74 182 405
Base content (%) 41.3% 58.7%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 6 (2.65%)
Alanine (Ala, A)
n = 21 (9.29%)
Serine (Ser, S)
n = 11 (4.87%)
Threonine (Thr, T)
n = 31 (13.72%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 7 (3.1%)
Leucine (Leu, L)
n = 46 (20.35%)
Isoleucine (Ile, I)
n = 19 (8.41%)
Methionine (Met, M)
n = 15 (6.64%)
Proline (Pro, P)
n = 15 (6.64%)
Phenylalanine (Phe, F)
n = 8 (3.54%)
Tyrosine (Tyr, Y)
n = 3 (1.33%)
Tryptophan (Trp, W)
n = 2 (0.88%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 14 (6.19%)
Glutamine (Gln, Q)
n = 9 (3.98%)
Histidine (His, H)
n = 6 (2.65%)
Lysine (Lys, K)
n = 5 (2.21%)
Arginine (Arg, R)
n = 4 (1.77%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 10 11 5 6 23 4 7 9 0 0 1 6 0 3 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 0 5 9 7 0 0 2 3 1 2 9 4 0 7
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
14 10 0 0 6 2 1 0 2 2 1 0 1 4 10 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
4 3 0 0 1 4 1 0 1 3 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
38 72 86 31
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
14 76 42 95
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 81 95 39
ATP8 (size: 207 bases)
Amino acid sequence: MPQLDTSTWFTTIMAMLPTLYLIMQLKLLNTNHYQPPLTKNPTLQSHNTRWQPKWTKTCLPLSQPQQF*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 1 (1.47%)
Serine (Ser, S)
n = 3 (4.41%)
Threonine (Thr, T)
n = 11 (16.18%)
Cysteine (Cys, C)
n = 1 (1.47%)
Valine (Val, V)
n = 0 (0%)
Leucine (Leu, L)
n = 11 (16.18%)
Isoleucine (Ile, I)
n = 2 (2.94%)
Methionine (Met, M)
n = 4 (5.88%)
Proline (Pro, P)
n = 8 (11.76%)
Phenylalanine (Phe, F)
n = 2 (2.94%)
Tyrosine (Tyr, Y)
n = 2 (2.94%)
Tryptophan (Trp, W)
n = 3 (4.41%)
Aspartic acid (Asp, D)
n = 1 (1.47%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 4 (5.88%)
Glutamine (Gln, Q)
n = 8 (11.76%)
Histidine (His, H)
n = 2 (2.94%)
Lysine (Lys, K)
n = 4 (5.88%)
Arginine (Arg, R)
n = 1 (1.47%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
1 1 1 5 0 4 0 2 5 3 0 0 0 0 1 1
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 0 0 0 0 1 0 0 0 0 1 5 2 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 4 2 1 1 0 1 0 0 1 1 0 0 0 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 0 0 0 1 4 0 0 1 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
2 28 25 14
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
5 23 22 19
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 20 26 13
COX1 (size: 1545 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 47 (9.14%)
Alanine (Ala, A)
n = 40 (7.78%)
Serine (Ser, S)
n = 33 (6.42%)
Threonine (Thr, T)
n = 32 (6.23%)
Cysteine (Cys, C)
n = 2 (0.39%)
Valine (Val, V)
n = 32 (6.23%)
Leucine (Leu, L)
n = 64 (12.45%)
Isoleucine (Ile, I)
n = 45 (8.75%)
Methionine (Met, M)
n = 29 (5.64%)
Proline (Pro, P)
n = 30 (5.84%)
Phenylalanine (Phe, F)
n = 41 (7.98%)
Tyrosine (Tyr, Y)
n = 20 (3.89%)
Tryptophan (Trp, W)
n = 16 (3.11%)
Aspartic acid (Asp, D)
n = 13 (2.53%)
Glutamic acid (Glu, E)
n = 9 (1.75%)
Asparagine (Asn, N)
n = 18 (3.5%)
Glutamine (Gln, Q)
n = 7 (1.36%)
Histidine (His, H)
n = 18 (3.5%)
Lysine (Lys, K)
n = 10 (1.95%)
Arginine (Arg, R)
n = 8 (1.56%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 26 21 8 10 26 7 11 7 0 7 7 14 4 20 21
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
8 1 1 9 18 13 0 8 20 14 5 6 17 7 0 8
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 14 1 9 9 9 0 0 6 8 12 3 2 7 11 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 9 0 6 7 10 0 2 3 3 0 0 0 1 0 13
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
141 114 140 120
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
79 129 96 211
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
30 191 172 122
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 10 (4.41%)
Alanine (Ala, A)
n = 13 (5.73%)
Serine (Ser, S)
n = 13 (5.73%)
Threonine (Thr, T)
n = 22 (9.69%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 13 (5.73%)
Leucine (Leu, L)
n = 32 (14.1%)
Isoleucine (Ile, I)
n = 21 (9.25%)
Methionine (Met, M)
n = 10 (4.41%)
Proline (Pro, P)
n = 16 (7.05%)
Phenylalanine (Phe, F)
n = 10 (4.41%)
Tyrosine (Tyr, Y)
n = 9 (3.96%)
Tryptophan (Trp, W)
n = 4 (1.76%)
Aspartic acid (Asp, D)
n = 10 (4.41%)
Glutamic acid (Glu, E)
n = 11 (4.85%)
Asparagine (Asn, N)
n = 8 (3.52%)
Glutamine (Gln, Q)
n = 7 (3.08%)
Histidine (His, H)
n = 6 (2.64%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 6 (2.64%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
8 13 9 2 5 14 3 7 7 0 4 4 3 2 3 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 1 3 7 3 0 1 3 6 0 4 3 8 1 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
5 10 2 4 2 4 0 0 3 2 7 0 1 4 4 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 9 2 1 9 4 0 2 1 3 0 0 0 1 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
57 59 68 44
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 61 56 86
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 75 92 49
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 18 (6.92%)
Alanine (Ala, A)
n = 12 (4.62%)
Serine (Ser, S)
n = 19 (7.31%)
Threonine (Thr, T)
n = 29 (11.15%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 13 (5.0%)
Leucine (Leu, L)
n = 35 (13.46%)
Isoleucine (Ile, I)
n = 17 (6.54%)
Methionine (Met, M)
n = 8 (3.08%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 23 (8.85%)
Tyrosine (Tyr, Y)
n = 12 (4.62%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 4 (1.54%)
Glutamic acid (Glu, E)
n = 6 (2.31%)
Asparagine (Asn, N)
n = 6 (2.31%)
Glutamine (Gln, Q)
n = 8 (3.08%)
Histidine (His, H)
n = 17 (6.54%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 13 6 3 8 17 3 4 7 1 2 6 4 1 5 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 1 1 5 4 3 0 1 10 7 0 0 8 3 1 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 16 0 2 6 5 1 1 4 6 6 1 0 1 5 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
14 5 1 2 2 3 0 1 1 2 1 0 0 0 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
53 73 68 67
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
42 67 56 96
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
12 117 93 39
CYTB (size: 1141 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (5.54%)
Alanine (Ala, A)
n = 20 (5.28%)
Serine (Ser, S)
n = 27 (7.12%)
Threonine (Thr, T)
n = 32 (8.44%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 12 (3.17%)
Leucine (Leu, L)
n = 65 (17.15%)
Isoleucine (Ile, I)
n = 39 (10.29%)
Methionine (Met, M)
n = 19 (5.01%)
Proline (Pro, P)
n = 25 (6.6%)
Phenylalanine (Phe, F)
n = 22 (5.8%)
Tyrosine (Tyr, Y)
n = 15 (3.96%)
Tryptophan (Trp, W)
n = 12 (3.17%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 5 (1.32%)
Asparagine (Asn, N)
n = 16 (4.22%)
Glutamine (Gln, Q)
n = 8 (2.11%)
Histidine (His, H)
n = 10 (2.64%)
Lysine (Lys, K)
n = 10 (2.64%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 29 15 10 18 29 3 5 8 0 1 5 5 1 4 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 3 1 9 10 0 4 9 6 2 2 10 13 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 13 1 0 13 8 2 0 4 3 12 2 0 2 14 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 5 0 3 8 8 2 1 3 4 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
69 111 120 80
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
48 100 75 157
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 175 139 49
ND1 (size: 955 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.79%)
Alanine (Ala, A)
n = 29 (9.15%)
Serine (Ser, S)
n = 20 (6.31%)
Threonine (Thr, T)
n = 33 (10.41%)
Cysteine (Cys, C)
n = 2 (0.63%)
Valine (Val, V)
n = 9 (2.84%)
Leucine (Leu, L)
n = 60 (18.93%)
Isoleucine (Ile, I)
n = 22 (6.94%)
Methionine (Met, M)
n = 18 (5.68%)
Proline (Pro, P)
n = 20 (6.31%)
Phenylalanine (Phe, F)
n = 22 (6.94%)
Tyrosine (Tyr, Y)
n = 8 (2.52%)
Tryptophan (Trp, W)
n = 10 (3.15%)
Aspartic acid (Asp, D)
n = 3 (0.95%)
Glutamic acid (Glu, E)
n = 11 (3.47%)
Asparagine (Asn, N)
n = 14 (4.42%)
Glutamine (Gln, Q)
n = 6 (1.89%)
Histidine (His, H)
n = 5 (1.58%)
Lysine (Lys, K)
n = 7 (2.21%)
Arginine (Arg, R)
n = 7 (2.21%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
10 12 14 4 19 31 1 4 6 0 1 4 4 0 4 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 1 1 2 17 10 0 2 5 4 1 2 14 4 0 5
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 16 1 2 5 10 0 0 3 3 5 0 1 5 9 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
5 9 2 2 1 7 0 0 1 5 1 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
64 93 97 64
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 99 54 131
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
11 130 134 43
ND2 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 15 (4.34%)
Serine (Ser, S)
n = 28 (8.09%)
Threonine (Thr, T)
n = 52 (15.03%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 4 (1.16%)
Leucine (Leu, L)
n = 63 (18.21%)
Isoleucine (Ile, I)
n = 37 (10.69%)
Methionine (Met, M)
n = 26 (7.51%)
Proline (Pro, P)
n = 21 (6.07%)
Phenylalanine (Phe, F)
n = 11 (3.18%)
Tyrosine (Tyr, Y)
n = 11 (3.18%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 18 (5.2%)
Glutamine (Gln, Q)
n = 10 (2.89%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 10 (2.89%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 25 22 8 16 31 2 4 9 1 1 1 0 2 3 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 1 8 6 0 4 4 5 1 2 10 9 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 26 2 5 11 7 0 1 4 2 9 0 2 1 17 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 5 0 0 0 10 0 0 4 0 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
38 99 148 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 111 61 141
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 142 144 47
ND3 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 15 (4.34%)
Serine (Ser, S)
n = 28 (8.09%)
Threonine (Thr, T)
n = 52 (15.03%)
Cysteine (Cys, C)
n = 1 (0.29%)
Valine (Val, V)
n = 4 (1.16%)
Leucine (Leu, L)
n = 63 (18.21%)
Isoleucine (Ile, I)
n = 37 (10.69%)
Methionine (Met, M)
n = 26 (7.51%)
Proline (Pro, P)
n = 21 (6.07%)
Phenylalanine (Phe, F)
n = 11 (3.18%)
Tyrosine (Tyr, Y)
n = 11 (3.18%)
Tryptophan (Trp, W)
n = 10 (2.89%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 5 (1.45%)
Asparagine (Asn, N)
n = 18 (5.2%)
Glutamine (Gln, Q)
n = 10 (2.89%)
Histidine (His, H)
n = 7 (2.02%)
Lysine (Lys, K)
n = 10 (2.89%)
Arginine (Arg, R)
n = 4 (1.16%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
12 25 22 8 16 31 2 4 9 1 1 1 0 2 3 8
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 0 1 1 8 6 0 4 4 5 1 2 10 9 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 26 2 5 11 7 0 1 4 2 9 0 2 1 17 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 5 0 0 0 10 0 0 4 0 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
38 99 148 62
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
34 111 61 141
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
14 142 144 47
ND4 (size: 1378 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 16 (3.49%)
Alanine (Ala, A)
n = 26 (5.68%)
Serine (Ser, S)
n = 34 (7.42%)
Threonine (Thr, T)
n = 55 (12.01%)
Cysteine (Cys, C)
n = 4 (0.87%)
Valine (Val, V)
n = 7 (1.53%)
Leucine (Leu, L)
n = 90 (19.65%)
Isoleucine (Ile, I)
n = 39 (8.52%)
Methionine (Met, M)
n = 35 (7.64%)
Proline (Pro, P)
n = 24 (5.24%)
Phenylalanine (Phe, F)
n = 22 (4.8%)
Tyrosine (Tyr, Y)
n = 15 (3.28%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 8 (1.75%)
Asparagine (Asn, N)
n = 25 (5.46%)
Glutamine (Gln, Q)
n = 11 (2.4%)
Histidine (His, H)
n = 14 (3.06%)
Lysine (Lys, K)
n = 12 (2.62%)
Arginine (Arg, R)
n = 7 (1.53%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 20 28 12 26 36 6 9 10 1 2 0 5 0 8 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 0 4 5 10 9 2 1 9 5 1 1 19 4 0 9
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
18 28 0 8 10 7 0 1 8 5 10 2 1 7 18 4
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
10 8 0 1 2 11 1 1 2 4 0 0 0 0 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
60 136 175 88
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
48 130 88 193
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
21 180 174 84
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 9 (9.18%)
Serine (Ser, S)
n = 7 (7.14%)
Threonine (Thr, T)
n = 8 (8.16%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 4 (4.08%)
Leucine (Leu, L)
n = 21 (21.43%)
Isoleucine (Ile, I)
n = 10 (10.2%)
Methionine (Met, M)
n = 8 (8.16%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 4 (4.08%)
Tyrosine (Tyr, Y)
n = 4 (4.08%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 6 (6.12%)
Glutamine (Gln, Q)
n = 1 (1.02%)
Histidine (His, H)
n = 3 (3.06%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
3 7 7 5 3 8 1 2 1 0 1 0 3 0 1 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 3 1 6 2 0 1 1 2 0 0 2 0 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 4 0 1 1 4 1 0 0 1 3 0 2 2 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 2 0 1 0 0 0 0 1 0 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
20 24 32 23
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
8 26 18 47
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
5 40 36 18
ND5 (size: 1806 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 25 (4.16%)
Alanine (Ala, A)
n = 44 (7.32%)
Serine (Ser, S)
n = 44 (7.32%)
Threonine (Thr, T)
n = 64 (10.65%)
Cysteine (Cys, C)
n = 6 (1.0%)
Valine (Val, V)
n = 10 (1.66%)
Leucine (Leu, L)
n = 96 (15.97%)
Isoleucine (Ile, I)
n = 55 (9.15%)
Methionine (Met, M)
n = 41 (6.82%)
Proline (Pro, P)
n = 31 (5.16%)
Phenylalanine (Phe, F)
n = 37 (6.16%)
Tyrosine (Tyr, Y)
n = 17 (2.83%)
Tryptophan (Trp, W)
n = 13 (2.16%)
Aspartic acid (Asp, D)
n = 13 (2.16%)
Glutamic acid (Glu, E)
n = 9 (1.5%)
Asparagine (Asn, N)
n = 34 (5.66%)
Glutamine (Gln, Q)
n = 21 (3.49%)
Histidine (His, H)
n = 11 (1.83%)
Lysine (Lys, K)
n = 22 (3.66%)
Arginine (Arg, R)
n = 8 (1.33%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
23 32 38 13 29 41 4 9 21 0 2 2 5 1 13 24
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 1 5 7 24 13 0 1 14 9 1 3 15 12 1 13
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
25 24 2 5 13 15 1 2 8 5 12 1 0 6 28 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 8 1 5 8 22 0 3 3 2 0 0 0 1 0 12
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
101 158 226 117
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
62 173 128 239
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 251 232 104
ND6 (size: 528 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 28 (16.0%)
Alanine (Ala, A)
n = 9 (5.14%)
Serine (Ser, S)
n = 12 (6.86%)
Threonine (Thr, T)
n = 6 (3.43%)
Cysteine (Cys, C)
n = 2 (1.14%)
Valine (Val, V)
n = 29 (16.57%)
Leucine (Leu, L)
n = 22 (12.57%)
Isoleucine (Ile, I)
n = 11 (6.29%)
Methionine (Met, M)
n = 11 (6.29%)
Proline (Pro, P)
n = 3 (1.71%)
Phenylalanine (Phe, F)
n = 9 (5.14%)
Tyrosine (Tyr, Y)
n = 9 (5.14%)
Tryptophan (Trp, W)
n = 5 (2.86%)
Aspartic acid (Asp, D)
n = 5 (2.86%)
Glutamic acid (Glu, E)
n = 9 (5.14%)
Asparagine (Asn, N)
n = 1 (0.57%)
Glutamine (Gln, Q)
n = 0 (0%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.57%)
Arginine (Arg, R)
n = 3 (1.71%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 0 2 1 0 1 2 13 0 0 14 1 5 9 9 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
9 2 0 3 1 2 3 14 1 2 11 2 1 0 0 2
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 3 1 4 0 1 1 6 0 8 1 3 5 1 0 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 2 7 5 0 0 1 1 0 1 1 0 1 0 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
80 10 37 49
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
45 24 25 82
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
54 5 34 83
Total protein-coding genes (size: 11394 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 203 (5.35%)
Alanine (Ala, A)
n = 246 (6.48%)
Serine (Ser, S)
n = 257 (6.77%)
Threonine (Thr, T)
n = 385 (10.14%)
Cysteine (Cys, C)
n = 29 (0.76%)
Valine (Val, V)
n = 143 (3.77%)
Leucine (Leu, L)
n = 628 (16.55%)
Isoleucine (Ile, I)
n = 330 (8.7%)
Methionine (Met, M)
n = 230 (6.06%)
Proline (Pro, P)
n = 215 (5.67%)
Phenylalanine (Phe, F)
n = 219 (5.77%)
Tyrosine (Tyr, Y)
n = 128 (3.37%)
Tryptophan (Trp, W)
n = 103 (2.71%)
Aspartic acid (Asp, D)
n = 68 (1.79%)
Glutamic acid (Glu, E)
n = 83 (2.19%)
Asparagine (Asn, N)
n = 169 (4.45%)
Glutamine (Gln, Q)
n = 99 (2.61%)
Histidine (His, H)
n = 99 (2.61%)
Lysine (Lys, K)
n = 92 (2.42%)
Arginine (Arg, R)
n = 63 (1.66%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
135 195 180 76 143 277 36 80 92 7 37 31 54 21 77 142
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
50 8 21 43 119 78 6 37 78 64 24 26 117 69 3 68
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
134 171 12 41 78 73 10 12 43 48 80 13 16 41 128 23
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
76 70 13 26 42 87 5 11 22 27 3 0 1 6 0 90
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
743 1008 1262 783
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
454 1048 744 1550
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
220 1449 1418 709 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​M​a​c​a​c​a​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ n​i​g​r​a​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.