Viewing data for Nannospalax ehrenbergi


Scientific name Nannospalax ehrenbergi
Common name Palestine mole rat
Maximum lifespan 20.20 years (Nannospalax ehrenbergi@AnAge)

Total mtDNA (size: 16408 bases) GC AT G C A T
Base content (bases) 6363 10045 4240 2123 4382 5663
Base content per 1 kb (bases) 388 612 258 129 267 345
Base content (%) 38.8% 61.2%
Total protein-coding genes (size: 11333 bases) GC AT G C A T
Base content (bases) 4464 6869 3138 1326 3053 3816
Base content per 1 kb (bases) 394 606 277 117 269 337
Base content (%) 39.4% 60.6%
D-loop (size: 980 bases) GC AT G C A T
Base content (bases) 343 637 216 127 319 318
Base content per 1 kb (bases) 350 650 220 130 326 324
Base content (%) 35.0% 65.0%
Total tRNA-coding genes (size: 1486 bases) GC AT G C A T
Base content (bases) 553 933 327 226 399 534
Base content per 1 kb (bases) 372 628 220 152 269 359
Base content (%) 37.2% 62.8%
Total rRNA-coding genes (size: 2533 bases) GC AT G C A T
Base content (bases) 971 1562 538 433 595 967
Base content per 1 kb (bases) 383 617 212 171 235 382
Base content (%) 38.3% 61.7%
12S rRNA gene (size: 957 bases) GC AT G C A T
Base content (bases) 374 583 204 170 223 360
Base content per 1 kb (bases) 391 609 213 178 233 376
Base content (%) 39.1% 60.9%
16S rRNA gene (size: 1576 bases) GC AT G C A T
Base content (bases) 597 979 334 263 372 607
Base content per 1 kb (bases) 379 621 212 167 236 385
Base content (%) 37.9% 62.1%

ATP6 (size: 681 bases) GC AT G C A T
Base content (bases) 280 401 207 73 172 229
Base content per 1 kb (bases) 411 589 304 107 253 336
Base content (%) 41.1% 58.9%
ATP8 (size: 204 bases) GC AT G C A T
Base content (bases) 71 133 57 14 53 80
Base content per 1 kb (bases) 348 652 279 69 260 392
Base content (%) 34.8% 65.2%
COX1 (size: 1545 bases) GC AT G C A T
Base content (bases) 637 908 373 264 448 460
Base content per 1 kb (bases) 412 588 241 171 290 298
Base content (%) 41.2% 58.8%
COX2 (size: 684 bases) GC AT G C A T
Base content (bases) 277 407 176 101 176 231
Base content per 1 kb (bases) 405 595 257 148 257 338
Base content (%) 40.5% 59.5%
COX3 (size: 784 bases) GC AT G C A T
Base content (bases) 338 446 217 121 219 227
Base content per 1 kb (bases) 431 569 277 154 279 290
Base content (%) 43.1% 56.9%
CYTB (size: 1140 bases) GC AT G C A T
Base content (bases) 463 677 324 139 306 371
Base content per 1 kb (bases) 406 594 284 122 268 325
Base content (%) 40.6% 59.4%
ND1 (size: 946 bases) GC AT G C A T
Base content (bases) 389 557 283 106 247 310
Base content per 1 kb (bases) 411 589 299 112 261 328
Base content (%) 41.1% 58.9%
ND2 (size: 1042 bases) GC AT G C A T
Base content (bases) 395 647 304 91 284 363
Base content per 1 kb (bases) 379 621 292 87 273 348
Base content (%) 37.9% 62.1%
ND3 (size: 348 bases) GC AT G C A T
Base content (bases) 140 208 97 43 96 112
Base content per 1 kb (bases) 402 598 279 124 276 322
Base content (%) 40.2% 59.8%
ND4 (size: 1377 bases) GC AT G C A T
Base content (bases) 507 870 365 142 385 485
Base content per 1 kb (bases) 368 632 265 103 280 352
Base content (%) 36.8% 63.2%
ND4L (size: 297 bases) GC AT G C A T
Base content (bases) 106 191 75 31 97 94
Base content per 1 kb (bases) 357 643 253 104 327 316
Base content (%) 35.7% 64.3%
ND5 (size: 1827 bases) GC AT G C A T
Base content (bases) 690 1137 515 175 490 647
Base content per 1 kb (bases) 378 622 282 96 268 354
Base content (%) 37.8% 62.2%
ND6 (size: 525 bases) GC AT G C A T
Base content (bases) 197 328 164 33 100 228
Base content per 1 kb (bases) 375 625 312 63 190 434
Base content (%) 37.5% 62.5%

ATP6 (size: 681 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 11 (4.87%)
Alanine (Ala, A)
n = 17 (7.52%)
Serine (Ser, S)
n = 12 (5.31%)
Threonine (Thr, T)
n = 30 (13.27%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 9 (3.98%)
Leucine (Leu, L)
n = 39 (17.26%)
Isoleucine (Ile, I)
n = 27 (11.95%)
Methionine (Met, M)
n = 13 (5.75%)
Proline (Pro, P)
n = 13 (5.75%)
Phenylalanine (Phe, F)
n = 12 (5.31%)
Tyrosine (Tyr, Y)
n = 2 (0.88%)
Tryptophan (Trp, W)
n = 3 (1.33%)
Aspartic acid (Asp, D)
n = 1 (0.44%)
Glutamic acid (Glu, E)
n = 3 (1.33%)
Asparagine (Asn, N)
n = 9 (3.98%)
Glutamine (Gln, Q)
n = 8 (3.54%)
Histidine (His, H)
n = 6 (2.65%)
Lysine (Lys, K)
n = 7 (3.1%)
Arginine (Arg, R)
n = 4 (1.77%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
13 14 11 3 7 20 3 6 8 0 2 0 6 1 5 7
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 0 0 6 7 4 0 1 5 5 0 2 4 7 0 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
10 17 2 1 2 5 0 0 4 0 2 1 0 1 8 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 3 0 0 1 6 1 2 1 1 0 0 0 1 0 2
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
41 64 90 32
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
22 68 37 100
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 75 102 40
ATP8 (size: 204 bases)
Amino acid sequence: MPQLDTSTWSTVIMASLVTLFIILQLKLSLFSLTPAPSLKQTKLNKTHNPWDKKWTKIYLPLSLPLH*
Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 2 (2.99%)
Serine (Ser, S)
n = 7 (10.45%)
Threonine (Thr, T)
n = 8 (11.94%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 2 (2.99%)
Leucine (Leu, L)
n = 14 (20.9%)
Isoleucine (Ile, I)
n = 4 (5.97%)
Methionine (Met, M)
n = 2 (2.99%)
Proline (Pro, P)
n = 6 (8.96%)
Phenylalanine (Phe, F)
n = 2 (2.99%)
Tyrosine (Tyr, Y)
n = 1 (1.49%)
Tryptophan (Trp, W)
n = 3 (4.48%)
Aspartic acid (Asp, D)
n = 2 (2.99%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 2 (2.99%)
Glutamine (Gln, Q)
n = 3 (4.48%)
Histidine (His, H)
n = 2 (2.99%)
Lysine (Lys, K)
n = 7 (10.45%)
Arginine (Arg, R)
n = 0 (0%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
2 2 1 3 0 6 0 4 3 0 0 0 2 0 2 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 0 0 0 2 0 0 0 0 0 2 2 2 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 4 1 0 2 3 1 0 1 1 0 0 1 0 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
2 0 0 1 1 7 0 0 0 0 0 0 0 1 0 3
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
6 20 24 18
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
4 22 18 24
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 15 38 11
COX1 (size: 1545 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 46 (8.95%)
Alanine (Ala, A)
n = 42 (8.17%)
Serine (Ser, S)
n = 32 (6.23%)
Threonine (Thr, T)
n = 36 (7.0%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 41 (7.98%)
Leucine (Leu, L)
n = 57 (11.09%)
Isoleucine (Ile, I)
n = 39 (7.59%)
Methionine (Met, M)
n = 30 (5.84%)
Proline (Pro, P)
n = 28 (5.45%)
Phenylalanine (Phe, F)
n = 43 (8.37%)
Tyrosine (Tyr, Y)
n = 18 (3.5%)
Tryptophan (Trp, W)
n = 17 (3.31%)
Aspartic acid (Asp, D)
n = 14 (2.72%)
Glutamic acid (Glu, E)
n = 12 (2.33%)
Asparagine (Asn, N)
n = 16 (3.11%)
Glutamine (Gln, Q)
n = 6 (1.17%)
Histidine (His, H)
n = 18 (3.5%)
Lysine (Lys, K)
n = 9 (1.75%)
Arginine (Arg, R)
n = 9 (1.75%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
19 20 23 10 10 22 2 13 6 0 8 6 24 3 15 28
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
7 1 0 12 10 19 1 4 5 25 12 4 5 16 3 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 23 1 1 7 20 0 3 1 10 8 0 0 7 9 9
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
9 11 1 8 6 7 2 3 1 5 0 0 0 1 0 17
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
155 105 134 121
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
77 134 94 210
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
32 134 232 117
COX2 (size: 684 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.52%)
Alanine (Ala, A)
n = 11 (4.85%)
Serine (Ser, S)
n = 17 (7.49%)
Threonine (Thr, T)
n = 18 (7.93%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 15 (6.61%)
Leucine (Leu, L)
n = 30 (13.22%)
Isoleucine (Ile, I)
n = 18 (7.93%)
Methionine (Met, M)
n = 15 (6.61%)
Proline (Pro, P)
n = 14 (6.17%)
Phenylalanine (Phe, F)
n = 6 (2.64%)
Tyrosine (Tyr, Y)
n = 10 (4.41%)
Tryptophan (Trp, W)
n = 5 (2.2%)
Aspartic acid (Asp, D)
n = 10 (4.41%)
Glutamic acid (Glu, E)
n = 15 (6.61%)
Asparagine (Asn, N)
n = 9 (3.96%)
Glutamine (Gln, Q)
n = 6 (2.64%)
Histidine (His, H)
n = 7 (3.08%)
Lysine (Lys, K)
n = 4 (1.76%)
Arginine (Arg, R)
n = 7 (3.08%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
11 7 11 6 3 15 2 3 4 2 0 4 9 2 1 5
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
4 2 0 6 5 0 0 2 1 4 1 2 1 9 2 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
2 12 1 2 4 8 0 1 2 4 6 0 1 4 5 1
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
6 14 1 5 5 3 1 0 3 4 0 0 0 1 0 5
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
59 60 67 42
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
25 57 62 84
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
17 59 102 50
COX3 (size: 784 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 21 (8.08%)
Alanine (Ala, A)
n = 17 (6.54%)
Serine (Ser, S)
n = 18 (6.92%)
Threonine (Thr, T)
n = 21 (8.08%)
Cysteine (Cys, C)
n = 2 (0.77%)
Valine (Val, V)
n = 14 (5.38%)
Leucine (Leu, L)
n = 33 (12.69%)
Isoleucine (Ile, I)
n = 19 (7.31%)
Methionine (Met, M)
n = 7 (2.69%)
Proline (Pro, P)
n = 13 (5.0%)
Phenylalanine (Phe, F)
n = 25 (9.62%)
Tyrosine (Tyr, Y)
n = 9 (3.46%)
Tryptophan (Trp, W)
n = 12 (4.62%)
Aspartic acid (Asp, D)
n = 3 (1.15%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 8 (3.08%)
Glutamine (Gln, Q)
n = 7 (2.69%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 3 (1.15%)
Arginine (Arg, R)
n = 5 (1.92%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
4 15 4 8 5 16 0 4 6 1 0 1 12 1 12 13
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
3 0 2 2 5 10 0 5 5 7 4 1 0 12 0 3
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
7 11 0 4 2 9 0 0 3 2 7 3 0 4 4 5
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
11 7 1 2 1 1 2 1 0 4 0 0 0 0 0 9
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
63 70 61 67
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
43 66 54 98
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 81 112 53
CYTB (size: 1140 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (6.86%)
Alanine (Ala, A)
n = 21 (5.54%)
Serine (Ser, S)
n = 25 (6.6%)
Threonine (Thr, T)
n = 30 (7.92%)
Cysteine (Cys, C)
n = 3 (0.79%)
Valine (Val, V)
n = 18 (4.75%)
Leucine (Leu, L)
n = 57 (15.04%)
Isoleucine (Ile, I)
n = 43 (11.35%)
Methionine (Met, M)
n = 14 (3.69%)
Proline (Pro, P)
n = 22 (5.8%)
Phenylalanine (Phe, F)
n = 26 (6.86%)
Tyrosine (Tyr, Y)
n = 14 (3.69%)
Tryptophan (Trp, W)
n = 11 (2.9%)
Aspartic acid (Asp, D)
n = 11 (2.9%)
Glutamic acid (Glu, E)
n = 6 (1.58%)
Asparagine (Asn, N)
n = 15 (3.96%)
Glutamine (Gln, Q)
n = 6 (1.58%)
Histidine (His, H)
n = 14 (3.69%)
Lysine (Lys, K)
n = 9 (2.37%)
Arginine (Arg, R)
n = 8 (2.11%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
16 27 13 4 5 36 0 12 6 0 4 2 11 1 8 18
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 1 2 4 10 6 1 5 5 14 2 0 4 18 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
11 18 1 2 6 14 0 1 2 4 10 0 0 6 9 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 6 0 2 9 9 0 0 2 6 0 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
82 95 114 89
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
51 95 76 158
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
6 134 181 59
ND1 (size: 946 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 12 (3.82%)
Alanine (Ala, A)
n = 27 (8.6%)
Serine (Ser, S)
n = 24 (7.64%)
Threonine (Thr, T)
n = 26 (8.28%)
Cysteine (Cys, C)
n = 1 (0.32%)
Valine (Val, V)
n = 12 (3.82%)
Leucine (Leu, L)
n = 61 (19.43%)
Isoleucine (Ile, I)
n = 22 (7.01%)
Methionine (Met, M)
n = 16 (5.1%)
Proline (Pro, P)
n = 22 (7.01%)
Phenylalanine (Phe, F)
n = 21 (6.69%)
Tyrosine (Tyr, Y)
n = 12 (3.82%)
Tryptophan (Trp, W)
n = 9 (2.87%)
Aspartic acid (Asp, D)
n = 3 (0.96%)
Glutamic acid (Glu, E)
n = 11 (3.5%)
Asparagine (Asn, N)
n = 13 (4.14%)
Glutamine (Gln, Q)
n = 5 (1.59%)
Histidine (His, H)
n = 3 (0.96%)
Lysine (Lys, K)
n = 8 (2.55%)
Arginine (Arg, R)
n = 7 (2.23%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
9 13 15 4 5 38 2 11 5 0 1 0 11 0 7 14
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 1 3 14 9 1 5 2 5 0 2 3 16 1 1
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
13 12 0 1 6 15 0 0 2 1 11 2 1 3 10 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
3 11 0 0 3 8 0 0 0 5 2 0 0 0 0 7
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
65 86 87 77
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 97 55 132
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
10 100 168 37
ND2 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 21 (6.07%)
Serine (Ser, S)
n = 31 (8.96%)
Threonine (Thr, T)
n = 30 (8.67%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 13 (3.76%)
Leucine (Leu, L)
n = 59 (17.05%)
Isoleucine (Ile, I)
n = 40 (11.56%)
Methionine (Met, M)
n = 26 (7.51%)
Proline (Pro, P)
n = 17 (4.91%)
Phenylalanine (Phe, F)
n = 16 (4.62%)
Tyrosine (Tyr, Y)
n = 14 (4.05%)
Tryptophan (Trp, W)
n = 8 (2.31%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 19 (5.49%)
Glutamine (Gln, Q)
n = 8 (2.31%)
Histidine (His, H)
n = 10 (2.89%)
Lysine (Lys, K)
n = 11 (3.18%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 26 25 5 3 45 2 4 8 0 2 3 8 0 4 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 2 6 10 4 1 2 5 6 1 1 4 12 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 17 0 4 8 13 2 1 3 5 9 0 0 5 14 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 4 0 0 1 11 0 2 0 1 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
53 93 130 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 95 67 154
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 116 166 58
ND3 (size: 1042 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.05%)
Alanine (Ala, A)
n = 21 (6.07%)
Serine (Ser, S)
n = 31 (8.96%)
Threonine (Thr, T)
n = 30 (8.67%)
Cysteine (Cys, C)
n = 2 (0.58%)
Valine (Val, V)
n = 13 (3.76%)
Leucine (Leu, L)
n = 59 (17.05%)
Isoleucine (Ile, I)
n = 40 (11.56%)
Methionine (Met, M)
n = 26 (7.51%)
Proline (Pro, P)
n = 17 (4.91%)
Phenylalanine (Phe, F)
n = 16 (4.62%)
Tyrosine (Tyr, Y)
n = 14 (4.05%)
Tryptophan (Trp, W)
n = 8 (2.31%)
Aspartic acid (Asp, D)
n = 1 (0.29%)
Glutamic acid (Glu, E)
n = 4 (1.16%)
Asparagine (Asn, N)
n = 19 (5.49%)
Glutamine (Gln, Q)
n = 8 (2.31%)
Histidine (His, H)
n = 10 (2.89%)
Lysine (Lys, K)
n = 11 (3.18%)
Arginine (Arg, R)
n = 3 (0.87%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
14 26 25 5 3 45 2 4 8 0 2 3 8 0 4 12
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 2 6 10 4 1 2 5 6 1 1 4 12 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
9 17 0 4 8 13 2 1 3 5 9 0 0 5 14 3
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
7 4 0 0 1 11 0 2 0 1 0 0 0 0 0 8
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
53 93 130 71
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
31 95 67 154
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
7 116 166 58
ND4 (size: 1377 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 19 (4.15%)
Alanine (Ala, A)
n = 25 (5.46%)
Serine (Ser, S)
n = 44 (9.61%)
Threonine (Thr, T)
n = 42 (9.17%)
Cysteine (Cys, C)
n = 3 (0.66%)
Valine (Val, V)
n = 16 (3.49%)
Leucine (Leu, L)
n = 85 (18.56%)
Isoleucine (Ile, I)
n = 43 (9.39%)
Methionine (Met, M)
n = 32 (6.99%)
Proline (Pro, P)
n = 21 (4.59%)
Phenylalanine (Phe, F)
n = 21 (4.59%)
Tyrosine (Tyr, Y)
n = 14 (3.06%)
Tryptophan (Trp, W)
n = 12 (2.62%)
Aspartic acid (Asp, D)
n = 4 (0.87%)
Glutamic acid (Glu, E)
n = 9 (1.97%)
Asparagine (Asn, N)
n = 23 (5.02%)
Glutamine (Gln, Q)
n = 13 (2.84%)
Histidine (His, H)
n = 10 (2.18%)
Lysine (Lys, K)
n = 14 (3.06%)
Arginine (Arg, R)
n = 8 (1.75%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
25 18 30 9 9 48 3 15 12 1 2 0 12 2 10 11
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
2 3 0 7 10 6 2 3 1 13 2 2 5 14 0 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
12 25 1 2 13 18 0 2 9 7 7 2 1 7 16 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
8 9 0 1 3 14 0 2 1 5 0 0 0 1 0 10
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 121 165 100
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
53 121 88 197
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
16 123 232 88
ND4L (size: 297 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 4 (4.08%)
Alanine (Ala, A)
n = 6 (6.12%)
Serine (Ser, S)
n = 8 (8.16%)
Threonine (Thr, T)
n = 9 (9.18%)
Cysteine (Cys, C)
n = 3 (3.06%)
Valine (Val, V)
n = 6 (6.12%)
Leucine (Leu, L)
n = 23 (23.47%)
Isoleucine (Ile, I)
n = 8 (8.16%)
Methionine (Met, M)
n = 7 (7.14%)
Proline (Pro, P)
n = 2 (2.04%)
Phenylalanine (Phe, F)
n = 7 (7.14%)
Tyrosine (Tyr, Y)
n = 2 (2.04%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.02%)
Glutamic acid (Glu, E)
n = 2 (2.04%)
Asparagine (Asn, N)
n = 6 (6.12%)
Glutamine (Gln, Q)
n = 2 (2.04%)
Histidine (His, H)
n = 1 (1.02%)
Lysine (Lys, K)
n = 0 (0%)
Arginine (Arg, R)
n = 1 (1.02%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
5 3 6 2 2 12 2 5 2 0 0 1 5 0 4 3
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
1 0 3 2 2 2 0 2 0 2 0 1 0 1 0 0
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
3 6 0 1 2 5 0 0 0 1 1 0 0 2 4 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
1 1 1 0 1 0 0 0 0 1 0 0 0 1 0 0
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
19 24 30 26
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
8 25 15 51
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
4 26 49 20
ND5 (size: 1827 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (4.28%)
Alanine (Ala, A)
n = 35 (5.76%)
Serine (Ser, S)
n = 54 (8.88%)
Threonine (Thr, T)
n = 68 (11.18%)
Cysteine (Cys, C)
n = 5 (0.82%)
Valine (Val, V)
n = 15 (2.47%)
Leucine (Leu, L)
n = 96 (15.79%)
Isoleucine (Ile, I)
n = 60 (9.87%)
Methionine (Met, M)
n = 34 (5.59%)
Proline (Pro, P)
n = 27 (4.44%)
Phenylalanine (Phe, F)
n = 40 (6.58%)
Tyrosine (Tyr, Y)
n = 13 (2.14%)
Tryptophan (Trp, W)
n = 13 (2.14%)
Aspartic acid (Asp, D)
n = 10 (1.64%)
Glutamic acid (Glu, E)
n = 10 (1.64%)
Asparagine (Asn, N)
n = 43 (7.07%)
Glutamine (Gln, Q)
n = 15 (2.47%)
Histidine (His, H)
n = 14 (2.3%)
Lysine (Lys, K)
n = 22 (3.62%)
Arginine (Arg, R)
n = 8 (1.32%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
26 34 34 10 13 53 1 18 14 1 4 1 8 2 13 27
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
0 1 4 10 14 10 1 3 6 14 3 6 3 18 0 6
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
28 33 1 5 5 31 1 3 9 3 10 2 1 14 29 2
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
12 8 2 6 4 22 0 0 3 5 0 0 0 1 0 11
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
96 141 239 133
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
64 172 128 245
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
15 202 280 112
ND6 (size: 525 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 26 (14.94%)
Alanine (Ala, A)
n = 10 (5.75%)
Serine (Ser, S)
n = 11 (6.32%)
Threonine (Thr, T)
n = 4 (2.3%)
Cysteine (Cys, C)
n = 5 (2.87%)
Valine (Val, V)
n = 22 (12.64%)
Leucine (Leu, L)
n = 21 (12.07%)
Isoleucine (Ile, I)
n = 15 (8.62%)
Methionine (Met, M)
n = 10 (5.75%)
Proline (Pro, P)
n = 3 (1.72%)
Phenylalanine (Phe, F)
n = 11 (6.32%)
Tyrosine (Tyr, Y)
n = 6 (3.45%)
Tryptophan (Trp, W)
n = 6 (3.45%)
Aspartic acid (Asp, D)
n = 3 (1.72%)
Glutamic acid (Glu, E)
n = 12 (6.9%)
Asparagine (Asn, N)
n = 6 (3.45%)
Glutamine (Gln, Q)
n = 1 (0.57%)
Histidine (His, H)
n = 0 (0%)
Lysine (Lys, K)
n = 1 (0.57%)
Arginine (Arg, R)
n = 1 (0.57%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
15 0 4 2 0 0 0 7 0 1 12 0 6 4 11 0
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
6 4 1 7 0 0 3 17 0 2 7 2 0 0 1 4
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
0 0 0 4 0 1 1 5 0 6 0 2 12 4 2 0
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
0 3 9 3 0 1 0 0 0 1 0 0 1 0 0 4
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
73 7 42 53
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
44 23 29 79
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
47 3 29 96
Total protein-coding genes (size: 11400 bases)
Amino acid sequence:
Amino acid frequencies:
Glycine (Gly, G)
n = 220 (5.79%)
Alanine (Ala, A)
n = 241 (6.35%)
Serine (Ser, S)
n = 290 (7.64%)
Threonine (Thr, T)
n = 329 (8.66%)
Cysteine (Cys, C)
n = 28 (0.74%)
Valine (Val, V)
n = 188 (4.95%)
Leucine (Leu, L)
n = 599 (15.77%)
Isoleucine (Ile, I)
n = 347 (9.14%)
Methionine (Met, M)
n = 213 (5.61%)
Proline (Pro, P)
n = 194 (5.11%)
Phenylalanine (Phe, F)
n = 238 (6.27%)
Tyrosine (Tyr, Y)
n = 119 (3.13%)
Tryptophan (Trp, W)
n = 103 (2.71%)
Aspartic acid (Asp, D)
n = 66 (1.74%)
Glutamic acid (Glu, E)
n = 97 (2.55%)
Asparagine (Asn, N)
n = 174 (4.58%)
Glutamine (Gln, Q)
n = 82 (2.16%)
Histidine (His, H)
n = 101 (2.66%)
Lysine (Lys, K)
n = 98 (2.58%)
Arginine (Arg, R)
n = 62 (1.63%)
Codon statistics:
AUU AUC AUA CUU CUC CUA CUG UUA CAA CAG GUU GUC GUA GUG UUU UUC
161 186 184 70 67 324 17 104 76 6 36 19 117 16 98 140
AUG UGU UGC GCU GCC GCA GCG GGU GGC GGA GGG CCU CCC CCA CCG ACU
29 12 16 67 90 74 10 49 36 102 33 25 33 129 7 29
ACC ACA ACG UCU UCC UCA UCG AGU AGC UAU UAC UGG UUG AAU AAC CAU
110 182 8 29 59 143 5 16 38 45 74 12 17 57 117 27
CAC GAA GAG GAU GAC AAA AAG CGU CGC CGA CGG AGA AGG UAA UAG UGA
74 82 15 28 38 92 6 10 12 38 2 0 1 9 0 91
Codons with 1st base G Codons with 1st base C Codons with 1st base A Codons with 1st base U
812 917 1216 854
Codons with 2nd base G Codons with 2nd base C Codons with 2nd base A Codons with 2nd base U
468 1000 746 1585
Codons with 3rd base G Codons with 3rd base C Codons with 3rd base A Codons with 3rd base U
184 1109 1747 759 

Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​N​a​n​n​o​s​p​a​l​a​x​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ e​h​r​e​n​b​e​r​g​i​"​[​O​r​g​a​n​i​s​m​]​)​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​
F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.