Viewing data for Pogona vitticeps
| Scientific name | Pogona vitticeps |
| Common name | Central bearded dragon |
| Maximum lifespan | 12.00 years (Pogona vitticeps@AnAge) |
| Total mtDNA (size: 16751 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 7210 | 9541 | 5004 | 2206 | 4018 | 5523 |
| Base content per 1 kb (bases) | 430 | 570 | 299 | 132 | 240 | 330 |
| Base content (%) | 43.0% | 57.0% | ||||
| Total protein-coding genes (size: 11281 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 4857 | 6424 | 3527 | 1330 | 2709 | 3715 |
| Base content per 1 kb (bases) | 431 | 569 | 313 | 118 | 240 | 329 |
| Base content (%) | 43.1% | 56.9% | ||||
D-loop:
No data available for this section.
| Total tRNA-coding genes (size: 1477 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 628 | 849 | 374 | 254 | 369 | 480 |
| Base content per 1 kb (bases) | 425 | 575 | 253 | 172 | 250 | 325 |
| Base content (%) | 42.5% | 57.5% | ||||
| Total rRNA-coding genes (size: 2416 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 1100 | 1316 | 667 | 433 | 457 | 859 |
| Base content per 1 kb (bases) | 455 | 545 | 276 | 179 | 189 | 356 |
| Base content (%) | 45.5% | 54.5% | ||||
| 12S rRNA gene (size: 910 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 467 | 443 | 283 | 184 | 152 | 291 |
| Base content per 1 kb (bases) | 513 | 487 | 311 | 202 | 167 | 320 |
| Base content (%) | 51.3% | 48.7% | ||||
| 16S rRNA gene (size: 1506 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 633 | 873 | 384 | 249 | 305 | 568 |
| Base content per 1 kb (bases) | 420 | 580 | 255 | 165 | 203 | 377 |
| Base content (%) | 42.0% | 58.0% | ||||
| ATP6 (size: 683 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 299 | 384 | 239 | 60 | 165 | 219 |
| Base content per 1 kb (bases) | 438 | 562 | 350 | 88 | 242 | 321 |
| Base content (%) | 43.8% | 56.2% | ||||
| ATP8 (size: 156 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 69 | 87 | 58 | 11 | 26 | 61 |
| Base content per 1 kb (bases) | 442 | 558 | 372 | 71 | 167 | 391 |
| Base content (%) | 44.2% | 55.8% | ||||
| COX1 (size: 1548 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 704 | 844 | 484 | 220 | 382 | 462 |
| Base content per 1 kb (bases) | 455 | 545 | 313 | 142 | 247 | 298 |
| Base content (%) | 45.5% | 54.5% | ||||
| COX2 (size: 688 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 294 | 394 | 208 | 86 | 153 | 241 |
| Base content per 1 kb (bases) | 427 | 573 | 302 | 125 | 222 | 350 |
| Base content (%) | 42.7% | 57.3% | ||||
| COX3 (size: 784 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 333 | 451 | 220 | 113 | 209 | 242 |
| Base content per 1 kb (bases) | 425 | 575 | 281 | 144 | 267 | 309 |
| Base content (%) | 42.5% | 57.5% | ||||
| CYTB (size: 1131 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 493 | 638 | 350 | 143 | 295 | 343 |
| Base content per 1 kb (bases) | 436 | 564 | 309 | 126 | 261 | 303 |
| Base content (%) | 43.6% | 56.4% | ||||
| ND1 (size: 972 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 422 | 550 | 295 | 127 | 230 | 320 |
| Base content per 1 kb (bases) | 434 | 566 | 303 | 131 | 237 | 329 |
| Base content (%) | 43.4% | 56.6% | ||||
| ND2 (size: 1033 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 445 | 588 | 339 | 106 | 236 | 352 |
| Base content per 1 kb (bases) | 431 | 569 | 328 | 103 | 228 | 341 |
| Base content (%) | 43.1% | 56.9% | ||||
| ND3 (size: 343 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 147 | 196 | 113 | 34 | 86 | 110 |
| Base content per 1 kb (bases) | 429 | 571 | 329 | 99 | 251 | 321 |
| Base content (%) | 42.9% | 57.1% | ||||
| ND4 (size: 1369 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 564 | 805 | 413 | 151 | 339 | 466 |
| Base content per 1 kb (bases) | 412 | 588 | 302 | 110 | 248 | 340 |
| Base content (%) | 41.2% | 58.8% | ||||
| ND4L (size: 291 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 109 | 182 | 81 | 28 | 74 | 108 |
| Base content per 1 kb (bases) | 375 | 625 | 278 | 96 | 254 | 371 |
| Base content (%) | 37.5% | 62.5% | ||||
| ND5 (size: 1794 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 769 | 1025 | 564 | 205 | 454 | 571 |
| Base content per 1 kb (bases) | 429 | 571 | 314 | 114 | 253 | 318 |
| Base content (%) | 42.9% | 57.1% | ||||
| ND6 (size: 504 bases) | GC | AT | G | C | A | T |
|---|---|---|---|---|---|---|
| Base content (bases) | 211 | 293 | 163 | 48 | 65 | 228 |
| Base content per 1 kb (bases) | 419 | 581 | 323 | 95 | 129 | 452 |
| Base content (%) | 41.9% | 58.1% | ||||
| ATP6 (size: 683 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
Amino acid frequencies:
Glycine (Gly, G)
n = 7 (3.1%) 
Alanine (Ala, A)
n = 13 (5.75%) 
Serine (Ser, S)
n = 10 (4.42%) 
Threonine (Thr, T)
n = 39 (17.26%) 
Cysteine (Cys, C)
n = 0 (0%) 
Valine (Val, V)
n = 10 (4.42%) 
Leucine (Leu, L)
n = 52 (23.01%) 
Isoleucine (Ile, I)
n = 20 (8.85%) 
Methionine (Met, M)
n = 11 (4.87%) 
Proline (Pro, P)
n = 20 (8.85%) 
Phenylalanine (Phe, F)
n = 8 (3.54%) 
Tyrosine (Tyr, Y)
n = 5 (2.21%) 
Tryptophan (Trp, W)
n = 3 (1.33%) 
Aspartic acid (Asp, D)
n = 0 (0%) 
Glutamic acid (Glu, E)
n = 3 (1.33%) 
Asparagine (Asn, N)
n = 7 (3.1%) 
Glutamine (Gln, Q)
n = 7 (3.1%) 
Histidine (His, H)
n = 3 (1.33%) 
Lysine (Lys, K)
n = 5 (2.21%) 
Arginine (Arg, R)
n = 4 (1.77%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 7 | 13 | 10 | 5 | 11 | 21 | 5 | 9 | 5 | 2 | 4 | 1 | 5 | 0 | 5 | 3 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 0 | 1 | 7 | 5 | 0 | 0 | 1 | 5 | 1 | 1 | 5 | 14 | 0 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 22 | 15 | 0 | 0 | 5 | 3 | 1 | 0 | 1 | 1 | 4 | 0 | 1 | 1 | 6 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 3 | 0 | 0 | 0 | 4 | 1 | 0 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 33 | 76 | 83 | 35 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 15 | 81 | 30 | 101 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 12 | 82 | 105 | 28 | ||||||||||||
| ATP8 (size: 156 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: LPQLNPSPWFYIMVATWATMMLLITKLTATPTHTTPINTNKPPHTKTTWPW* | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 0 (0%)
Alanine (Ala, A)
n = 3 (5.88%)
Serine (Ser, S)
n = 1 (1.96%)
Threonine (Thr, T)
n = 12 (23.53%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 1 (1.96%)
Leucine (Leu, L)
n = 5 (9.8%)
Isoleucine (Ile, I)
n = 3 (5.88%)
Methionine (Met, M)
n = 3 (5.88%)
Proline (Pro, P)
n = 8 (15.69%)
Phenylalanine (Phe, F)
n = 1 (1.96%)
Tyrosine (Tyr, Y)
n = 1 (1.96%)
Tryptophan (Trp, W)
n = 4 (7.84%)
Aspartic acid (Asp, D)
n = 0 (0%)
Glutamic acid (Glu, E)
n = 0 (0%)
Asparagine (Asn, N)
n = 3 (5.88%)
Glutamine (Gln, Q)
n = 1 (1.96%)
Histidine (His, H)
n = 2 (3.92%)
Lysine (Lys, K)
n = 3 (5.88%)
Arginine (Arg, R)
n = 0 (0%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 0 | 3 | 3 | 0 | 0 | 3 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 5 | 0 | 1 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 5 | 6 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 2 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 4 | 15 | 24 | 9 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 4 | 24 | 11 | 13 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 3 | 19 | 26 | 4 | ||||||||||||
| COX1 (size: 1548 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 43 (8.35%)
Alanine (Ala, A)
n = 40 (7.77%)
Serine (Ser, S)
n = 39 (7.57%)
Threonine (Thr, T)
n = 45 (8.74%)
Cysteine (Cys, C)
n = 1 (0.19%)
Valine (Val, V)
n = 27 (5.24%)
Leucine (Leu, L)
n = 59 (11.46%)
Isoleucine (Ile, I)
n = 35 (6.8%)
Methionine (Met, M)
n = 36 (6.99%)
Proline (Pro, P)
n = 32 (6.21%)
Phenylalanine (Phe, F)
n = 40 (7.77%)
Tyrosine (Tyr, Y)
n = 15 (2.91%)
Tryptophan (Trp, W)
n = 17 (3.3%)
Aspartic acid (Asp, D)
n = 14 (2.72%)
Glutamic acid (Glu, E)
n = 6 (1.17%)
Asparagine (Asn, N)
n = 19 (3.69%)
Glutamine (Gln, Q)
n = 8 (1.55%)
Histidine (His, H)
n = 20 (3.88%)
Lysine (Lys, K)
n = 10 (1.94%)
Arginine (Arg, R)
n = 9 (1.75%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 15 | 20 | 32 | 7 | 12 | 34 | 1 | 5 | 8 | 0 | 9 | 8 | 9 | 1 | 10 | 30 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 1 | 5 | 21 | 14 | 0 | 2 | 12 | 26 | 3 | 3 | 9 | 17 | 3 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 24 | 18 | 0 | 4 | 13 | 15 | 1 | 0 | 6 | 5 | 10 | 0 | 0 | 3 | 16 | 5 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 15 | 6 | 0 | 1 | 13 | 10 | 0 | 2 | 1 | 6 | 0 | 1 | 0 | 0 | 0 | 17 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 130 | 123 | 152 | 111 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 77 | 150 | 92 | 197 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 13 | 211 | 218 | 74 | ||||||||||||
| COX2 (size: 688 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 8 (3.51%)
Alanine (Ala, A)
n = 16 (7.02%)
Serine (Ser, S)
n = 21 (9.21%)
Threonine (Thr, T)
n = 24 (10.53%)
Cysteine (Cys, C)
n = 2 (0.88%)
Valine (Val, V)
n = 7 (3.07%)
Leucine (Leu, L)
n = 26 (11.4%)
Isoleucine (Ile, I)
n = 16 (7.02%)
Methionine (Met, M)
n = 17 (7.46%)
Proline (Pro, P)
n = 11 (4.82%)
Phenylalanine (Phe, F)
n = 13 (5.7%)
Tyrosine (Tyr, Y)
n = 8 (3.51%)
Tryptophan (Trp, W)
n = 5 (2.19%)
Aspartic acid (Asp, D)
n = 9 (3.95%)
Glutamic acid (Glu, E)
n = 13 (5.7%)
Asparagine (Asn, N)
n = 8 (3.51%)
Glutamine (Gln, Q)
n = 6 (2.63%)
Histidine (His, H)
n = 8 (3.51%)
Lysine (Lys, K)
n = 5 (2.19%)
Arginine (Arg, R)
n = 6 (2.63%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 7 | 9 | 15 | 1 | 7 | 14 | 2 | 2 | 5 | 1 | 0 | 3 | 3 | 1 | 2 | 11 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 1 | 1 | 1 | 10 | 5 | 0 | 0 | 0 | 7 | 1 | 1 | 1 | 9 | 0 | 4 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 7 | 13 | 0 | 1 | 4 | 13 | 0 | 0 | 3 | 2 | 6 | 0 | 0 | 3 | 5 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 7 | 12 | 1 | 1 | 8 | 4 | 1 | 0 | 2 | 4 | 0 | 0 | 0 | 0 | 0 | 5 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 53 | 55 | 73 | 48 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 24 | 69 | 57 | 79 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 9 | 84 | 111 | 25 | ||||||||||||
| COX3 (size: 784 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 20 (7.69%)
Alanine (Ala, A)
n = 15 (5.77%)
Serine (Ser, S)
n = 13 (5.0%)
Threonine (Thr, T)
n = 32 (12.31%)
Cysteine (Cys, C)
n = 1 (0.38%)
Valine (Val, V)
n = 12 (4.62%)
Leucine (Leu, L)
n = 31 (11.92%)
Isoleucine (Ile, I)
n = 17 (6.54%)
Methionine (Met, M)
n = 9 (3.46%)
Proline (Pro, P)
n = 12 (4.62%)
Phenylalanine (Phe, F)
n = 25 (9.62%)
Tyrosine (Tyr, Y)
n = 8 (3.08%)
Tryptophan (Trp, W)
n = 13 (5.0%)
Aspartic acid (Asp, D)
n = 5 (1.92%)
Glutamic acid (Glu, E)
n = 8 (3.08%)
Asparagine (Asn, N)
n = 2 (0.77%)
Glutamine (Gln, Q)
n = 9 (3.46%)
Histidine (His, H)
n = 16 (6.15%)
Lysine (Lys, K)
n = 8 (3.08%)
Arginine (Arg, R)
n = 5 (1.92%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 12 | 5 | 8 | 8 | 3 | 14 | 1 | 5 | 8 | 1 | 2 | 1 | 7 | 2 | 10 | 15 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 1 | 0 | 1 | 4 | 6 | 5 | 0 | 0 | 7 | 10 | 3 | 1 | 2 | 8 | 1 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 13 | 14 | 0 | 1 | 3 | 6 | 1 | 0 | 2 | 1 | 7 | 0 | 0 | 0 | 2 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 12 | 8 | 0 | 3 | 2 | 7 | 1 | 0 | 1 | 3 | 1 | 0 | 0 | 0 | 0 | 13 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 60 | 68 | 70 | 63 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 41 | 70 | 56 | 94 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 12 | 82 | 116 | 51 | ||||||||||||
| CYTB (size: 1131 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 24 (6.38%)
Alanine (Ala, A)
n = 27 (7.18%)
Serine (Ser, S)
n = 26 (6.91%)
Threonine (Thr, T)
n = 36 (9.57%)
Cysteine (Cys, C)
n = 2 (0.53%)
Valine (Val, V)
n = 18 (4.79%)
Leucine (Leu, L)
n = 54 (14.36%)
Isoleucine (Ile, I)
n = 35 (9.31%)
Methionine (Met, M)
n = 19 (5.05%)
Proline (Pro, P)
n = 23 (6.12%)
Phenylalanine (Phe, F)
n = 25 (6.65%)
Tyrosine (Tyr, Y)
n = 15 (3.99%)
Tryptophan (Trp, W)
n = 12 (3.19%)
Aspartic acid (Asp, D)
n = 8 (2.13%)
Glutamic acid (Glu, E)
n = 7 (1.86%)
Asparagine (Asn, N)
n = 13 (3.46%)
Glutamine (Gln, Q)
n = 7 (1.86%)
Histidine (His, H)
n = 9 (2.39%)
Lysine (Lys, K)
n = 9 (2.39%)
Arginine (Arg, R)
n = 7 (1.86%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 14 | 21 | 16 | 11 | 15 | 22 | 0 | 6 | 7 | 0 | 4 | 4 | 9 | 1 | 8 | 17 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 3 | 0 | 2 | 7 | 9 | 11 | 0 | 3 | 9 | 10 | 2 | 1 | 5 | 16 | 1 | 0 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 20 | 16 | 0 | 3 | 7 | 11 | 1 | 3 | 1 | 3 | 12 | 1 | 0 | 1 | 12 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 8 | 6 | 1 | 2 | 6 | 9 | 0 | 0 | 0 | 7 | 0 | 0 | 0 | 1 | 0 | 11 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 84 | 94 | 116 | 83 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 49 | 108 | 69 | 151 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 10 | 148 | 158 | 61 | ||||||||||||
| ND1 (size: 972 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 16 (4.95%)
Alanine (Ala, A)
n = 26 (8.05%)
Serine (Ser, S)
n = 25 (7.74%)
Threonine (Thr, T)
n = 33 (10.22%)
Cysteine (Cys, C)
n = 2 (0.62%)
Valine (Val, V)
n = 10 (3.1%)
Leucine (Leu, L)
n = 56 (17.34%)
Isoleucine (Ile, I)
n = 20 (6.19%)
Methionine (Met, M)
n = 19 (5.88%)
Proline (Pro, P)
n = 25 (7.74%)
Phenylalanine (Phe, F)
n = 17 (5.26%)
Tyrosine (Tyr, Y)
n = 9 (2.79%)
Tryptophan (Trp, W)
n = 9 (2.79%)
Aspartic acid (Asp, D)
n = 3 (0.93%)
Glutamic acid (Glu, E)
n = 11 (3.41%)
Asparagine (Asn, N)
n = 12 (3.72%)
Glutamine (Gln, Q)
n = 10 (3.1%)
Histidine (His, H)
n = 3 (0.93%)
Lysine (Lys, K)
n = 9 (2.79%)
Arginine (Arg, R)
n = 8 (2.48%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 9 | 11 | 15 | 3 | 12 | 26 | 5 | 10 | 9 | 1 | 4 | 1 | 5 | 0 | 6 | 11 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 4 | 0 | 2 | 5 | 9 | 10 | 2 | 0 | 6 | 6 | 4 | 1 | 5 | 18 | 1 | 2 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 12 | 19 | 0 | 2 | 6 | 11 | 0 | 1 | 5 | 3 | 6 | 1 | 0 | 2 | 10 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 2 | 11 | 0 | 1 | 2 | 8 | 1 | 1 | 0 | 7 | 0 | 0 | 0 | 0 | 1 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 66 | 92 | 99 | 67 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 41 | 103 | 58 | 122 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 20 | 100 | 163 | 41 | ||||||||||||
| ND2 (size: 1033 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.08%)
Alanine (Ala, A)
n = 27 (7.87%)
Serine (Ser, S)
n = 26 (7.58%)
Threonine (Thr, T)
n = 59 (17.2%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 12 (3.5%)
Leucine (Leu, L)
n = 64 (18.66%)
Isoleucine (Ile, I)
n = 29 (8.45%)
Methionine (Met, M)
n = 18 (5.25%)
Proline (Pro, P)
n = 18 (5.25%)
Phenylalanine (Phe, F)
n = 8 (2.33%)
Tyrosine (Tyr, Y)
n = 6 (1.75%)
Tryptophan (Trp, W)
n = 10 (2.92%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.17%)
Asparagine (Asn, N)
n = 12 (3.5%)
Glutamine (Gln, Q)
n = 11 (3.21%)
Histidine (His, H)
n = 8 (2.33%)
Lysine (Lys, K)
n = 11 (3.21%)
Arginine (Arg, R)
n = 5 (1.46%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 9 | 20 | 18 | 8 | 11 | 30 | 5 | 8 | 9 | 2 | 5 | 2 | 4 | 1 | 4 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 0 | 0 | 0 | 1 | 16 | 9 | 1 | 1 | 7 | 4 | 2 | 2 | 2 | 14 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 21 | 30 | 3 | 5 | 7 | 12 | 0 | 0 | 2 | 1 | 5 | 0 | 2 | 4 | 8 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 7 | 4 | 0 | 0 | 2 | 11 | 0 | 0 | 1 | 4 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 59 | 96 | 131 | 58 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 31 | 128 | 54 | 131 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 16 | 115 | 167 | 46 | ||||||||||||
| ND3 (size: 1033 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 14 (4.08%)
Alanine (Ala, A)
n = 27 (7.87%)
Serine (Ser, S)
n = 26 (7.58%)
Threonine (Thr, T)
n = 59 (17.2%)
Cysteine (Cys, C)
n = 0 (0%)
Valine (Val, V)
n = 12 (3.5%)
Leucine (Leu, L)
n = 64 (18.66%)
Isoleucine (Ile, I)
n = 29 (8.45%)
Methionine (Met, M)
n = 18 (5.25%)
Proline (Pro, P)
n = 18 (5.25%)
Phenylalanine (Phe, F)
n = 8 (2.33%)
Tyrosine (Tyr, Y)
n = 6 (1.75%)
Tryptophan (Trp, W)
n = 10 (2.92%)
Aspartic acid (Asp, D)
n = 2 (0.58%)
Glutamic acid (Glu, E)
n = 4 (1.17%)
Asparagine (Asn, N)
n = 12 (3.5%)
Glutamine (Gln, Q)
n = 11 (3.21%)
Histidine (His, H)
n = 8 (2.33%)
Lysine (Lys, K)
n = 11 (3.21%)
Arginine (Arg, R)
n = 5 (1.46%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 9 | 20 | 18 | 8 | 11 | 30 | 5 | 8 | 9 | 2 | 5 | 2 | 4 | 1 | 4 | 4 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 0 | 0 | 0 | 1 | 16 | 9 | 1 | 1 | 7 | 4 | 2 | 2 | 2 | 14 | 0 | 5 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 21 | 30 | 3 | 5 | 7 | 12 | 0 | 0 | 2 | 1 | 5 | 0 | 2 | 4 | 8 | 1 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 7 | 4 | 0 | 0 | 2 | 11 | 0 | 0 | 1 | 4 | 0 | 0 | 0 | 0 | 0 | 10 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 59 | 96 | 131 | 58 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 31 | 128 | 54 | 131 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 16 | 115 | 167 | 46 | ||||||||||||
| ND4 (size: 1369 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 18 (3.96%)
Alanine (Ala, A)
n = 36 (7.91%)
Serine (Ser, S)
n = 30 (6.59%)
Threonine (Thr, T)
n = 50 (10.99%)
Cysteine (Cys, C)
n = 5 (1.1%)
Valine (Val, V)
n = 10 (2.2%)
Leucine (Leu, L)
n = 89 (19.56%)
Isoleucine (Ile, I)
n = 35 (7.69%)
Methionine (Met, M)
n = 39 (8.57%)
Proline (Pro, P)
n = 24 (5.27%)
Phenylalanine (Phe, F)
n = 17 (3.74%)
Tyrosine (Tyr, Y)
n = 14 (3.08%)
Tryptophan (Trp, W)
n = 8 (1.76%)
Aspartic acid (Asp, D)
n = 3 (0.66%)
Glutamic acid (Glu, E)
n = 9 (1.98%)
Asparagine (Asn, N)
n = 17 (3.74%)
Glutamine (Gln, Q)
n = 14 (3.08%)
Histidine (His, H)
n = 12 (2.64%)
Lysine (Lys, K)
n = 15 (3.3%)
Arginine (Arg, R)
n = 11 (2.42%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 16 | 19 | 33 | 9 | 13 | 39 | 6 | 21 | 13 | 1 | 1 | 2 | 5 | 2 | 5 | 12 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 1 | 4 | 6 | 16 | 14 | 0 | 1 | 8 | 7 | 2 | 5 | 6 | 13 | 0 | 7 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 17 | 25 | 1 | 0 | 8 | 15 | 0 | 2 | 5 | 2 | 12 | 1 | 1 | 2 | 15 | 2 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 10 | 7 | 2 | 0 | 3 | 13 | 2 | 0 | 2 | 7 | 2 | 0 | 0 | 0 | 0 | 7 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 76 | 128 | 163 | 89 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 49 | 133 | 84 | 190 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 26 | 152 | 219 | 59 | ||||||||||||
| ND4L (size: 291 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 3 (3.13%)
Alanine (Ala, A)
n = 9 (9.38%)
Serine (Ser, S)
n = 8 (8.33%)
Threonine (Thr, T)
n = 14 (14.58%)
Cysteine (Cys, C)
n = 2 (2.08%)
Valine (Val, V)
n = 1 (1.04%)
Leucine (Leu, L)
n = 15 (15.63%)
Isoleucine (Ile, I)
n = 9 (9.38%)
Methionine (Met, M)
n = 12 (12.5%)
Proline (Pro, P)
n = 3 (3.13%)
Phenylalanine (Phe, F)
n = 2 (2.08%)
Tyrosine (Tyr, Y)
n = 2 (2.08%)
Tryptophan (Trp, W)
n = 0 (0%)
Aspartic acid (Asp, D)
n = 1 (1.04%)
Glutamic acid (Glu, E)
n = 2 (2.08%)
Asparagine (Asn, N)
n = 7 (7.29%)
Glutamine (Gln, Q)
n = 1 (1.04%)
Histidine (His, H)
n = 1 (1.04%)
Lysine (Lys, K)
n = 3 (3.13%)
Arginine (Arg, R)
n = 1 (1.04%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 7 | 2 | 10 | 1 | 4 | 6 | 0 | 4 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 2 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 2 | 2 | 0 | 0 | 6 | 3 | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 2 | 0 | 3 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 6 | 4 | 1 | 1 | 0 | 5 | 0 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 7 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 2 | 0 | 0 | 1 | 3 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 16 | 17 | 47 | 17 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 8 | 32 | 18 | 39 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 4 | 32 | 43 | 18 | ||||||||||||
| ND5 (size: 1794 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 26 (4.36%)
Alanine (Ala, A)
n = 49 (8.21%)
Serine (Ser, S)
n = 51 (8.54%)
Threonine (Thr, T)
n = 82 (13.74%)
Cysteine (Cys, C)
n = 6 (1.01%)
Valine (Val, V)
n = 15 (2.51%)
Leucine (Leu, L)
n = 91 (15.24%)
Isoleucine (Ile, I)
n = 58 (9.72%)
Methionine (Met, M)
n = 31 (5.19%)
Proline (Pro, P)
n = 30 (5.03%)
Phenylalanine (Phe, F)
n = 26 (4.36%)
Tyrosine (Tyr, Y)
n = 18 (3.02%)
Tryptophan (Trp, W)
n = 11 (1.84%)
Aspartic acid (Asp, D)
n = 9 (1.51%)
Glutamic acid (Glu, E)
n = 9 (1.51%)
Asparagine (Asn, N)
n = 16 (2.68%)
Glutamine (Gln, Q)
n = 21 (3.52%)
Histidine (His, H)
n = 16 (2.68%)
Lysine (Lys, K)
n = 24 (4.02%)
Arginine (Arg, R)
n = 8 (1.34%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 29 | 29 | 24 | 12 | 16 | 38 | 10 | 13 | 17 | 4 | 6 | 3 | 4 | 2 | 14 | 12 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 7 | 1 | 5 | 7 | 21 | 21 | 0 | 2 | 8 | 15 | 1 | 3 | 9 | 18 | 0 | 11 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 43 | 24 | 4 | 7 | 15 | 21 | 0 | 0 | 8 | 7 | 11 | 3 | 2 | 7 | 9 | 4 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 12 | 8 | 1 | 3 | 6 | 20 | 4 | 0 | 2 | 6 | 0 | 0 | 0 | 1 | 0 | 8 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 108 | 151 | 219 | 120 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 59 | 204 | 114 | 221 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 38 | 209 | 238 | 113 | ||||||||||||
| ND6 (size: 504 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 29 (17.37%)
Alanine (Ala, A)
n = 14 (8.38%)
Serine (Ser, S)
n = 12 (7.19%)
Threonine (Thr, T)
n = 1 (0.6%)
Cysteine (Cys, C)
n = 3 (1.8%)
Valine (Val, V)
n = 22 (13.17%)
Leucine (Leu, L)
n = 25 (14.97%)
Isoleucine (Ile, I)
n = 9 (5.39%)
Methionine (Met, M)
n = 8 (4.79%)
Proline (Pro, P)
n = 3 (1.8%)
Phenylalanine (Phe, F)
n = 16 (9.58%)
Tyrosine (Tyr, Y)
n = 10 (5.99%)
Tryptophan (Trp, W)
n = 2 (1.2%)
Aspartic acid (Asp, D)
n = 3 (1.8%)
Glutamic acid (Glu, E)
n = 3 (1.8%)
Asparagine (Asn, N)
n = 2 (1.2%)
Glutamine (Gln, Q)
n = 1 (0.6%)
Histidine (His, H)
n = 1 (0.6%)
Lysine (Lys, K)
n = 1 (0.6%)
Arginine (Arg, R)
n = 2 (1.2%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 9 | 0 | 2 | 3 | 0 | 0 | 0 | 5 | 0 | 1 | 13 | 0 | 4 | 5 | 15 | 1 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 6 | 2 | 1 | 8 | 1 | 3 | 2 | 10 | 1 | 2 | 16 | 2 | 1 | 0 | 0 | 0 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 0 | 1 | 0 | 8 | 0 | 1 | 2 | 1 | 0 | 8 | 2 | 1 | 17 | 1 | 1 | 0 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 1 | 1 | 2 | 3 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 71 | 10 | 23 | 64 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 38 | 29 | 21 | 80 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 54 | 9 | 21 | 84 | ||||||||||||
| Total protein-coding genes (size: 11296 bases) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid sequence: | |||||||||||||||
| Amino acid frequencies:
Glycine (Gly, G)
n = 211 (5.61%)
Alanine (Ala, A)
n = 286 (7.6%)
Serine (Ser, S)
n = 269 (7.15%)
Threonine (Thr, T)
n = 436 (11.59%)
Cysteine (Cys, C)
n = 25 (0.66%)
Valine (Val, V)
n = 145 (3.85%)
Leucine (Leu, L)
n = 592 (15.74%)
Isoleucine (Ile, I)
n = 295 (7.84%)
Methionine (Met, M)
n = 228 (6.06%)
Proline (Pro, P)
n = 220 (5.85%)
Phenylalanine (Phe, F)
n = 206 (5.48%)
Tyrosine (Tyr, Y)
n = 113 (3.0%)
Tryptophan (Trp, W)
n = 98 (2.6%)
Aspartic acid (Asp, D)
n = 60 (1.59%)
Glutamic acid (Glu, E)
n = 80 (2.13%)
Asparagine (Asn, N)
n = 120 (3.19%)
Glutamine (Gln, Q)
n = 100 (2.66%)
Histidine (His, H)
n = 99 (2.63%)
Lysine (Lys, K)
n = 106 (2.82%)
Arginine (Arg, R)
n = 67 (1.78%) |
|||||||||||||||
| Codon statistics: | |||||||||||||||
| AUU | AUC | AUA | CUU | CUC | CUA | CUG | UUA | CAA | CAG | GUU | GUC | GUA | GUG | UUU | UUC |
| 138 | 157 | 192 | 71 | 108 | 262 | 36 | 91 | 87 | 13 | 48 | 25 | 57 | 15 | 81 | 125 |
| AUG | UGU | UGC | GCU | GCC | GCA | GCG | GGU | GGC | GGA | GGG | CCU | CCC | CCA | CCG | ACU |
| 36 | 7 | 18 | 46 | 129 | 105 | 6 | 19 | 61 | 95 | 36 | 23 | 47 | 144 | 6 | 43 |
| ACC | ACA | ACG | UCU | UCC | UCA | UCG | AGU | AGC | UAU | UAC | UGG | UUG | AAU | AAC | CAU |
| 195 | 189 | 9 | 32 | 73 | 116 | 6 | 8 | 34 | 35 | 78 | 9 | 24 | 25 | 95 | 21 |
| CAC | GAA | GAG | GAU | GAC | AAA | AAG | CGU | CGC | CGA | CGG | AGA | AGG | UAA | UAG | UGA |
| 78 | 72 | 8 | 14 | 46 | 96 | 10 | 5 | 11 | 47 | 4 | 1 | 1 | 4 | 1 | 89 |
| Codons with 1st base G | Codons with 1st base C | Codons with 1st base A | Codons with 1st base U | ||||||||||||
| 782 | 963 | 1229 | 789 | ||||||||||||
| Codons with 2nd base G | Codons with 2nd base C | Codons with 2nd base A | Codons with 2nd base U | ||||||||||||
| 445 | 1169 | 683 | 1466 | ||||||||||||
| Codons with 3rd base G | Codons with 3rd base C | Codons with 3rd base A | Codons with 3rd base U | ||||||||||||
| 220 | 1280 | 1647 | 616 | ||||||||||||
Error: F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ ?​t​e​r​m​=​(​"​P​o​g​o​n​a​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ v​i​t​t​i​c​e​p​s​"​[​O​r​g​a​n​i​s​m​]​)​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ (​r​e​f​s​e​q​[​f​i​l​t​e​r​]​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ A​N​D​ F​a​i​l​e​d​ t​o​ u​n​d​e​r​s​t​a​n​d​ i​d​:​ m​i​t​o​c​h​o​n​d​r​i​o​n​[​f​i​l​t​e​r​]​)​
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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